On the origin of the ultrafast internal conversion of electronically excited pyrimidine bases

The ultrafast radiationless decay of photoexcited uracil and cytosine has been investigated by ab initio quantum chemical methods based on CIS and CR-EOM-CCSD(T) electronic energy calculations at optimized CIS geometries. The calculated potential energy profiles indicate that the S(1) --> S(0) internal conversion of the pyrimidine bases occurs through a barrierless state switch from the initially excited (1)pipi state to the out-of-plane deformed excited state of biradical character, which intersects the ground state at a lower energy. This three-state nonradiative decay mechanism predicts that replacement of the C5 hydrogen by fluorine introduces an energy barrier for the initial state switch, whereas replacement of the C6 hydrogen by fluorine does not. These predictions are borne out by the very different fluorescence yields of 5-fluorinated bases relative to the corresponding 6-fluorinated bases. It is concluded from these results that the origin of the ultrafast radiationless decay is the same for the two pyrimidine bases.     

Theoretical studies toward understanding the excited state dynamics of a bichromophoric molecule

By means of the time-dependent density functional theory, the authors study the torsional dynamics of the lowest singlet electronic excited state (S1) of a bichromophoric molecule, 2-(9-anthryl)-1H-imidazo [4,5-f]-phenanthroline (AIP). The intramolecular dynamical relaxation process, the S1 potential energy surface, and the vibrationally resolved electronic absorption and fluorescence spectra are estimated. The results reveal that the strong electron-nuclear coupling leads to a dynamic structural distortion in S1 state so that the mirror-image symmetry of absorption and fluorescence spectra of AIP breaks down. The torsional motion between the donor and acceptor moieties in AIP favors the intramolecular electronic energy transfer process. The transfer rate is dominated by the relaxation time along S1 low-frequency torsional motion.     

Ab initio based surface-hopping dynamics study on ultrafast internal conversion in cyclopropanone

Cyclopropanone exhibits an intriguing phenomenon that the fluorescence from the S(1) state disappears below 365 nm. This is ascribed to the ultrafast S(1) → S(0) internal conversion process via conical intersection, which deprives opportunity of the fluorescence emission. In this work, we have used ab initio based surface hopping dynamics method to study vibrational-mode-dependent S(1) → S(0) internal conversion of cyclopropanone. A new conical intersection between the S(1) and S(0) states is determined by the state-averaged CASSCF/cc-pVDZ calculations, which is confirmed to play a critical role in the ultrafast S(1) → S(0) internal conversion by the nonadiabatic dynamics simulations. It is found that the internal conversion occurs more efficiently when the initial kinetic energies are distributed in the four vibrational modes related to the C═O group, especially in the C-O stretching and the O-C-C-C out-of-plane torsional modes. Meanwhile, the S(1) lifetime and the time scale of the S(1) → S(0) internal conversion are estimated by the ab initio based dynamics simulations, which is consistent with the ultrafast S(1) → S(0) internal conversion and provides further evidence that the ultrafast internal conversion is responsible for the fluorescence disappearance of cyclopropanone.     

Theoretical study toward understanding the catalytic mechanism of pyruvate decarboxylase

Density functional calculations are employed to explore the mechanisms of all elementary reaction steps involved in the catalytic cycle of pyruvate decarboxylase (PDC). Different models are constructed for mimicking the involvement of some key residues in a certain step. The effect of the protein framework on the potential energy profiles of active site models is approximately modeled by fixing some freedoms, based on the crystal structure of the PDC enzyme from Saccharomyces cerevisiae (ScPDC). Our calculations confirm that Glu51 is the most important residue in the formation of the ylide and the release of acetaldehyde via the proton relay between Glu51, N1', and the 4'-amino group of thiamine diphosphate. The presence of Glu477 and Asp28 residues makes the decarboxylation of lactylthiamin diphosphate (LThDP) an endothermic process with a significant free energy barrier. The protonation of the alpha-carbanion to form 2-(1-hydroxyethyl)-thiamin diphosphate is found to go through a concerted double proton transfer transition state involving both Asp28 and His115 residues. The final step, acetaldehyde release, is likely to proceed through a concerted transition state involving carbon-carbon bond-breaking and the deprotonation of the alpha-hydroxyl group. The decarboxylation of LThDP and the protonation of the alpha-carbanion are two rate-limiting steps, relative to the facile occurrence of the ylide formation and acetaldehyde release. The catalytic roles of residues Glu51, Glu477, Asp28, and Gly417 in the active site of ScPDC in individual steps elucidated from the present study are in good agreement with those derived from site-directed mutagenesis.     

Transient lens spectroscopy of ultrafast internal conversion processes in citranaxanthin

The ultrafast internal conversion (IC) dynamics of the apocarotenoid citranaxanthin have been studied for the first time by means of two-color transient lens (TL) pump-probe spectroscopy. After excitation into the high-energy edge of the S2 band by a pump pulse at 400 nm, the subsequent intramolecular processes were probed at 800 nm. Experiments were performed in a variety of solvents at room temperature. Upper limits for the S2 lifetime tau2 on the order of 100-200 fs are estimated. The S1 lifetime tau1 varies only slightly between solvents (10-12 ps), and the only clear decrease is observed for methanol (8.5 ps). The findings are consistent with earlier results from transient absorption studies of other apocarotenoids and carotenoid ketones and transient lens experiments of C40 carbonyl carotenoids. Possible reasons for the observed weak solvent dependence of tau1 for citranaxanthin are discussed.     

Ab initio studies on the radiationless decay mechanisms of the lowest excited singlet states of 9H-adenine

The mechanisms that are responsible for the rapid deactivation of the (1)npi and( 1)pipi excited singlet states of the 9H isomer of adenine have been investigated with multireference ab initio methods (complete-active-space self-consistent-field (CASSCF) method and second-order perturbation theory based on the CASSCF reference (CASPT2)). Two novel photochemical pathways, which lead to conical intersections of the S(1) excited potential-energy surface with the electronic ground-state surface, have been identified. They involve out-of-plane deformations of the six-membered aromatic ring via the twisting of the N(3)C(2) and N(1)C(6) bonds. These low-lying conical intersections are separated from the minimum energy of the lowest ((1)npi) excited state in the Franck-Condon region by very low energy barriers (of the order of 0.1 eV). These properties of the S(1) and S(0) potential-energy surfaces explain the unusual laser-induced fluorescence spectrum of jet-cooled 9H-adenine, showing sharp structures only in a narrow energy interval near the origin, as well as the extreme excess-energy dependence of the lifetime of the singlet excited states. It is suggested that internal-conversion processes via conical intersections, which are accessed by out-of-plane deformation of the six-membered ring, dominate the photophysics of the lowest vibronic levels of adenine in the gas phase, while hydrogen-abstraction photochemistry driven by repulsive (1)pisigma states may become competitive at higher excitation energies. These ultrafast excited-state deactivation processes provide adenine with a high degree of intrinsic photostability.     

Theoretical investigation of internal conversion in chromyl chloride

The internal conversion process from single vibronic levels in the first excited electronic state S₁ of chromyl chloride was theoretically investigated. On the basis of this analysis certain important features of the experimentally observed fluorescence decay from S₁ have been understood. Implications of the obtained results to multiphoton chemistry are discussed.     

Time-resolved photoelectron and photoion fragmentation spectroscopy study of 9-methyladenine and its hydrates: a contribution to the understanding of the ultrafast radiationless decay of excited DNA bases

The excited state dynamics of the purine base 9-methyladenine (9Me-Ade) has been investigated by time- and energy-resolved photoelectron imaging spectroscopy and mass-selected ion spectroscopy, in both vacuum and water-cluster environments. The specific probe processes used, namely a careful monitoring of time-resolved photoelectron energy distributions and of photoion fragmentation, together with the excellent temporal resolution achieved, enable us to derive additional information on the nature of the excited states (pipi*, npi*, pisigma*, triplet) involved in the electronic relaxation of adenine. The two-step pathway we propose to account for the double exponential decay observed agrees well with recent theoretical calculations. The near-UV photophysics of 9Me-Ade is dominated by the direct excitation of the pipi* ((1)L(b)) state (lifetime of 100 fs), followed by internal conversion to the npi* state (lifetime in the ps range) via conical intersection. No evidence for the involvement of a pisigma* or a triplet state was found. 9Me-Ade-(H(2)O)(n) clusters have been studied, focusing on the fragmentation of these species after the probe process. A careful analysis of the fragments allowed us to provide evidence for a double exponential decay profile for the hydrates. The very weak second component observed, however, led us to conclude that the photophysics were very different compared with the isolated base, assigned to a competition between (i) a direct one-step decay of the initially excited state (pipi* L(a) and/or L(b), stabilised by hydration) to the ground state and (ii) a modified two-step decay scheme, qualitatively comparable to that occurring in the isolated molecule.     

Transient and stationary spectroscopy of cytochrome c: ultrafast internal conversion controls photoreduction

Photoreduction of cytochrome c (Cyt c) has been reinvestigated using femtosecond-to-nanosecond transient absorption and stationary spectroscopy. Femtosecond spectra of oxidized Cyt c, recorded in the probe range 270-1000 nm, demonstrate similar evolution upon 266 or 403 nm excitation: an ultrafast 0.3 ps internal conversion followed by a 4 ps vibrational cooling. Late transient spectra after 20 ps, from the cold ground-state chromophore, reveal a small but measurable signal from reduced Cyt c. The yield phi for Fe3+-->Fe2+ photoreduction is measured to be phi(403) = 0.016 and phi(266) = 0.08 for 403 and 266 nm excitation. These yields lead to a guess of the barrier E(f)(A) = 55 kJ mol(-1) for thermal ground-state electron transfer (ET). Nanosecond spectra initially show the typical absorption from reduced Cyt c and then exhibit temperature-dependent sub-microsecond decays (0.5 micros at 297 K), corresponding to a barrier E(A)(b) = 33 kJ mol(-1) for the back ET reaction and a reaction energy DeltaE = 22 kJ mol(-1). The nanosecond transients do not decay to zero on a second time scale, demonstrating the stability of some of the reduced Cyt c. The yields calculated from this stable reduced form agree with quasistationary reduction yields. Modest heating of Cyt c leads to its efficient thermal reduction as demonstrated by differential stationary absorption spectroscopy. In summary, our results point to ultrafast internal conversion of oxidized Cyt c upon UV or visible excitation, followed by Fe-porphyrin reduction due to thermal ground-state ET as the prevailing mechanism.     

Nonradiative deexcitation dynamics of 9H-adenine: an OM2 surface hopping study

The nonradiative relaxation of 9H-adenine was studied at the semiempirical OM2/MR-CI level using the surface-hopping approach. Geometry optimizations of energy minima and conical intersections as well as single-point calculations of excitation energies at critical points were performed to characterize the relevant potential energy surfaces of 9H-adenine and to assess the accuracy of the OM2 results. Surface-hopping calculations were performed to describe the nonradiative dynamics of 9H-adenine after vertical excitation into the optically active state. They showed that the deexcitation process is mainly governed by a two-step relaxation consisting of an ultrashort component and a longer component. These findings compare well with experimental results from time-resolved photoelectron spectroscopy.     

Theoretical study of the internal conversion of sulfoxide precursors of poly-isothianaphthene and related polymers

In the present contribution, we theoretically investigate the suitability of the sulfoxide route for the synthesis of conjugated polymers of relevance for the fabrication of low-band gap materials with improved characteristics. The study focuses specifically on the internal elimination (E(i)) reactions of sulfoxide precursors of model oligomers of trans- and cis-poly-isothianaphtene (PITN), trans-poly-isothianaphtene vinylene (PITNV), and trans-poly-(ethylene dioxythiophene vinylene) (PEDOTV). These reactions have been characterized in detail by means of Density Functional Theory, along with the MPW1K functional (Modified Perdew-Wang 1-parameter model for kinetics).     

Coherent oscillation and ultrafast internal conversion of tetrafluoroethene after excitation at 197 nm.

C2F4 was excited by using a 150 fs pulse in its longest-wavelength band to the Rydberg (3 s) state and then probed by photoionization techniques at 810 nm. The molecule relaxes in two consecutive steps (time constants 29 and 118 fs), probably via the pipi* state, which is lowered in energy by stretching and twisting the C=C bond. A coherent oscillation (350 fs) was found, which we assign to an overtone of the twist vibration (47.6 cm(-1)) in this state. we also conclude that dissociation to singlet and some triplet CF2 only takes place in the hot ground state of C2F4, from where also the C2F4 triplet state is populated. The potentials and their conical intersections are discussed with respect to relaxation and dissociation, including also some new considerations of thermal processes.     

Ultrafast internal conversion in ethylene. I. The excited state lifetime

Using a combined theoretical and experimental approach, we investigate the non-adiabatic dynamics of the prototypical ethylene (C(2)H(4)) molecule upon π → π? excitation. In this first part of a two part series, we focus on the lifetime of the excited electronic state. The femtosecond time-resolved photoelectron spectrum (TRPES) of ethylene is simulated based on our recent molecular dynamics simulation using the ab initio multiple spawning method with multi-state second order perturbation theory [H. Tao, B. G. Levine, and T. J. Martinez, J. Phys. Chem. A 113, 13656 (2009)]. We find excellent agreement between the TRPES calculation and the photoion signal observed in a pump-probe experiment using femtosecond vacuum ultraviolet (hν = 7.7 eV) pulses for both pump and probe. These results explain the apparent discrepancy over the excited state lifetime between theory and experiment that has existed for ten years, with experiments [e.g., P. Farmanara, V. Stert, and W. Radloff, Chem. Phys. Lett. 288, 518 (1998) and K. Kosma, S. A. Trushin, W. Fuss, and W. E. Schmid, J. Phys. Chem. A 112, 7514 (2008)] reporting much shorter lifetimes than predicted by theory. Investigation of the TRPES indicates that the fast decay of the photoion yield originates from both energetic and electronic factors, with the energetic factor playing a larger role in shaping the signal.     

DNA excited-state dynamics: ultrafast internal conversion and vibrational cooling in a series of nucleosides

To better understand DNA photodamage, several nucleosides were studied by femtosecond transient absorption spectroscopy. A 263-nm, 150-fs ultraviolet pump pulse excited each nucleoside in aqueous solution, and the subsequent dynamics were followed by transient absorption of a femtosecond continuum pulse at wavelengths between 270 and 700 nm. A transient absorption band with maximum amplitude near 600 nm was detected in protonated guanosine at pH 2. This band decayed in 191 +/- 4 ps in excellent agreement with the known fluorescence lifetime, indicating that it arises from absorption by the lowest excited singlet state. Excited state absorption for guanosine and the other nucleosides at pH 7 was observed in the same spectral region, but decayed on a subpicosecond time scale by internal conversion to the electronic ground state. The cross section for excited state absorption is very weak for all nucleosides studied, making some amount of two-photon ionization of the solvent unavoidable. The excited state lifetimes of Ado, Guo, Cyd, and Thd were determined to be 290, 460, 720, and 540 fs, respectively (uncertainties are +/-40 fs). The decay times are shorter for the purines than for the pyrimidine bases, consistent with their lower propensity for photochemical damage. Following internal conversion, vibrationally highly excited ground state molecules were detected in experiments on Ado and Cyd by hot ground state absorption at ultraviolet wavelengths. The decays are assigned to intermolecular vibrational energy transfer to the solvent. The longest time constant observed for Ado is approximately 2 ps, and we propose that solute-solvent H-bonds are responsible for this fast rate of vibrational cooling. The results show for the first time that excited singlet state dynamics of the DNA bases can be directly studied at room temperature. Like sunscreens that function by light absorption, the bases rapidly convert dangerous electronic energy into heat, and this property is likely to have played a critical role in life's early evolution on earth.     

Ultrafast internal conversion of excited cytosine via the lowest pipi electronic singlet state

Computational evidence at the CASPT2 level supports that the lowest excited state pipi* contributes to the S1/S0 crossing responsible for the ultrafast decay of singlet excited cytosine. The computed radiative lifetime, 33 ns, is consistent with the experimentally derived value, 40 ns. The nOpi* state does not play a direct role in the rapid repopulation of the ground state; it is involved in a S2/S1 crossing. Alternative mechanisms through excited states pisigma* or nNpi* are not competitive in cytosine.     

Theoretical study on the excited states of HCN

In the flash-photolysis of oxazole, iso-oxazole, and thiozole a transient band system was observed in the region 2500-3050 angstroms. This band system was attributed to a meta-stable form of HCN, i.e., either HNC or triplet HCN. Theoretical investigations have been carried out on the ground and excited states of HCN to characterize this and other experimentally observed transitions. The predicted geometries are compared with the experiment and earlier theoretical calculations. The present calculations show that the band system in the region 2500-3050 A corresponds to the transition 4 3-A' <-- 1 3-A' of HCN.     

Solvent-dependent ultrafast internal conversion dynamics of n'-apo-beta-carotenoic-n'-acids (n = 8, 10, 12)

The ultrafast internal conversion dynamics of 12'-apo-beta-carotenoic-12'-acid (12'CA), 10'-apo-beta-carotenoic-10'-acid (10'CA) and 8'-apo-beta-carotenoic-8'-acid (8'CA) have been investigated by femtosecond pump-probe spectroscopy. The three apocarotenoic acids were excited to the S(2) state with different excess energies. Time constants tau(1) for the IC process S(1)/ICT --> S(0) were measured by probing the dynamics at 390 nm (S(0) --> S(2)), 575 nm (S(1)/ICT --> S(n)), 850, 860 and 890 nm (S(2) --> S(n) and S(1)/ICT --> S(0)). In nonpolar solvents, the observed reduction of the tau(1) values with increasing conjugation length of the acids is consistent with a reduction of the energy gap between the S(1)/ICT and S(0) states. The values are in good agreement with those of the corresponding apocarotenals studied previously in our groups. In polar solvents, a pronounced reduction of tau(1) values was observed for 12'CA, however the behavior was different from that observed for the respective aldehyde 12'-apo-beta-caroten-12'-al studied previously: First, the degree of tau(1) reduction in methanol was milder for 12'CA (218 --> 55 ps) than for 12'-apo-beta-caroten-12'-al (220 --> 8 ps). Secondly, for 12'CA the plateau of solvent independent tau(1) values extended further into the mid-polar range (up to 0.5 on the Deltaf scale) than previously observed for the 12'-aldehyde. For 10'CA the polarity effect on the tau(1) values was weaker ( approximately 71 ps in n-hexane and 34 ps in methanol) and for 8'CA it disappeared completely ( approximately 24 ps averaged over all solvents). The polarity-induced reduction of tau(1) is likely due to the stabilization of an intramolecular charge transfer state in polar solvents. This S(1)/ICT state is also responsible for the stimulated emission in the near IR, which has been observed in this specific class of carotenoids with a terminal carboxyl group for the first time. The occurrence of stimulated emission in the near IR region is also consistent with the steady-state fluorescence spectra which are reported along with the absorption spectra of these species. Possible reasons for the different behavior of the apocarotenoic acids compared to the respective aldehydes are discussed.     

Computational study toward understanding the photodissociation mechanism of sarin

The potential energy surface for sarin (C₄H₁₀FO₂P) dissociation into (CH₃)₂CHO+PO(F)(CH₃), CH₃+(CH₃)₂CHOPO(F), and F+(CH₃)₂CHOPO(CH₃) in the T₁ and S₁ states were investigated at the complete‐active‐space self‐consistent field (CASSCF) with the 6‐31G** and aug‐cc‐PVDZ basis sets. The different reaction pathways are characterized on the basis of the computed potential energy surface and surface crossing point, the time‐dependent density functional theory (TD‐DFT) was used to calculate the vertical energies based on the CAS(8,7)/6‐31G** optimized excited structures, which may provide some new insights into the mechanism of the ultraviolet photo‐degradation of sarin molecules. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Origin of ultrafast excited state dynamics of 1-nitropyrene

Time-resolved emission measurements in subpicosecond time domain have been carried out for 1-nitropyrene in different solvents to understand the mechanism for the observed ultrafast decay of its first excited singlet state. Excited-state dynamics of 1-nitropyrene is found to be independent of the solvent viscosity. This result contradicts the proposition in the literature (J. Phys. Chem. A 2007, 111, 552) that the ultrafast decay in 1-nitropyrene is due to the large amplitude torsional motion of the nitro group around the pyrene moiety. Excited-state dynamics of 1-nitropyrene in solvents with different dielectric constants shows that excited-state lifetime suddenly increases after a certain value of the dielectric constant. Detailed quantum chemical calculations have been carried out to understand the process that is responsible for the observed effect of the dielectric constant on the excited-state dynamics of 1-nitropyrene. It is seen that the excited-state lifetime and the singlet-triplet energy gap follow similar variation with the dielectric constant of the medium. Such a correlation between the excited-state lifetime and the singlet-triplet energy gap supports the fact that the observed ultrafast decay for 1-nitropyrene is due to an efficient intersystem crossing rather than to the torsional motion of the nitro group as proposed in the literature.     

Theoretical prediction of the S1-S0 internal conversion of 6-cyanoazulene

Ab initio complete active-space self-consistent field (CASSCF) and second-order Multireference M?ller-Plesset perturbation (MRMP2) calculations were performed to examine the S1-S0 internal conversion of 6-cyanoazulene (6CNAZ). The azulene skeletons of 6CNAZ in S0 and S1 have features that resemble those of azulene. The stable geometry in S0 is characterized by (i) a C2v structure, (ii) an aromatic bond-equalized structure in which all the peripheral skeletal bond distances resemble an aromatic CC bond distance, and (iii) a single bond character of the transannular bond. The stable geometry in S1 is characterized by a nonaromatic C2v structure. Contrary to similarities of the stable geometries in S0 and S1 between 6CNAZ and azulene, the conical intersection (S1/S0-CIX) of 6CNAZ is different from that of azulene. The S1/S0-CIX of 6CNAZ takes a planar structure, whereas that of azulene takes a nonplanar structure in the seven-membered ring (Amatatsu, Y.; Komura, K. J. Chem. Phys. 2006, 125, 174311/1-8). On the basis of those computational findings, we predict the photochemical behavior of 6CNAZ in the S1-S0 internal conversion.