Circular dichroism spectra and absolute configuration of some aryl methyl sulfoxides

The absorption and circular dichroism (CD) spectra of three aryl sulfoxides, i.e. (-)-(S)-1-naphthyl methyl sulfoxide, (S)-1, (-)-(S)-1-(2-methyl)naphthyl methyl sulfoxide, (S)-2 and (-)-(S)-9-phenanthryl methyl sulfoxide, (S)-3, have been interpreted by means of the coupled oscillator model formulated by DeVoe. Theoretical spectra have been calculated starting from input geometries provided by molecular mechanics (MMX) calculations and by employing standard spectroscopic parameters to describe the allowed transitions of the aromatic and the sulfoxide chromophores. The satisfactory agreement between the predicted and experimental spectra allows us to confirm the configurational assignment of these compounds as (-)/(S). The analysis of CD spectra, affording the right assignment of the absolute configuration (AC) of the alkyl aryl sulfoxides, then offers a practical alternative to the more complex vibrational circular dichroism spectroscopy and ab initio optical rotation calculation techniques that have been used very recently to assign the AC of (-)-2 and (-)-3.     

Novel chiral pyromellitdiimide (1,2,4,5-benzenetetracarboxydiimide) dimers and trimers: exploring their structure,electronic transitions,and exciton coupling

The chiral but highly symmetrical acyclic and cyclic pyromellitic diimide dimers and trimers 2-5 have been obtained and characterized for the first time. The pyromellitdiimide chromophores in these molecules are linked by a rigid diequatorially 1,2-disubstituted cyclohexane skeleton. The structures of the compounds have been determined in detail by molecular modeling and, in the case of cyclic dimer 4 and trimer 5, by means of X-ray diffraction analysis. The electronically excited states of the pyromellitdiimide chromophore (1a) have been studied in these and other model compounds by means of linear dichroism (LD), magnetic circular dichroism (MCD), and circular dichroism (CD) spectroscopy. CD spectra of the rigid cyclic trimer 5 have provided the most detailed information on the excited states of the pyromellitdiimide chromophore. The low-energy tail (340-360 nm) of the absorption envelope can be assigned to out-of-plane polarized n-pi* transitions (I, II). The higher energy bands are due to contributions from up to six pi-pi* transitions, these being polarized either along the long (IV-VI, VIII) or short axis (III, VII). The results of ab initio CIS/cc-pVDZ and semiempirical INDO/S-CI calculations have been compared with the experimental data. CD Cotton effects in the region 200-260 nm, which result from exciton interactions between electric dipole allowed transitions of two pyromellitdiimide chromophores in compounds 2-5, provide reliable and useful information concerning the conformation and absolute configuration of these molecules, which may be extrapolated to other oligoimide systems.     

A single chiroptical spectroscopic method may not be able to establish the absolute configurations of diastereomers: dimethylesters of hibiscus and garcinia acids

Electronic circular dichroism (ECD), optical rotatory dispersion (ORD), and vibrational circular dichroism (VCD) spectra of hibiscus acid dimethyl ester have been measured and analyzed in combination with quantum chemical calculations of corresponding spectra. These results, along with those reported previously for garcinia acid dimethyl ester, reveal that none of these three (ECD, ORD, or VCD) spectroscopic methods, in isolation, can unequivocally establish the absolute configurations of diastereomers. This deficiency is eliminated when a combined spectral analysis of either ECD and VCD or ORD and VCD methods is used. It is also found that the ambiguities in the assignment of absolute configurations of diastereomers may also be overcome when unpolarized vibrational absorption is included in the spectral analysis.     

Stepwise evolution of the structure and electronic properties of DNA

The optical properties of a family of duplex DNA conjugates possessing from 1 to 11 A:T base pairs and covalently attached stilbene chromophores at both ends have been investigated. As few as from two to four base bairs are needed to establish base-pair absorption and circular dichroism spectra similar to those of longer oligomers. The stilbene chromophores exhibit exciton-coupled circular dichroism, which can be observed even with 11 intervening base pairs, a distance of ca. 40 A. The dependence of the sign and amplitude of these spectra reveals the ability of B-DNA to serve as a helical ruler.     

Konformation und Circulardichroismus der Sesquiterpene vom Trichothecan-Typ und deren makrocyclischen Estern

The circular dichroism of keto derivatives with trichothecane skeleton and some of their rearrangement products has been measured. The sign (and sometimes even the magnitude) of all COTTON effects can be explained by applying the respective rules for the cyclohexanone, cyclopentanone, enone and ene-ester chromophores. Thus conformations could also be determined in those cases which did not follow unambiguously from conformational analysis. The conformation of the muconic acid moiety of the macrocyclic ring of verrucarin A is the same in dioxane solution as in the crystalline state.     

A two-chromophore model for two-photon circular dichroism

A discussion of two-photon circular dichroism due to dissymmetrically placed chromophores is presented. Using quantum electrodynamics, expressions are derived for the differential rates or absorption associated with an electronic transition which is electric dipole forbidden to a one-photon interaction. A complex field formulation enables effective interaction operators to be derived which are formally equivalent to those arising in the theory of induced circular dichroism. For non-equivalent chromophores, it is shown that a coupling mechanism provides the necessary chiral discrimination, whilst for equivalent chromophores there is an additional contribution from an interference term which becomes more important as the chromophore separation is decreased.     

Circular dichroism of polyethylenimine containing optically active thymine derivatives as grafted pendants

Optical properties of linear polyethylenimine containing optically active (+)- or (?)-2-(thymin-1-yl)propionyl group as grafted pendant were investigated by circular dichroism (CD) and compared with those of the related monomer and dimer model compounds. CD spectra of the polymer in neutral aqueous solution were different from those of related model compounds, which suggest that the polymer exists in some ordered conformation (at least locally) to allow exciton coupling of π–π^* (B_2u) transition in the base chromophores along the polymer chain. This ordered conformation tends to be randomized on heating. The effects of complementary base pairing on the CD spectra have also been studied by using a linear polyethylenimine containing (±)-2-(adenin-9-yl) propionyl grafts and its related monomer and dimer models.     

Circular dichroism of distorted helices. C(10)-Adamantyl and C(10)-tert-butyl biliverdins

Bulky adamantyl and tert-butyl substituents at the central carbon of biliverdins cause the intrinsic verdin helical conformation to distort, and this results in a shift in pigment color from blue to red. Such distorted `verdins' when derivatized as L-alanyl methyl ester bis-amides give modest circular dichroism Cotton effects.     

光学活性金属卟啉的磁手性效应研究

磁光学活性与自然光学活性均可用介质对左右圆偏振光的吸收之差来表示 .但自然光学活性和磁光学活性的物理机制是截然不同的 ,前者源于镜象不能互相重叠介质的非定域光学响应 ( nonlocaloptical response) ,而后者则是由于介质的时间反演对称性 ( time- reversal symmetry)被磁场打破所致 .理论分析表明 ,当介质的两种光学活性同时存在时 ,将会出现一个新的附加光学效应 ,这种磁光学活性与自然光学活性之间的交叉效应称为磁手性效应 ( magneto- chiral effect)或磁手二色性 ( magneto-chiral dichroism) [1,2 ] .磁手性效应通常很弱 ,直到 1…     

DNA molecular photonics

Synthetic DNA conjugates in which one or both ends of a short duplex is capped by a stilbene chromophore have been prepared and characterized crystallographically. Selective excitation of the chromophore can be used to initiate electron transfer processes in which a nucleobase serves as either an electron donor or an electron acceptor. These processes include hole- and electron injection and hole migration. The dynamics of these processes and its dependence on distance, driving force, and base sequence have been investigated by means of femtosecond time-resolved spectroscopy. Duplexes with identical chromophores at both ends have been used to study both the dynamics of electron transfer processes and exciton coupling between the two chromophores by means of circular dichroism spectroscopy. Duplexes with different chromophores can also be used to study distance dependence of both electron transfer and exciton coupling.     

Side Methyl Groups Control the Conformation and Contribute to Symmetry Breaking of Isoprenoid Chromophores

Ab initio DFT computations reveal that the essential structural and photophysical features of the conjugated π‐electron system of retinal and carotenoids are dictated by “innocent” methyl substituents. These methyl groups shape the conformation and symmetry of the isoprenoid chromophores by causing a sigmoidal distortion of the polyene skeleton and increasing its flexibility, which facilitates fitting to their binding pockets in proteins. Comparison of in vacuo conformations of the chromophores with their native (protein‐bound) conformations showed, surprisingly, that the peripheral groups and interactions with the protein environment are much less significant than the methyl side groups in tuning their structural features. The methyl side groups also contribute to a loss of symmetry elements specific to linear polyenes. In effect, the symmetry‐imposed restrictions on the chromophore electronic properties are disabled, which is of tremendous relevance to their photophysics. This is evidenced by their non‐negligible permanent dipole moments and by the simulated and experimentally measured circular dichroism spectra, which necessarily reflect the chirality of the conjugated π‐electron system.     

New open-chain tetrapyrroles as chromophores in the plant photoreceptor phytochrome

A series of six open-chain tetrapyrroles has been synthesized and used as chromophores for the plant photoreceptor protein phytochrome. The novel chromophores vary in the size of substituents 17 and 18 at ring D. This ring undergoes maximal conformational change upon light excitation ( Z --> E photoisomerization of the 15,16-double bond). Instead of methyl and vinyl substituents (positions 17, 18) as present in the native chromophore phytochromobilin, dimethyl, methyl and isopropyl, methyl and tert-butyl, ethyl and methyl, vinyl and methyl, and isopropyl and methyl substituents have been generated. All novel chromophores assemble with the apoprotein. The obtained chromoproteins show hypsochromic shifts of the absorbance maxima by 10 nm maximally, compared to the native pigment, except for the 17-isopropyl-18-methyl-substituted compound which showed a 100 nm hypsochromic shift of selectively the P r form. The assembly kinetics were slowed down in correlation to the increasing size of the substituents, with stronger effects for modified substituents at position 17. The thermal stability of the photoinduced P fr form for the 18-isopropyl and the 18- tert butyl substituents was even greater than that of the native pigments. Those chromophores carrying substituents at position 17 larger than the methyl group (ethyl and isopropyl) showed a very low stability of the respective P fr forms. Time-resolved detection of the P r to P fr conversion (laser-induced flash photolysis) revealed a slower formation of the P fr form for those chromophores carrying larger substituents at position 18, whereas the rise and decay kinetics of the early intermediates are only moderately changed. Introduction of larger substituents at position 17 (ethyl, vinyl, and isopropyl) causes drastic changes in the kinetics; in particular the formation of the first thermally stable intermediate, I 700, is significantly slowed, making a detection of its rise possible.     

Determination of the stereochemistry of condensation products between α,β-diamines and α,γ-dioxo compounds by circular dichroism, 1H NMR and x-ray diffraction

The absolute configuration of molecules containing two chromophores of the type -NH-CC-CO bridged by -?-?- have been studied in solution by UV absorption and circular dichroism. The spectra have been simulated by means of component curves shaped as skew gaussians. The data have been interpreted by means of exciton theory for coupled chromophores to give information about the relative orientation of the chromophores. The result is compared with the result of an X-ray structure determination of N,N'-bis(4-oxo-2-penten-2-yl)-R-1,2-diaminopropane.     

Chirale 2,2′-Polyoxaalkano-9,9′-spirobifluorene

Chiral 2,2′-polyoxaalkano-9,9′-spirobifluorenes From 2,2′-diacetyl-9,9′-spirobifluorene (2) , twelve chiral polyethers have been prepared as potential ion- and enantiomer-selective ionophores. The absolute configuration of the polyethers 15 – 17 , 19 – 22 , and 25 has been determined by chemical correlation with vespirenes [11] [29], by circular dichroism, and by X-ray analysis. The circular dichroism of 15 – 17 , 19 and 21 depends on the size of the macrocycle and indicates that the fluorene chromophores of 19 and 21 with 13- and 16-membered rings respectively deviate considerably from orthogonality.     

SPECTRAL STUDY OF THE PHOTOCHEMISTRY OF DIPYRROLE MODELS FOR BILIRUBIN BOUND TO HUMAN SERUM ALBUMIN

—Dipyrromethenones, which include xanthobilirubinic acid (I), its methyl ester (II) and the endo- vinyl analog of neoxanthobilirubinic acid methyl ester ("half bilirubin" methyl ester) (III) bind to human serum albumin (HSA) and thereby exhibit greatly increased fluorescence as well as induced circular dichroism in their long wavelength transitions. As determined from fluorescence studies, the "tightness" of the binding to HSA is, inter alia , inversely related to the inherent solubility of the dipyrromethenone in aqueous buffer. Fast (ps) configurational isomerization ( Z → E ) is the major pathway for decay of the first excited (singlet) states of the HSA-bound dipyrromethenones. A quantum yield of − 0.4 is associated with the Z → E isomerization. Binding to HSA enhances the lifetimes of the less thermodynamically stable E -isomers. The results of these studies of "half bilirubins" allow a clear evaluation of the effects of protein binding upon the photophysics and photochemistry of bilirubin.     

具有谷胱甘肽过氧化物酶活性的催化抗体的研究Ⅰ．谷胱甘肽特征全抗原的合成、表征及性质

用２，４－二硝基氯苯保护谷胱甘肽的巯基制出半抗原，再通过戊二醛共价反应使其与牛血清白蛋白表面的氨基结合，经超胶ＡｃＡ５４凝胶层析纯化，制备出有较强免疫原性的谷胱甘肽全抗原。用元素分析、红外光谱及核磁共振表征了半抗原的结构。电泳分析得全抗原分子量平均为８７０００道尔顿。光谱分析及圆二色谱研究表明其有较强的可见、紫外及荧光特征吸收，且抗原结构的紧密性增强。     

Progress in circular dichroism laser mass spectrometry

Circular dichroism in ion yield has promising new potentials for chiral analysis. Our progress of its development is described here. Circular dichroism in ion yield is achieved by resonance-enhanced multiphoton ionization. The feasibility of circular dichroism spectroscopy and quantitative determination of circular dichroism by this method is demonstrated. Several excitation schemes have been applied using different types of lasers, which vary in wavelength and repetition rate. Progress to improve the statistical error and thus the lower limit of measurable circular dichroism is described. This is achieved by adding achiral compounds or racemic mixtures of chiral compounds to the sample gas as reference substances and ionizing them by the same laser pulse. Therefore, in the mass spectrum of every single laser pulse, ion signals of sample and reference species appear both being subject to the same kind of instrumental fluctuations (in particular of laser pulse energy). In another approach, a laser repetition rate of 200 Hz allowed averaging of large numbers of laser pulses.      

Dynamic perturbation effects upon the circular dichroism intensity induced in an aggregate of dye chromophores bound to biopolymers

The dynamic perturbation effects of polarizable monomer perturbers upon the circular dichroism intensity arising from absorption transitions of an arbitrary aggregate of dye chromophores bound to a large host polymer are formulated using the linear response theory in the decorrelation approximation, where the interchromophoric retardation phase factors are eliminated by a first-order Taylor expansion which is compatible with the use of the retarded helix selection rules in the long-wavelength approximation. A space-averaged and closed-form formulation of the non-conservative circular dichroism intensity which is perturbed by intensity with the outside perturber transitions is derived in the limit of the weak dynamic perturbation where perturber—perturber interactions are negligible. The relevant formulation is applied in order to investigate the intercalation model dependence of the non-conservative circular dichroism intensity induced at the visible absorption band of proflavine molecules intercalated in either poly(A—T) or poly(G—C).     

Electronic structure, spectra, and magnetic circular dichroism of cyclohexa-, cyclohepta-, and cyclooctapyrrole

Three recently obtained expanded porphyrins represent nice examples of compounds for which the electronic and spectral properties can be predicted from symmetry considerations alone. Perimeter-model-based theoretical analysis of the electronic structure of doubly protonated cyclo[6], cyclo[7], and cyclo[8]pyrrole leads to the anticipation of qualitatively the same electronic absorption and magnetic circular dichroism patterns for all three compounds. These predictions are fully confirmed by experiments, as well as DFT and INDO/S calculations. Due to a characteristic pattern of frontier molecular orbitals, a degenerate HOMO and a strongly split LUMO pair, the three cyclopyrroles show comparable absorption intensity in the Q and Soret regions. Magnetic circular dichroism spectra reveal both A and B Faraday terms, of which the signs and magnitudes are in remarkably good agreement with theoretical expectations. The values of the magnetic moments of the two lowest degenerate excited states have also been obtained.     

具有圆偏振光特性的卟啉衍生物的合成、表征和CD光谱研究

合成了一组不同碳链的胆甾醇酯侧链卟啉配体和金属Zn配合物. 研究了它们的吸收光谱和发射光谱. 将这些卟啉配体以一定浓度掺杂在聚甲基丙烯酸甲酯(PMMA)中制成固体薄膜, 发现由于在卟啉环上引入了手性的胆甾醇酯侧链, 卟啉化合物在soret带和Q带均有较强的CD吸收, 这种现象可能是卟啉环上的四个手性胆甾醇酯侧链与四苯基卟啉环发生偶合作用. 进一步还发现这些卟啉化合物的圆偏振吸收性质与在PMMA中的浓度有关.