Solid-state NMR studies and DFT calculations of flavonoids: baicalein, baicalin and wogonoside

Three flavonoids of pharmaceutical importance-baicalein, baicalin, and wogonoside-were isolated from a Chinese medicinal plant Scutellaria baicalensis Georgi and studied by 13C NMR in solution and solid state. Two-dimensional (2D) NMR spectroscopy in the liquid phase and dipolar dephasing (DD) experiments in magic-angle spinning (MAS) spectra enabled the assignment of 13C resonances. The cross-polarization (CP) time constants T(CH) and relaxation times T(H) (1rho) were obtained from the variable-contact time experiments. The principal elements of the 13C chemical shift tensor were determined in the spectra recorded under slow sample spinning (2 kHz) using phase-adjusted spinning sideband (PASS)-2D NMR technique, and were verified by density functional theory gauge-independent atomic orbital (DFT GIAO) calculations of shielding constants. Analysis of the 13C delta(ii) and comparison with shielding parameters calculated for different conformers of compounds 1-3 enabled the selection of the most reliable geometry in the solid phase. In all three compounds, an intramolecular hydrogen bond C5--OH...=C4 is formed; the existence of baicalein and baicalin with 'anticlockwise' orientation of OH groups is more probable.     

Search of structure and ligands exchange for palladium(II) complexes with N-allylimidazole; X-ray and solid-state/solution NMR studies

Two coordination compounds of palladium(II) with N-allylimidazole (l) of the general formula [PdL₄]Cl₂ · 3H₂O (1) and trans-[PdL₂Cl₂] (2) have been synthesized. The crystal and molecular structure of complexes 1 and 2 was established by single-crystal X-ray diffraction analysis. The X-ray structural data were supplemented by solid-state ¹³C NMR measurements (CP MAS and PASS 2D). The 1D and 2D NMR studies in solution reveal that complex 1 is unstable at room temperature and undergoes reversible decomposition to 2. The method for how to preserve a complex with four allyl-imidazole ligands in solution is shown.     

A C and N experimental NMR and theoretical study of the structure of linear primary aliphatic amines and ammonium salts: from C1 to C18

Eighteen aliphatic linear amines, from methylamine to stearylamine, have been experimentally studied by NMR and theoretically calculated at the GIAO/B3LYP/6-311++G(d,p) level. A partial exploration of their conformation has been carried out, mainly to determine the effect on the chemical shifts. In solution and for neutral amines, ¹⁵N chemical shifts indicate a mixture of two conformations. In the solid state (CPMAS NMR) only the subset of solid amines has been studied (from C14 to C18). The ¹⁵N signals of the corresponding ammonium salts in the solid state depend on the counteranions, Cl⁻ and CF₃CO₂⁻, a result that is theoretically proven.     

Adducts of nitrogenous ligands with rhodium(II) tetracarboxylates and tetraformamidinate: NMR spectroscopy and density functional theory calculations

Complexation of tetrakis(μ₂‐N,N'‐diphenylformamidinato‐N,N')‐di‐rhodium(II) with ligands containing nitrile, isonitrile, amine, hydroxyl, sulfhydryl, isocyanate, and isothiocyanate functional groups has been studied in liquid and solid phases using ¹H, ¹³C and ¹⁵N NMR, ¹³C and ¹⁵N cross polarisation–magic angle spinning NMR, and absorption spectroscopy in the visible range. The complexation was monitored using various NMR physicochemical parameters, such as chemical shifts, longitudinal relaxation times T₁, and NOE enhancements. Rhodium(II) tetraformamidinate selectively bonded only unbranched amine (propan‐1‐amine), pentanenitrile, and (1‐isocyanoethyl)benzene. No complexation occurred in the case of ligands having hydroxyl, sulfhydryl, isocyanate, and isothiocyanate functional groups, and more expanded amine molecules such as butan‐2‐amine and 1‐azabicyclo[2.2.2]octane. Such features were opposite to those observed in rhodium(II) tetracarboxylates, forming adducts with all kind of ligands. Special attention was focused on the analysis of Δδ parameters, defined as a chemical shift difference between signal in adduct and corresponding signal in free ligand. In the case of ¹H NMR, Δδ values were either negative in adducts of rhodium(II) tetraformamidinate or positive in adducts of rhodium(II) tetracarboxylates. Experimental findings were supported by density functional theory molecular modelling and gauge independent atomic orbitals chemical shift calculations. The calculation of chemical shifts combined with scaling procedure allowed to reproduce qualitatively Δδ parameters. Copyright © 2013 John Wiley & Sons, Ltd.     

Configurational analysis of the natural product passifloricin A by quantum mechanical C NMR GIAO chemical shift calculations

Quantum chemical calculations at mPW1PW91 level, with full geometry optimization, using the 6-31g(d) basis set, and GIAO (gauge including atomic orbitals) ¹³C NMR chemical shifts using the 6-31g(d,p) basis set, are here utilized as a support to define the configurational features of the natural product passifloricin A, whose previously proposed relative configuration has been recently shown, by synthetic studies, to be incorrect. This study suggests that the relative stereostructure for passifloricin A corresponds to the δ-lactone of the (5R,7R,9S,11R)-tetrahydroxyhexacos-2-enoic acid.     

Oligomeric complexes of some heteroaromatic ligands and aromatic diamines with rhodium and molybdenum tetracarboxylates: 13C and 15N CPMAS NMR and density functional theory studies

Seven new oligomeric complexes of 4,4′‐bipyridine; 3,3′‐bipyridine; benzene‐1,4‐diamine; benzene‐1,3‐diamine; benzene‐1,2‐diamine; and benzidine with rhodium tetraacetate, as well as 4,4′‐bipyridine with molybdenum tetraacetate, have been obtained and investigated by elemental analysis and solid‐state nuclear magnetic resonance spectroscopy, ¹³C and ¹⁵N CPMAS NMR. The known complexes of pyrazine with rhodium tetrabenzoate, benzoquinone with rhodium tetrapivalate, 4,4′‐bipyridine with molybdenum tetrakistrifluoroacetate and the 1 : 1 complex of 2,2′‐bipyridine with rhodium tetraacetate exhibiting axial–equatorial ligation mode have been obtained as well for comparison purposes. Elemental analysis revealed 1 : 1 complex stoichiometry of all complexes. The ¹⁵N CPMAS NMR spectra of all new complexes consist of one narrow signal, indicating regular uniform structures. Benzidine forms a heterogeneous material, probably containing linear oligomers and products of further reactions. The complexes were characterized by the parameter complexation shift Δδ (Δδ = δ_complex ? δ_ligand). This parameter ranged from around ?40 to ?90 ppm in the case of heteroaromatic ligands, from around ?12 to ?22 ppm for diamines and from ?16 to ?31 ppm for the complexes of molybdenum tetracarboxylates with 4,4′‐bipyridine. The experimental results have been supported by a density functional theory computation of ¹⁵N NMR chemical shifts and complexation shifts at the non‐relativistic Becke, three‐parameter, Perdew‐Wang 91/[6‐311++G(2d,p), Stuttgart] and GGA–PBE/QZ4P levels of theory and at the relativistic scalar and spin‐orbit zeroth order regular approximation/GGA–PBE/QZ4P level of theory. Nucleus‐independent chemical shifts have been calculated for the selected compounds. Copyright © 2015 John Wiley & Sons, Ltd.     

Solid-state C NMR and molecular modeling studies of acetyl aleuritolic acid obtained from Croton cajucara Benth

Solid-state ¹³C nuclear magnetic resonance (¹³C NMR) with magic-angle spinning (MAS) and with cross-polarization and magic-angle spinning (CP/MAS) spectra, and differential scanning calorimetry (DSC) techniques were used to obtain structural data from a sample of acetyl aleuritolic acid (AAA) extracted from the stem bark of Croton cajucara Benth. (Euphorbiaceae) and recrystallized from acetone. Since solid-state ¹³C NMR results suggested the presence of more than one molecule in the unitary cell for the AAA, DSC analysis and molecular modeling calculations were used to access this possibility. The absence of phase transition peaks in the DSC spectra and the dimeric models of AAA simulated using the semi-empirical PM3 method are in agreement with that proposal.     

13C and 15N NMR spectra of aminobenzimidazoles in solution and in the solid state

The ¹³C [hexadeutero‐dimethylsulfoxide (DMSO‐d₆), hexamethyl‐phosphoramide (HMPA)‐d₁₈and solid‐state] and ¹⁵N (solid‐state) NMR spectra of six C‐aminobenzimidazoles have been recorded. The tautomerism of 4(7)‐aminobenzimidazoles and 5(6)‐aminobenzimidazoles has been determined and compared with B3LYP/6‐311 + + G(d,p) calculations confirming the clear predominance of the 4‐amino tautomer and the slight preference for the 6‐amino tautomer. GIAO‐calculated absolute shieldings compare well with experimental chemical shifts. Copyright © 2008 John Wiley & Sons, Ltd.     

The structure of 1-formyl-3-phenyl-Δ-pyrazoline in the gas phase (DFT calculations), in solution (NMR) and in the solid state (X-ray crystallography)

The molecular structure of 1-formyl-3-phenyl-Δ²-pyrazoline was determined by X-ray crystallography (triclinic, P-1). The geometry thus obtained was compared with that obtained by DFT calculations. The GIAO method was used to calculate absolute shieldings, which agree conveniently with those measured by ¹³C and ¹⁵N NMR. The title compound appears to be an essentially planar molecule.     

Structural determination of Zn and Cd-DTPA complexes: MS, infrared, (13)C NMR and theoretical investigation

The joint application of MS, infrared and (13)C NMR techniques for the determination of metal-DTPA structures (metal=Zn and Cd; DTPA=diethylenetriaminepentacetic acid) is reported. Mass spectrometry allowed determining the 1:1 stoichiometry of the complexes, while infrared analysis suggested that both nitrogen and carboxyl groups are sites for complexation. The (13)C NMR spectrum for the cadmium-containing complex evidenced the existence of free and complexed carboxyl groups, due to a straight singlet at 179.0 ppm (free carboxylic (13)C) and to two broad singlets or a broad doublet at 178.3 ppm (complexed carboxylic (13)C, (2)J(Cd-C(=O))=45.2 Hz). A similar interpretation might be given for the zinc derivative and, with the aid of DFT calculations, structures for both complexes were then proposed.     

Solid-state NMR studies of pharmaceutical solids in polymer matrices

Biodegradable drug-delivery systems can be formulated to release drug for hours to years and have been used for the controlled release of medications in animals and humans. An important consideration in developing a drug-delivery matrix is knowledge of the long-term stability of the form of the drug and matrix after formulation and any changes that might occur to the drug throughout the delivery process. Solid-state NMR spectroscopy is an effective technique for studying the state of both the drug and the matrix. Two systems that have been studied using solid-state NMR spectroscopy are presented. The first system studied involved bupivacaine, a local anesthetic compound, which was incorporated into microspheres composed of tristearin and encapsulated using a solid protein matrix. Solid-state ¹³C NMR spectroscopy was used to investigate the solid forms of bupivacaine in their bulk form or as incorporated into the tristearin/protein matrix. Bupivacaine free base and bupivacaine-HCl have very different solid-state NMR spectra, indicating that the molecules of these compounds pack in different crystal forms. In the tristearin matrix, the drug form could be determined at levels as low as 1:100 (w/w), and the form of bupivacaine was identified upon loading into the tristearin/protein matrix. In the second case, the possibility of using solid-state ¹³C NMR spectroscopy to characterize biomolecules lyophilized within polymer matrices is evaluated by studying uniformly ¹³C-labeled asparagine (Asn) in 1:250 (w/w) formulations with poly(vinyl pyrrolidone) (PVP) and poly(vinyl alcohol) (PVA). This work shows the capability of solid-state NMR spectroscopy to study interactions between the amino acid and the polymer matrix for synthetic peptides and peptidomimetics containing selective ¹³C labeling at the Asn residue.     

Mercury(II) cyanide complexes with alkyldiamines: solid-state/solution NMR,computational, and antimicrobial studies

Mercury cyanide complexes of alkyldiamines (1–6), [Hg(L)(CN)₂] (where L?=?en (1,2-diaminoethane), pn (1,3-diaminopropane), N-Me-en, N, N′-Me₂-en, N, N′-Et₂-en, and N, N′-ipr₂-en), have been synthesized and characterized by elemental analysis, IR, ¹³C, and ¹⁵N solution NMR in DMSO-d₆, as well as ¹³C, ¹⁵N, and ¹⁹⁹Hg solid-state NMR spectroscopy. Complexes 1 and 2 have been studied computationally, built and optimized by GAUSSIAN03 using DFT at B3LYP level with LanL2DZ basis set. Binding modes of en and bn (where bn?=?1,4-diaminobutane) toward Hg(CN)₂ are completely different. Complexes with en and pn show chelating binding to Hg(II), while bn behaves as a bridging ligand to form a polymeric structure, [Hg(CN)₂-bn]_∞ [B.A. Al-Maythalony, M. Fettouhi, M.I.M. Wazeer, A.A. Isab. Inorg. Chem. Commun., 12, 540 (2009).]. The solution ¹³C NMR of the complexes demonstrates a slight shift of the ?C≡N (0.9 to 2?ppm) and ?C–NH₂ (0.25 to 6?ppm) carbon resonances, while the other resonances are relatively unaffected. ¹⁵N labeling studies have shown involvement of alkyldiamine ligands in coordination to the metal. The principal components of the ¹³C, ¹⁵N, and ¹⁹⁹Hg shielding tensors have been determined from solid-state NMR data. Antimicrobial activity studies show that the complexes exhibit higher antibacterial activities toward various microorganisms than Hg(CN)₂.     

Structure and molecular dynamics of solid-state inclusion complexes of cyclodextrin and permethylated cyclodextrin with benzaldehyde studied by high-resolution CP/MAS13C NMR

The structure and molecular dynamics of the benzaldehyde inclusion-complexes with -and-cyclodextrins and permethylated -cyclodextrin in the solid state have been studied by high-resolution cross-polarization/magic angle sample-spinning¹³C NMR spectroscopy. It is shown that the guest benzaldehyde molecule undergoes motion in the host cyclodextrin cavity and the rate of motion depend on the cavity size. In the -cyclodextrin complex, compared to -and permethylated -cyclodextrin complexes, the benzaldehyde motion is severely restricted, but under high-vacuum benzaldehyde is released more easily from the cavity.     

Solid State NMR of Drugs: Soluble Aspirin

Abstract

Natural abundance ¹³C NMR spectra of a soluble aspirin and model mixtures of acetylsalicylic acid with buffering components have been recorded in the solid state by using the combined techniques of cross polarization, high-power decoupling and magic-angle spinning. The solid-state spectrum of the soluble aspirin tablet showed more resonances than the solution spectrum. These multiplicities were originated in the buffer mixture containing citric and tartaric acid, as well as their salts. Solid-state ¹³C NMR was therefore found to provide information that is lost in the solution spectrum due to the fast proton exchange between the organic acids and their conjugated salts.     

Structure and tautomerism of 4-bromo substituted 1H-pyrazoles

The tautomerism in the solid state and in solution of five 4-bromo-1H-pyrazoles has been studied by multinuclear magnetic resonance spectroscopy and, for one of them, by X-ray crystallography (3,4-dibromo-5-phenyl-1H-pyrazole). When there is a bromine atom at position 3(5), in all cases, the tautomer present in the solid state is the 3-bromo one. In solution, the same tautomer is the major one. DFT calculations justify the predominance of 3-bromo tautomers over 5-bromo ones and provide some useful chemical shifts obtained through GIAO calculations.     

Assessment of historic Tilia codrata wood by solid-state C CPMAS NMR spectroscopy

Historic lime (Tilia cordata Mill.) wood samples, differing by their provenance, conservation status and period have been investigated by solid-state carbon-13 cross polarization magic angle sample spinning nuclear magnetic resonance (¹³C CPMAS NMR) spectroscopy. Structural and chemical modifications were assessed by comparing the historic samples with a reference wood sample. The conventional NMR measurements followed by the ¹³C resonance integral intensities of the wood samples have been carried out in order to acquire information of the chemical changes due to the natural ageing process taking place over the years. The main results concern the decrease of the carbohydrates moiety, especially the decrease of the hemicelluloses and amorphous cellulose signals, while the signals for aliphatic and methoxyl carbons from lignin present and increase of the intensity up to 120 years then start to decrease. At the same time a slight widening of the amorphous carbohydrate signals was observed, which may evidence the occurring of some chemical rearrangements, with the formation of new chemical species. These lead in the ¹³C NMR spectra to the line broadening of the signals induced by their chemical shifts dispersion.     

Solid-state C NMR and SAXS characterization of the amorphous phase in low-molecular weight poly(ethylene oxide)s

Low-molecular weight poly(ethylene oxide)s (PEO) with extended, once or twice folded chains (as characterized by SAXS), were investigated by solid-state ¹³C NMR spectra measured under conditions to detect only the signal of the narrow line component. The direct detection and integrated intensities of the signals from hydroxy-terminated chain-end units in these spectra confirm that the narrow line component corresponds to the noncrystalline (amorphous) phase. The NMR line of PEO carbons adjacent to the hydroxy end-groups was used as an intensity standard to obtain information on the mean number of carbons per chain contributing to the amorphous phase. Assuming that amorphous phase is formed by chain ends (cilia) and folds it follows from the spectra that the length of folds is 6-7 monomer units; cilia are 2-3 monomer units long.     

Solid-state Na and C NMR characterization of Na3C60

Two separate samples of Na₃C₆₀ were prepared by direct reaction of C₆₀ with sodium metal vapor, and subjected to different annealing times of 10 days and 16 days. Solid-state ¹³C and ²³Na NMR, along with elemental analysis, powder X-ray diffraction (XRD) and Raman spectroscopy, were used to characterize both samples. The Raman spectra of both materials have a single peak at 1447 cm⁻¹ which correspond to the A_g peak of C₆₀³⁻, consistent with the stoichiometry of Na_xC₆₀ with x=3. The powder XRD patterns are also virtually identical for both samples. However, solid-state ²³Na and ¹³C NMR spectra of the two samples are significantly different, suggesting a relationship between annealing times and the final structure of the alkali fulleride. Variable-temperature ²³Na magic-angle spinning (MAS) NMR experiments reveal the existence of two or three distinct sodium species and reversible temperature-dependent diffusion of sodium ions between octahedral and tetrahedral interstitial sites. ¹³C MAS NMR experiments are used to identify resonances corresponding to free C₆₀ and fulleride species, implying that the samples are segregated-phase materials composed of C₆₀ and non-stoichiometric Na₃C₆₀. Variable-temperature ¹³C MAS NMR experiments reveal temperature-dependent motion of the fullerides.     

Structure Elucidation and NMR Characterization of Two New Cyclophane Derivatives

In the course of our on-going investigation to develop synthetic methods for helical cyclophanes using Diels–Alder methodology, a great variety of polycyclic aromatic compounds have been formed. In some cases, the cycloaddition reactions, in addition to the target compounds, gave rise to unexpected products, which were identified by spectroscopic methods. The structure determination based on NMR measurements and semiempirical calculations of two such new compounds are presented in this paper.