氨基酸卟啉锌配合物对氨基酸酯的分子识别研究(英文)

用紫外可见吸收光谱滴定方法研究了一种新型的苏氨酸卟啉锌配合物(主体)对氨基酸酯(客体)的分子识别.这种锌卟啉可以与氨基酸酯形成 1:1和 1:2的两种加合物.氨基酸酯的氨基首先与氨基酸残基的羧基作用形成 1:1的加合物,然后与锌卟啉的中央锌原子配位形成 1:2的加合物,客体分子与主体分子上的氨基酸残基之间的排斥作用以及主客体之间的色散力作用是主体分子能识别客体分子的另外两种作用。     

甲磺酸达比加群酯杂质的合成

根据甲磺酸达比加群酯工艺,合成了甲磺酸达比加群酯的7个杂质：3-【【【2-｛［(4-氰基苯基)氨基］甲基｝-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸（A）, 3-【【【2-【｛［4-(乙氧基)叔胺基］苯基｝氨基】甲基】-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸乙酯盐酸盐(B), 3-【【【2-【｛［(4-甲脒基)苯基］氨基｝甲基】-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸乙酯盐酸盐(C), 3-【【【2-【【【4-｛［(己氧基)羰基］氨基亚甲胺基｝苯基】氨基】甲基】-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸甲酯盐酸盐(D), 3-【【【2-【【【4-【｛［(己氧基)羰基］氨基｝羰基】苯基】氨基】甲基】-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸乙酯(E), 3-【【【2-【【【4-【｛［(己氧基)羰基］氨基｝亚氨甲基】苯基】氨基】甲基】-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸(F), (Z)-3-【【【2-【【【4-【｛［(N,N′-二己氧基)羰基］脒基｝亚氨甲基】苯基】氨基】甲基】-1-甲基-1H-苯并咪唑-5-基】羰基】(吡啶-2-基)氨基】丙酸乙酯(G),其结构经¹H NMR和ESI-MS确证。     

R(-)四氢噻唑-2-硫酮-4-羧酸对D,L-氨基酸酯拆分的研究

以新手性拆分试剂R(-)四氢噻唑-2-硫酮-4-羧酸[简称R(-)TTCA]对D,L-氨基酸酯进行手性拆分,分别得到(R)TTCA氨基酸酯盐1a_1f([α]_D²⁰＝-30.40°～-42.70°)及光学活性氨基酸酯2a-2f,其光学纯度为35.4%～75.8%.由1a_1f在碱存在下分解出2a-2f的对映体3a-3f,光学纯度为39.50%～69.10%.用半经验的量子化学PM3方法研究了氨基的碱性、中间产物铵盐生成热和稳定性.     

Synthesis,characterization, and structural investigations of 1‐amino‐3‐substituted‐1,2,3‐triazolium salts,and a new route to 1‐substituted‐1,2,3‐triazoles

Quarternary salts based upon 3‐alkyl substituted 1‐amino‐1,2,3‐triazolium cations (alkyl = methyl, ethyl, nypropyl, 2‐propenyl, and n‐butyl) have been synthesized and characterized by vibrational spectra, multinuclear NMR, elemental analysis, and DSC studies. Subsequent diazotization of these salts results in the exclusive formation of 1‐alkyl‐1,2,3‐triazoles. Single crystal X‐ray studies were carried out for 1‐amino‐3‐methyl‐1,2,3‐triazolium iodide, 1‐amino‐3‐ethyl‐1,2,3‐triazolium bromide, 1‐amino‐3‐n‐propyl‐1,2,3‐triazolium bromide, and 1‐amino‐3‐n‐butyl‐1,2,3‐triazolium bromide as well as the starting heterocycle, 1‐amino‐1,2,3‐triazole, and all of the structures are discussed.     

抗菌肽SAMP1及其类似肽的构效关系

以人工合成抗菌肽1(Synthetic antimicrobial peptide 1, SAMP1)为研究模板, 采用氨基酸序列重排、 不同的带正电荷氨基酸残基和疏水性氨基酸残基取代等方法, 设计合成了8条SAMP1类似肽. 利用生物信息学软件预测了SAMP1及其类似肽的理化性质; 采用圆二色光谱(CD)技术测定其在不同环境下二级结构的变化; 采用噻唑蓝(MTT)法测定其抗菌活性; 通过红细胞溶血实验评估了这些多肽的溶血性. 结果表明, 大部分类似肽具有较低的溶血毒性和较高的广谱抗菌活性. CD光谱分析结果显示, 大部分类似肽二级结构以α螺旋和无规则卷曲为主, 在体积分数为50%的2,2,2-三氟乙醇(TFE)溶液中, α螺旋结构比例增加. 与母肽SAMP1相比, 经序列重排后得到的SAMP1-A1, SAMP1-A2和SAMP1-A3的抗菌活性变化不大, 但序列中正电荷氨基酸残基均匀分布的类似肽SAMP1-A2的溶血毒性增加. 用精氨酸(Arg)取代SAMP1序列中的赖氨酸(Lys)得到的类似肽SAMP1-A4的抗菌活性增强, 同时溶血毒性降低. 用疏水性较强的异亮氨酸(Ile)和缬氨酸(Val)取代SAMP1中的疏水性氨基酸残基, 得到的类似肽SAMP1-A5和SAMP1-A7的抗菌活性急剧降低; 用疏水性较弱的色氨酸(Trp)取代SAMP1中的疏水性氨基酸残基, 得到的类似肽SAMP1-A8的抗菌活性增强, 同时溶血毒性提高.     

Synthesis of libraries of thiazole, oxazole and imidazole-based cyclic peptides from azole-based amino acids. A new synthetic approach to bistratamides and didmolamides

Treatment of a 1 : 1 mixture of the thiazole-based amino acids 8a and 8b with FDPP-i-Pr(2)NEt in CH(3)CN gave a mixture of the cyclic trimers 14, 15, 16 and 17 and the cyclic tetramers 19 and 23 in the ratio 2 : 7 : 5 : 8 : 1 : 1 and in a combined yield of 70%. Separate coupling reactions between the bisimidazole amino acid 45 and the thiazole/oxazole amino acids 43a and 42a in the presence of FDPP-i-Pr(2)NEt led to the bisimidazole based cyclic trimers 55 and 57 respectively (54-57%) and to the cyclic tetramer 56 (8-11%). Similar coupling reactions involving the bisthiazole and bisoxazole amino acids 49 and 47 with the imidazole/oxazole/thiazole amino acids 41a, 42a and 43a gave rise to the library of oxazole, thiazole and imidazole-based cyclic peptides 58, 59, 60, 61, 62, 63, 64 and 65. A coupling reaction between the bisthiazole amino acid 49 and the oxazole amino acid 73 led to an efficient (36% overall) synthesis of bistratamide H (67) found in the ascidian Lissoclinum bistratum. Coupling reactions involving oxazolines with thiazole amino acids were less successful. Thus, a coupling reaction between the phenylalanine-based oxazoline amino acid 71a and either the thiazole amino acid 8a or the bisthiazole amino acid 74 gave only a 2% yield of the cyclic hexapeptide didmolamide A (4) found in the ascidian Didemnum molle. Didmolamide B (68) was obtained in 9% yield from a coupling reaction between 74 and the phenylalanine threonine amino acid 72, using either FDPP or DPPA.     

Quantification of glycated N‐terminal peptide of hemoglobin using derivatization for multiple functional groups of amino acids followed by liquid chromatography/tandem mass spectrometry

A novel method of amino acid analysis using derivatization of multiple functional groups (amino, carboxyl, and phenolic hydroxyl groups) was applied to measure glycated amino acids in order to quantify glycated peptides and evaluate the degree of glycation of peptide. Amino and carboxyl groups of amino acids were derivatized with 1‐bromobutane so that the hydrophobicities and basicities of the amino acids, including glycated amino acids, were improved. These derivatized amino acids could be detected with high sensitivity using LC‐MS/MS. In this study, 1‐deoxyfructosyl‐VHLTPE and VHLTPE, which are N‐terminal peptides of the β‐chains of hemoglobin, were selected as target compounds. After reducing the peptide sample solution with sodium borohydride, the obtained peptides were hydrolyzed with hydrochloric acid. The released amino acids were then derivatized with 1‐bromobutane and analyzed with LC‐MS/MS. The derivatized amino acids, including glycated amino acids, could be separated using an octadecyl silylated silica column and good sharp peaks were detected. We show a confirmatory experiment that the proposed method can be applied to evaluate the degree of glycation of peptides, using mixtures of glycated and non‐glycated peptide. Copyright © 2015 John Wiley & Sons, Ltd.     

Enantioselective decarboxylation of beta-keto esters with Pd/amino alcohol systems: successive metal catalysis and organocatalysis

The kinetics and mechanisms of one-pot cascade reactions of racemic beta-keto esters to give chiral ketones in the presence of Pd/C-chiral amino alcohol catalyst systems were studied. Transformation of 2-methyl-1-tetralone-2-carboxylic acid benzyl ester (1) into 2-methyl-1-tetralone (4) in the presence of Pd/C and cinchona alkaloids or ephedrine was chosen as a model reaction. After the first reaction step, the Pd-catalysed debenzylation of 1 to afford the corresponding beta-keto acid (2), there are two possible reaction routes that may be catalysed by the chiral amino alcohol in solution or by Pd(0) sites on the metal surface in cooperation with the adsorbed amino alcohol. The reaction intermediate 2 was synthesized, and the kinetics of decarboxylation were followed by NMR, UV and IR spectroscopy. The studies revealed that the role of Pd is to trigger the reaction series by deprotection of 1. The subsequent dominant reaction route from the racemic beta-keto acid 2 to the chiral ketone 4 is catalysed by the chiral amino alcohol in the liquid phase. It is shown that kinetic resolution of the diastereomeric salt of rac-2 and the chiral amino alcohol plays a key role in the enantioselection. High enantioselectivity necessitates an amino alcohol/rac-2 ratio of at least 2. A high ratio favours the formation of 1:1 amino alcohol/acid diastereomeric complexes, and the second amino alcohol molecule may be responsible for the enantioselective protonation of 2 in the diastereomeric complex.     

Dual substrate recognition of aminotransferases

Pyridoxal 5'-phosphate-dependent aminotransferases reversibly catalyzes the transamination reaction in which the alpha-amino group of amino acid 1 is transferred to the 2-oxo acid of amino acid 2 (usually 2-oxoglutarate) to produce the 2-oxo acid of amino acid 1 and amino acid 2 (glutamate). An aminotransferase must thus be able to recognize and bind two kinds of amino acids (amino acids 1 and 2), the side chains of which are different in shape and properties, from among many other small molecules. The dual substrate recognition mechanism has been discovered based on three-dimensional structures of aromatic amino acids, histidinol phosphate, glutamine:phenylpyruvate, acetylornithine, and branched-chain amino acid aminotransferases. There are two representative strategies for dual substrate recognition. An aromatic amino acid aminotransferase prepares charged and neutral pockets for acidic and aromatic side chains, respectively, at the same place by a large-scale rearrangement of the hydrogen-bond network caused by the induced fit. In a branched-chain aminotransferase, the same hydrophobic cavity implanted with hydrophilic sites accommodates both hydrophobic and acidic side chains without side-chain rearrangements of the active-site residues, which is reminiscent of the lock and key mechanism. Dual substrate recognition in other aminotransferases is attained by combining the two representative methods.     

不对称卟啉化合物的合成及其与氨基酸甲酯的作用

本文合成了含有单取代酰胺基的不对称卟啉及其锌(Ⅱ)络合物Zn(m,2-CNTPP)及Zn(m,3-CNTPP).对三氯甲烷溶液中它们与谷氨酸二甲酯、亮氨酸甲酯以及苯丙氨酸甲酯的作用进行了系统的研究,讨论了卟啉化合物对氨基酸甲酯分子的结合能力、结合方式,以及二者之间的多种存在形式。结果表明,锌卟啉与氨基酸甲酯以1:1的化学计量结合,中心金属锌(Ⅱ)离子和氨基酸甲酯中的氨基配位,卟啉环上的取代基与氨基酸甲酯中的残基可形成氢键、范德华力等弱相互作用。在卟啉和氨基酸甲酯的作用中,氨基与金属离子直接配位,α-碳上的质子靠近卟啉环平面,而酯基中的甲氧基处于远离卟啉环平面的位置。     

Koshikamide B, a cytotoxic peptide lactone from a marine sponge Theonella sp

Koshikamide B (1) has been isolated from two separate collections of the marine sponge Theonella sp. as the major cytotoxic constituent. Koshikamide B is a 17-residue peptide lactone composed of six proteinogenic amino acids, two D-isomers of proteinogenic amino acids, seven N-methylated amino acids, and two unusual amino acid residues. The unusual amino acids are N(delta)-carbamoylasparagine and 2-(3-amino-2-hydroxy-5-oxopyrrolidin-2-yl)propionic acid (AHPP); the former is first found as the constituent of peptides, whereas the latter is a new amino acid residue. The N-terminus of koshikamide B is blocked by a methoxyacetyl group. The structure of koshikamide B (1) has been determined by interpretation of spectral data and analysis of chemical degradation products. Koshikamide B (1) exhibits cytotoxicity against P388 murine leukemia cells and the human colon tumor (HCT-116) cell line with an IC50 value of 0.45 and 7.5 microg/mL, respectively.     

DFT calculations of amine‐imine tautomerism in some pyrimidine derivatives and their 1:1 and 1:2 complexes with water

Amine‐Imine tautomerization in 2‐amino‐pyrimidine (I), 2‐amino‐4,6‐dichloropyrimidine (II), 2‐amino‐4,6‐dimethylpyrimidine (III), and 2‐amino‐4,6‐dimethoxypyrimidine (IV) and their 1:1 and 1:2 H‐bonded complexes with water have been studied using the B3LYP/6‐31++G** method. Optimum molecular geometries, electronic properties, and energetics of these systems have been discussed. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Chiral recognition of amines and amino acid derivatives by optically active ruthenium Halterman porphyrins in organic solvents and water

The complexation of optically active or racemic amines, amino esters and amino acids with chiral ruthenium Halterman porphyrins is described. For various amino esters, chiral recognition was observed for the complexation of the ligand with up to 60% enantiomeric excess for 1-(1-naphthyl) ethylamine. A water-soluble ruthenium Halterman porphyrin, due to the presence of four sulfonate groups at the para-positions, was also prepared and used for the chiral recognition of amino acids in water.     

Engineering cytochrome P-450s

Cytochrome P-450 isozymes represent a critical component of nature’s spectrum of detoxification catalysts that could be exploited for bioremediation. The ethanol-inducible human cytochrome P-450 2E1 serves as a model eukaryotic P-450 that complements the bacterial P-450 cam in dehalogenation and detoxification of environmental pollutants. We explored the construction of novel chimeric P-450s using cytochrome P-450 camC and 2E1 genes. For construction of chimera 1 (478 amino acids, 55.14 kDa), 145 amino acids from the N-terminus of P-450 2E1 protein (493 amino acids, 56.84 kDa) were replaced with 130 amino acids from the N-terminus of P-450 camC protein (415 amino acids, 46.66 kDa). In chimera 2 (525 amino acids, 60.24 kDa) the strategy involves replacement of 28 amino acids in the C-terminus of chimera 1 with 75 amino acids from the C-terminus of P-450 camC gene. Homology models of both the chimeric proteins were developed using SWISS-MODEL based on the known crystal structure of cytochrome P-450 camC, BM-3, 1DT6A, and 2C17A. The models indicated that the proposed heme-binding site was intact, which is inevitable for catalytic activity of cytochrome P-450s. The expression of chimera 1 and 2 genes in Escherichia coli DH5α was evident from light-pink cell pellets, protein band in sodium dodecyl sulfate polyacrylamide gel electrophoresis, and diagnostic carbon monoxide-difference spectra. Our studies show that strategies can be developed to exploit the natural diversity of the P-450 superfamily to generate chimeric biocatalysts that would provide new templates amenable to directed evolution.     

(1-PYRENYL)METHYL CARBAMATES FOR FLUORESCENT "CAGED" AMINO ACIDS AND PEPTIDES

A highly fluorescent 1-pyrenylmethyloxycarbonyl amino acid (Pmoc-amino acid) is obtained in moderate yield by the reaction of (1-pyrenylmethyl)-4-nitrophenylcarbonate with an amino acid in the presence of sodium carbonate. The condensation of Pmoc-amino acid with an amino acid gives Pmoc-peptide in the presence of 1-ethyl-3-(3-dimethylaminepropyl)carbodiimide and 1-hydroxyben-zotriazole. The amino acid is recovered from an H₂O-dioxane (2:3) solution of Pmoc-amino acid by irradiation through a Pyrex filter with a medium pressure Hg lamp or at 340 nm. Although the quantum yield of the photolysis is rather low (ca 0.01), the photolysis proceeds fast and efficiently due to the large absorption coefficient of Pmoc-amino acid at around 340 nm. Thus, the use of Pmoc-amino acid as a “caged” amino acid is promising.     

Synthesis and functional studies of THF-gramicidin hybrid ion channels

THF-gramicidin hybrids 2-4 with the L-THF amino acid 1 in positions 11 and 12 and compounds 5-8 with the D-THF amino acid ent-1 in positions 10 and 11 were synthesized and their ion channel properties were studied by single-channel-current analysis. The replacement of positions 11 and 12 by the L-THF amino acid 1 gave a strongly reduced channel performance. In contrast, replacement of positions 10 and 11 by the D-THF amino acid ent-1 gave rise to new and interesting channel properties. For the permeability ratios, the ion selectivity shifts from Eisenman I towards Eisenman III selectivity and the channels display ms-dynamics. Most remarkable is the asymmetric compound 8, which inserts selectively into a DPhPC membrane and displays voltage-directed gating dynamics.     

Theoretical studies of force fields and IR spectra of isocytosine

The optimized geometries, complete harmonic force fields, and infrared intensities of isocytosine tautomers, amino‐hydroxy and amino‐oxoN(1)H, were calculated at the ab initio Hartree–Fock level using the 6‐31G* basis set. The theoretical force fields were scaled by empirical scale factors, which were determined by fitting to the IR spectrum of the amino‐oxo form and were then transferred to the amino‐hydroxy form. The average deviations between experimental and computed frequencies are 7.6 cm⁻¹ for amino‐oxo and 9.5 cm⁻¹ for amino‐hydroxy, respectively. The assignments of the fundamental frequencies and the transferability of the force constant scale factors are also presented. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 72: 53–60, 1999     

Chiral lithium amido sulfide ligands for asymmetric addition reactions of alkyllithium reagents to aldehydes

Six chiral amino sulfides have been synthesised from the amino acids phenylalanine, phenylglycine and valine. These amino sulfides were used as chiral ligands in the asymmetric addition of n-butyllithium and metyllithium to various aldehydes at low temperatures. The highest stereoselectivities were obtained with benzaldehyde, resulting in 1-phenyl-1-pentanol and 1-phenyl-1-ethanol in enantiomeric excesses of >98.5 and 95%, respectively. These stereoselectivities were significantly higher than those induced by the ether analogues.     

Synthesis of ethyl ({[adamantan-1(2)-ylalkyl]-carbamothioyl}amino)acetates

Reactions of adamantan-1(2)-amines and adamantan-1(2)-ylalkanamines with ethyl isothiocyanatoacetate afforded ethyl ({[adamantan-1(2)-ylalkyl]carbamothioyl}amino)acetates in 85–95% yields. The hydrolysis of ethyl {[(adamantan-2-yl)carbamothioyl]amino}acetate in alkaline medium resulted in the formation of {[(adamantan-2-yl)carbamothioyl]amino}acetic acid in a virtually quantitative yield.     

Acceleration of carbon-13 spin-lattice relaxation times in amino acids by electrolytes

A series of amino acids and carboxylic acids were determined by 13C NMR spectroscopy.The results showed that addition of 3M MgCl2 led to the 13C NMR integral area of samples being well proportional to number of carbon atoms that produce the particular signal with reliability over 95%. Measurements of 13C spin-lattice relaxation times (T1's) are reported for a number of amino acids. T1's of all the carbons in amino acids generally tend to decrease with the increase of the concentration of electrolytes, and the presence of magnesium slats is of significant. Carboxylic carbons in amino acids are the most sensitive "acceptor" of the 13C spin-lattice relaxation accelerating effects in electrolytes, and the 13C spin-lattice relaxation accelerating ability of electrolytes is Mg(ClO4)2 ＞MgCl2 ＞CaCl2 ＞NaCl ＞KCl ＞LiClO4 ＞NaOH. In general, T1's of C1 carbons in nonpolar a-amino acids are higher than those in polar and basic a-amino acids both in aqueous and 3M MgCl2 medium. In aliphatic straight-chain amino acids, a-, a-, a-, ai- and a- amino acids, T1's of C1 carbons tend to reduce with the increase of inserted carbon numbers between amino and carboxylic groups compared with Gly. T1's can be decreased even more when amino acids are mixed in 3M MgCl2, but T1's of carbons in amino acids decrease slightly with increase of the concentration of amino acids in 3M MgCl2. The mechanisms of the observed phenomena are discussed in terms of intermolecular interaction and paramagnetic impurity in electrolytes, large contributions of intermolecular interaction which is enhanced in electrolytes concentrate on the incoming "unsaturation" of the primary solvation shell of cations with the increase of electrolytes concentration and complexes formation of amino acids with metal ions. In electrolytes, amino acids are "anchored" to cations and molecule tumbling is slowed down, molecular rigidity is increased and molecular size is "enlarged", all of these are helpful to accelerate the 13C spin-lattice relaxation. Atlast, MgCl2 is proposed as an efficient relaxation agent for analysis of amino acids and some carboxylic acids.Samples were dissolved with the aid of supersonic which has the effect of degassing, and they were degassed again with supersonic for 30 seconds right before determination. All of the 13C NMR was obtained with a Bruker DPX-300 NMR instrument, using NOE-suppressed inverse gated decoupling with a recycle delay 8.00s and a sweep width 30120.48Hz, experiment temperature is integral of the carbon with the smallest chemical shift is calibrated as 10.00. Spin-lattice relaxation times (T1's) were determined by using inversion recovery according to Bruker avance user's guide.The pulse sequence is (T-90.°-T-180°-o-90t°) n.