Application of time-resolved in-situ X-ray absorption spectroscopy in solid-state chemistry

Time-resolved X-ray absorption spectroscopy (TR-XAS) possesses excellent capabilities to reveal quantitative phase composition and average valence together with the evolution of the local structure of a system under dynamic reaction conditions. The work discussed here focused on time-resolved in-situ XAS investigations aiming, first, at understanding structural evolution under dynamic conditions and, second, at revealing properties of the system studied not available from investigations under stationary conditions. Hence, not only was the local structure of a material studied under reaction conditions, but characteristic properties of the reaction, such as reaction intermediates or the kinetics of the reaction, were also elucidated. The solid–gas reactions presented here clearly demonstrate the potential of TR-XAS investigations to extend the suitability of XAS for in-situ studies in solid-state chemistry to investigations under dynamic conditions.     

Redox chemistry of tantalum clusters on silica characterized by X-ray absorption spectroscopy

SiO(2)-supported clusters of tantalum were synthesized from adsorbed Ta(CH(2)Ph)(5) by treatment in H(2) at 523 K. The surface species were characterized by X-ray absorption spectroscopy (extended X-ray absorption fine structure (EXAFS) spectroscopy and X-ray absorption near edge spectroscopy (XANES)) and ultraviolet-visible spectroscopy. The EXAFS data show that SiO(2)-supported tantalum clusters were characterized by a Ta-Ta coordination number of approximately 2, consistent with the presence of tritantalum clusters, on average. When these were reduced in H(2) and reoxidized in O(2), the cluster nuclearity remained essentially unchanged, although reduction and oxidation occurred, respectively, as shown by XANES and UV-vis spectra; in the reoxidation, the tantalum oxidation state change was approximately two electronic charges per tritantalum cluster. The data demonstrate an analogy between the chemistry of group 5 metals on the SiO(2) support and their chemistry in solution, as determined by the group of Cotton.     

In-situ X-ray absorption spectroscopy study of Pt and Ru chemistry during methanol electrooxidation

Methanol electrooxidation in a 0.5 M sulfuric acid electrolyte containing 1.0 M CH3OH was studied on 30% Pt/carbon and 30% PtRu/carbon (Pt/Ru = 1:1) catalysts using X-ray absorption spectroscopy (XAS). Absorption by Pt and Ru was measured at constant photon energy in the near edge region during linear potential sweeps of 10-50 mV/s between 0.01 and 1.36 V vs rhe. The absorption results were used to follow Pt and Ru oxidation and reduction under transient conditions as well as to monitor Ru dissolution. Both catalysts exhibited higher activity for methanol oxidation at high potential following multiple potential cycles. Correlation of XAS data with the potential sweeps indicates that Pt catalysts lose activity at high potentials due to Pt oxidation. The addition of Ru to Pt accelerates the rate of methanol oxidation at all potentials. Ru is more readily oxidized than Pt, but unlike Pt, its oxidation does not result in a decrease in catalytic activity. PtRu/carbon catalysts underwent significant changes during potential cycling due to Ru loss. Similar current density vs potential results were obtained using the same PtRu/carbon catalyst at the same loading in a membrane electrode assembly half cell with only a Nafion (DuPont) solid electrolyte. The results are interpreted in terms of a bifunctional catalyst mechanism in which Pt surface sites serve to chemisorb and dissociate methanol to protons and carbon monoxide, while Ru surface sites activate water and accelerate the oxidation of the chemisorbed CO intermediate. PtRu/carbon catalysts maintain their activity at very high potentials, which is attributed to the ability of the added Ru to keep Pt present in a reduced state, a necessary requirement for methanol chemisorption and dissociation.     

Characterization of hexavalent chromium interaction with Sargassum by X-ray absorption fine structure spectroscopy, X-ray photoelectron spectroscopy, and quantum chemistry calculation

Hexavalent chromium represents higher toxicity in aqueous solutions. It can be removed by such low-cost biosorbents as Sargassum sp. In this study, X-ray absorption fine structure spectroscopy, X-ray photoelectron spectroscopy, and quantum chemistry (QC) calculation were used to study the interactions between hexavalent chromium and Sargassum sp. during the biosorption. It was found that most of the adsorbed Cr(VI) ions were reduced to Cr(III) after the biosorption. The electrons for the reduction of Cr(VI) were possibly supplied from the Sargassum biomass, some organic compounds of which were oxidized. Cr(III) ions were coordinated with the oxygen atoms from either carboxyl or hydroxyl functional groups to form an octahedral structural metal complex. The coordination numbers of the formed Cr complex were 4-6, and bond length of Cr-O was 1.98?. QC calculation proved the possible formation of the Cr(III) metal complex, and revealed that carboxyl from biomass could be strongly bound with Cr(III). A three-step removal mechanism of Cr(VI) by Sargassum was proposed.     

X-ray absorption spectroscopy of transition-metal trichalcogenides

The sulfur K and metal L_III absorption spectra of transition-metal trichalcogenides (TMTC's) were measured. The matrix element effect plays an important role in these spectra. It was considered that the structures up to 5 eV above the absorption edge reflect the chalcogen antibonding band, the metal nonbonding d_z² band, and the metal d bands, and that the higher energy structures are derived from the metal s and p bands. The chalcogen antibonding band arises from chalcogen pairing and the metal d, s, and p bands are the mixture bands with chalcogen p orbitals. Evidence that shows that the lowest conduction band of the group IV TMTC's is the chalcogen antibonding band is presented. The overlap of the metal d and metal s bands is promoted by increasing the atomic number of chalcogen atoms.     

X-ray absorption spectroscopy of selenate reductase

The metal sites of selenate reductase from Thauera selenatis have been characterized by Mo, Se, and Fe K-edge X-ray absorption spectroscopy. The Mo site of the oxidized enzyme has 3 to 4 sulfur ligands at 2.33 A from two molybdopterin cofactors, one Mo=O group at 1.68 A and one Mo-O with an intermediate bond length of 1.81 A. The reduced enzyme has a des-oxo active site, again with about four Mo-S ligands (at 2.32 A) and possibly one oxygen ligand at 2.22 A. The enzyme was found to contain Se in a reduced form (probably organic) although the sequence does not indicate the presence of selenocysteine. The Se is coordinated to both a metal (probably Fe) and a lighter scatterer such as carbon.     

Polarized X-ray absorption spectroscopy of single-crystal Mn(V) complexes relevant to the oxygen-evolving complex of photosystem II

High-valent Mn-oxo species have been suggested to have a catalytically important role in the water splitting reaction which occurs in the Photosystem II membrane protein. In this study, five- and six-coordinate mononuclear Mn(V) compounds were investigated by polarized X-ray absorption spectroscopy in order to understand the electronic structure and spectroscopic characteristics of high-valent Mn species. Single crystals of the Mn(V)-nitrido and Mn(V)-oxo compounds were aligned along selected molecular vectors with respect to the X-ray polarization vector using X-ray diffraction. The local electronic structure of the metal site was then studied by measuring the polarization dependence of X-ray absorption near-edge spectroscopy (XANES) pre-edge spectra (1s to 3d transition) and comparing with the results of density functional theory (DFT) calculations. The Mn(V)-nitrido compound, in which the manganese is coordinated in a tetragonally distorted octahedral environment, showed a single dominant pre-edge peak along the MnN axis that can be assigned to a strong 3d(z(2))-4p(z) mixing mechanism. In the square pyramidal Mn(V)-oxo system, on the other hand, an additional peak was observed at 1 eV below the main pre-edge peak. This component was interpreted as a 1s to 3d(xz,yz) transition with 4px,y mixing, due to the displacement of the Mn atom out of the equatorial plane. The XANES results have been correlated to DFT calculations, and the spectra have been simulated using a TD (time-dependent)-DFT approach. The relevance of these results to understanding the mechanism of the photosynthetic water oxidation is discussed.     

X-ray absorption spectroscopy of nanostructured polyanilines

In this paper, X-ray absorption near edge spectroscopy at the nitrogen K edge (N K XANES) data of polyaniline (PANI) and its derivatives were revisited and expanded. The N K XANES spectra of PANI nanocomposites and PANI nanofibers were also investigated. The analysis of N K XANES spectra were done by the deconvolution of bands and the 1s → π* and 1s → σ* transitions were assigned by a correlation with the N K XANES spectra of smaller organic compounds. The “free” forms of PANI were dominated by bands from 397.7 eV to 399.1 eV attributed to imine and radical cation nitrogen atoms, respectively. Nitrogen bonded to phenazine-like rings can also be seen, mainly for PANI prepared at pH higher than 3.0. The spectra of nanocomposites show sharper bands than the “free” polymers as well as new bands at 398.8 eV and 405–406 eV. These new bands were assigned to phenazine-like rings and azo bonds in the structure of the polymers (polyaniline, polybenzidine, and poly(p-phenylediamine)) within the galleries of the montmorillonite clay. PANI nanofibers doped with HCl or HClO₄ show bands related to phenazine-like rings and/or dication segments of PANI, indicating that these segments are important in the formation of PANI nanofibers.     

Innershell absorption spectroscopy of amino acids at all relevant absorption edges

The C, N, and O K-edge near-edge X-ray absorption fine structure spectra of the 22 most common proteinogenic alpha-amino acids in the zwitterionic form collected from solvent-free polycrystalline powder films in the partial electron yield mode are reported. Spectral features common to all amino acids, as well as distinctive fingerprints of specific subgroups of these compounds, are presented and discussed.     

X-ray absorption spectroscopy measurements of liquid water

Recent studies, based on X-ray absorption spectroscopy (XAS) and X-ray Raman scattering (XRS), have shown that the hydrogen bond network in liquid water consists mainly of water molecules with only two strong hydrogen bonds. Since this result is controversial, it is important to demonstrate the reliability of the experimental data, which is the purpose of this paper. Here we compare X-ray absorption spectra of liquid water recorded with five very different techniques sensitive to the local environment of the absorbing molecule. Overall, the spectra obtained with photon detection show a very close similarity and even the observable minor differences can be understood. The comparison demonstrates that XAS and XRS can indeed be applied reliably to study the local bonding of the water molecule and thus to reveal the hydrogen bond situation in bulk water.     

X-ray absorption and X-ray photoelectron spectroscopy of a rhodium colloid

Transition metal colloids are potential precursors of heterogeneous catalysts with application to selective chemical reactions. Sample preparation techniques are described. Experimental details are given of the characterization of these often air-sensitive particles by X-ray photoelectron and X-ray absorption spectroscopy. First results obtained with both techniques for a Rh-colloid show that the metal is mainly present in the zerovalent chemical state. But the spectra indicate further chemical states of Rh which can be assigned to the outermost metal atoms of the colloid interacting with organic ligands or to the educt Rh-halides.     

X-ray absorption and X-ray photoelectron spectroscopy of a rhodium colloid

Transition metal colloids are potential precursors of heterogeneous catalysts with application to selective chemical reactions. Sample preparation techniques are described. Experimental details are given of the characterization of these often air-sensitive particles by X-ray photoelectron and X-ray absorption spectroscopy. First results obtained with both techniques for a Rh-colloid show that the metal is mainly present in the zerovalent chemical state. But the spectra indicate further chemical states of Rh which can be assigned to the outermost metal atoms of the colloid interacting with organic ligands or to the educt Rh-halides.     

Next generation techniques in the high resolution spectroscopy of biologically relevant molecules

Recent advances in the technology of test and measurement equipment driven by the computer and telecommunications industries have made possible the development of a new broadband, Fourier-transform microwave spectrometer that operates on principles similar to FTNMR. This technique uses a high sample-rate arbitrary waveform generator to construct a phase-locked chirped microwave pulse that gives a linear frequency sweep over a wide frequency range in 1 μs. The chirped pulse efficiently polarizes the molecular sample at all frequencies lying within this band. The subsequent free induction decay of this polarization is measured with a high-speed digitizer and then fast Fourier-transformed to yield a broadband, frequency-resolved rotational spectrum, spanning up to 11.5 GHz and containing lines that are as narrow as 100 kHz. This new technique is called chirped-pulse Fourier transform microwave (CP-FTMW) spectroscopy. The technique offers the potential to determine the structural and dynamical properties of very large molecules solely from fully resolved pure rotational spectra. FTMW double resonance techniques employing a low-resolution UV laser facilitate an easy assignment of overlapping spectra produced by different conformers in the sample. Of particular interest are the energy landscapes of conformationally flexible molecules of biological importance, including studies of their interaction with solvent and/or other weakly bound molecules. An example is provided from the authors' work on p-methoxyphenethylamine, a neurotransmitter, and its complexes with water.     

Applications of X-ray powder diffraction in materials chemistry

X-ray powder diffraction is a standard technique in materials chemistry, yet it is often still used in the laboratory as a "one-hit" technique, e.g. for fingerprinting and following the progress of reactions. It is important, however, that the wealth of information available from powder data is not overlooked. While it is only possible here to scratch the surface of possibilities, a range of examples from our research is used to emphasize some of the more accessible techniques and to highlight successes as well as potential problems. The first example is the study of solid solution formation in the oxide systems Ba(3-3x)La(2x)V2O8 and Sr(4-x)Ba(x)Mn3O10 and in the silicate-hydroxyapatite bioceramic, Ca10(PO4)6-x(SiO4)x(OH)2-x. Database mining is also explored, using three phases within the pseudobinary phase diagram Li3SbO4-CuO as examples. All three phases presented different challenges: the structure of Li3SbO4 had been previously reported in higher symmetry than was actually the case, Li3Cu2SbO6 was found to be isostructural with Li2TiO3 but the cation ordering had to be rationalized, and Li3CuSbO5 was believed to be triclinic, presenting challenges in indexing the powder pattern. Quantitative phase analysis is briefly discussed, with the emphasis both on success (determination of amorphous phase content in a novel cadmium arsenate phase) and on possible failure (compositional analysis in bone mineral); the reasons for the problems in the latter are also explored. Finally, the use of an area detector system has been shown to be of value in the study of orientational effects (or lack of them) in non- and partially-ordered biomaterials, including p-HEMA, annulus fibrosis of lumbar discs, and keratin in the horn of cow's hooves.     

Novel visualization studies of lignocellulosic oxidation chemistry by application of C-near edge X-ray absorption fine structure spectroscopy

The research presented herein is the first attempt to probe the chemical nature of lignocellulosic samples by the application of carbon near edge X-ray absorption fine structure spectroscopy (C-NEXAFS). C-NEXAFS is a soft X-ray technique that principally provides selective interrogation of discrete atomic moieties using photoelectrons of variable energies. The X1A beam line of the National Synchrotron Light Source was employed for the specific purpose of observing carboxylic acid moieties that display a signature absorption band centered at 289 eV. This study caps a larger effort to support the mechanistic basis for lignocellulosic fiber chemical degradation induced by the disproportionation of hydrogen peroxiduring fiber bleaching trials. It is shown that fibers that have been bleached with a hydrogen peroxide phase without removal of resident pendant metals (Mn, Cu, Fe) sustain significant macroscopic damage likely via classical Fenton-type radical reactions, as evidenced by a tensile reduction by over 30%. We present X-ray absorption spectra obtained using a scanning transmission X-ray microscope (STXM) at the end of a 2.5 GeV electron synchrotron that provided 1s ^* contrast-enhanced micrographs illustrating a random distribution of acid functionalities that were principally located on fiber surfaces. Control studies using non-bleached fibers demonstrated that very little signature carboxylic acid absorption patterns were present in the fibers, suggesting that these groups are an incriminating fingerprint for macroscopic fiber strength damage during non-radical suppressed bleaching trials.     

Polythiol binding to biologically relevant metal ions

The coordination properties of three peptides with CXXC motif: Ac-GCASCDNCRACKK-NH(2), Ac-GCASCDNCRAAKK-NH(2) and Ac-GCASCDNARAAKK-NH(2) as donors of four, three and two thiol ligands for Ni(2+),Cd(2+), Zn(2+) and Bi(3+) were studied by potentiometric titrations, UV-Vis and CD spectra measurements. Since the stability of the complexes is closely connected with the amount of the metal-bound cysteine sulfurs, competition plots of the complexes of peptides with 2, 3 and 4 cysteines further prove the involvement of all thiols in the metal ion binding. Furthermore, the sulfur-bound zinc complexes appear to be much more stable than the sulfur-bound nickel ones. The stabilities of the studied complexes decreases in the series Bi(3+) ? Cd(2+) > Zn(2+) > Ni(2+).     

X-ray absorption spectroscopy of rare earth intermediate oxides

The M_IV–V and L_III absorption spectra (between 850 and 7500 eV) of intermediate rare earth oxides (Pr₇O₁₂ and Pr₉O₁₆) were studied. These oxides required careful preparation and handling in order to assure their composition.The spectra are characterized by multiplet features that are interpreted as having contributions from both trivalent and tetravalent sites. In the M_IV–V spectra the appearance of distinct multiplet lines and additional weaker features demonstrate clearly the increasing ratio of the tetravalent sites as the oxygen content increases from Pr₇O₁₂ to PrO₂. Similar behavior has been observed for the CeO_x and TbO_x systems. These observations show that in these oxides, the trivalent and tetravalent sites are inequivalent and that the evidence of valence transition is seen in the appearance of the complex spectral features originating from the tetravalent sites.     

Development of a biologically relevant calcium phosphate substrate for sum frequency generation vibrational spectroscopy

A novel biologically relevant composite substrate has been prepared consisting of a calcium phosphate (CaP) layer formed by magnetron sputter-coating from a hydroxyapatite (HA) target onto a gold-coated silicon substrate. The CaP layer is intended to mimic tooth and bone surfaces and allows polymers used in oral care to be deposited in a procedure analogous to that used for dental surfaces. The polymer cetyl dimethicone copolyol (CDC) was deposited onto the CaP surface of the substrate by Langmuir Blodgett deposition, and the structure of the adsorbed layer was investigated by the surface specific technique of sum frequency generation (SFG) vibrational spectroscopy. The gold sublayer provides enhancement of the SFG signal arising from the polymer but plays no part in the adsorption of the polymer. The surface morphology of the substrate was investigated using SEM and AFM. The surface roughness was commensurate with that of the thermally evaporated gold sublayer and uniform over areas of at least 36 mum(2). The chemical composition of the CaP-coated surface was determined by FTIR and TOF-SIMS. It was concluded that the surface is primarily calcium phosphate present as a mixture of amorphous, non-hydroxylated phases rather than solely stoichiometric hydroxyapatite. The SFG spectra from CDC on CaP were closely similar, both in resonance wavenumbers and in their relative intensities, with spectra of thin films of CDC recorded directly on gold. Application of previous analysis of the spectra of CDC on gold therefore enabled interpretation of the polymer orientation and conformation on the CaP substrate.