A HIGHLY REACTIVE HETEROATOM ANALOG OF RETINAL AND ITS INTERACTION WITH BACTERIORHODOPSIN

Abstract
C₁₈ formate ester (5) [2-(6-methyl-8-(2,6,6-trimethyl-1-cyclohexen-1-yl)-3E,5E,7E-octatrienyl formate], a highly reactive analog of retinal, was synthesized and its interaction with bacterioopsin studied. The formate ester, in the absence of purple or bleached membrane, undergoes very rapid reaction (t_l/2= 0.9 min) in neutral buffer but with membrane present it diffuses more rapidly into the membrane where it reacts slowly. Incorporation of 5 in the membrane results in a 38 nm (3900 cm^-1) red shift which remains after reconstitution with retinal. Similar experiments with the corresponding C₁₈ alcohol (4) results in a red shift, but this absorption blue shifts upon reconstitution with retinal. Washing the formate ester-treated membrane with bovine serum albumin or the corresponding lyophilized preparation with hexane, treatments that remove retinal oxime, fails to remove the UV-visible absorption, suggesting that a covalent bond between the C₁₈ moiety and a nucleophilic group of the protein has probably formed.     

INTERACTION OF DIBUCAINEHCl LOCAL ANESTHETICS WITH BACTERIORHODOPSIN IN PURPLE MEMBRANE: A SPECTROSCOPIC STUDY

Several spectroscopic techniques (absorption, emission, transient absorption and differential scanning calorimetry--DSC) were used to investigate the deprotonation of dibucaine.HCl in a hydrophobic environment, and the interaction sites and mechanisms of the local anesthetic dibucaine.HCl on bacteriorhodopsin (bR) in purple membrane. The important results are summarized as follows: (1) the visible absorption features of native (lambda max = 568 nm) and deionized (lambda max = 608 nm) bR are sensitive to the amount of dibucaine.HCl added; (2) the emission spectrum of dibucaine.HCl embedded in the retinal-free mutant bR is similar to that of dibucaine free base in Triton X-100 micellar solutions; (3) the phosphorescence emission of dibucaine at 77 K is completely quenched by bR and the fluorescence quenching rate for the incorporated dibucaine.HCl in bR was determined as kq = 4.09 x 10(13) M-1 s-1; (4) the incorporation of dibucaine.HCl in bR inhibits the slow component rate of formation of M412 and decreases the amount of M412 formation in the photochemical cycle of bR; and (5) the thermal stability of native bR was measured by DSC in the presence and absence of dibucaine and yielded an endothermic transition at 95.9 +/- 1.0 degrees C with 13.6 J/g (3.25 +/- 0.12 cal/g) of enthalpy changes. All observations suggest that the action site of the local anesthetic, dibucaine.HCl, is near or at the chromophore, i.e. the retinal Schiff base of bR. The anesthetic action on bR purple membrane is probably via a specific site binding, but not a conformational mechanism.     

二烷基二硫代磷酸锌的平衡解离及其与低氮分散剂的相互作用

本文用~(31)P-NMP研究了二烷基二硫代磷酸锌(ZDP)在内燃机基础油体系中的作用,发现在低浓度下从ZDP解离出一个含磷核的组份,化学位移为86ppm。表明ZDP在油中的溶解存在着依赖于浓度的化学平衡,通过这种平衡解离在ZDP与分散剂体系中的变化,研究了添加剂间的相互作用机理。     

SUBSTITUTION OF RETINAL BY ANALOGUES IN RETINAL PIGMENTS OF HALOBACTERIUM HALOBIUM. CONTRIBUTION OF BACTERIORHODOPSIN AND HALORHODOPSIN TO PHOTOSENSORY ACTIVITY

Abstract— In Halobacrerium hnlobium. retinal is the chromophore of the light-energy converting pigments bacteriorhodopsin (BR) and halorhodopsin (HR) and of the sensory photosystems. PS 370 and PS 565. In both photosystems as well as in BR and HR. retinal was substituted by retinal analogues. Retinal₂ ( 3,4-dehydro-retinal ) . shifts the main sensitivity maximum of PS 370 and of PS 565 by about 1.5 nm to longer wavelengths. The absorption maxima of BR and HR are both shifted in the same direction, but by 37 nm. 13-Ethylretinal and 13-propylretirnal shift the main sensitivity maximum of each sensory photosystem to shorter wavclengths; the absorption maxima of BR and HR are shifted in the same direction but to a smaller extent. Both sensory photosystems are equally active with retinal and with each of the three analogues as the chromophore. After substitution of retinal by the analogues, the action spectra of PS 565 of the BR-containing strain R₁L₃ show a secondary bensitivity peak in addition to the main peak. This secondary peak matches the absorption maximum of the corresponding BR. In the action spectra of the BR-deficient strainET–15 this secondary peak is missing. Action spectra of PS 565 of the BR-deficient strainL–33, which synthesizes increased amounts of HR. with all retinals show a secondary peak which matches the absorption maximum of the corresponding HR.
The results show that the analogues can substitute retinal in both sensory pigments as well as in BR and HR. Moreover, the data support the previous assumption that both BRand HR, although not required for photosensory activity can contribute to photosensing through PS 565.     

水溶性星型卟啉高分子的合成表征及其与牛血清白蛋白的相互作用

利用琥珀酸酐修饰四(p-氨基苯基)卟啉,再与聚乙二醇单甲醚酯化,制备了亲水性卟啉高分子,用IR、UV-Vis、1H NMR、元素分析等方法对其结构进行了表征.利用紫外可见光谱研究了卟啉高分子与牛血清白蛋白(BSA)之间的相互作用.实验结果显示,卟啉高分子与BSA之间不仅存在卟啉与BSA之间的相互作用,而且存在高分子侧臂与BSA之间体积排斥作用,二者综合结果导致卟啉的可见吸收峰表现出不同于小分子卟啉的特征,最大吸收峰位置没有改变,但是吸收强度表现为增色作用.锌离子与卟啉环络合后,增色作用明显,说明络离子可通过配位键增强对BSA的结合.     

AZIDOTETRAFLUOROPHENYL RETINAL ANALOGUE: SYNTHESIS AND BACTERIORHODOPSIN PIGMENT FORMATION

Abstract —The retinal derivative, all-truns-9–(4-azido-2,3,5,6-tetrafluorophenyl)-3,7-dimethyl-2,4,6,8-nonatetraenal, was synthesized by two routes as a potential photoactivatable cross-linking agent for studies in bacteriorhodopsin (BR) of the chromophore interaction with its apoprotein. The retinal analogue formed a stable, moderately functional BR pigment confirming that the ring cavity of the retinal binding site has a significant tolerance for derivatization on that portion of the molecule. Attempts to cross-link the azido chromophore to the protein by photoactivation were unsuccessful. The electron delocalization effect of the conjugated polyene side chain of the retinal appears to interfere with the formation or reactivity of the nitrene intermediate to the extent that photoactivated cross-linking is not achieved. These results demonstrate a limitation to the use of fluorinated aryl azides as photoaffinity reagents.     

MICELLIZATION STUDIES OF DODECYL BENZENESULFONIC ACID AND ITS INTERACTION WITH POLYVINYLPYRROLIDONE

Dodecyl benzenesulfonic acid (DBSA) surfactant was used in the present study to find the effect of concentration on its electrical conductance in solution from 293-323K above and below the critical micelle concentration (CMC). The micellization parameters i.e. degree of counter ion binding (β), aggregation number (n) and number of counter ion micelle(m) were measured. The interaction of DBSA with polyvinylpyrrolidone (PVP) was also studied at 293K throughconductance and surface tension measure ments. A number of important parameters i.e. critical aggregation concentration (CAC), Gibb‘s free energy (△G) and binding ratio (R) were determined and the effect of NaCl on the CAC and polymer saturation point (PSP) was also investigated.     

REACTION OF RETINOL AND RETINAL WITH SINGLET OXYGEN

Abstract— The rate constants for the reactions of all- trans retinol and retinal with singlet oxygen were measured in a variety of solvents of different polarities. The rate constants increased with increasing solvent dielectric constant, which suggests that a charge transfer mechanism plays a part in the reaction. Further, the rate constant of reaction of singlet oxygen with retinal is greater than that with retinol. Since retinal has a lower ionization potential than retinol, these relative rates also support the hypothesis of charge transfer involvement in the reaction.     

邻羧基苯基重氮氨基偶偶氮苯与镉的高灵敏显色反应的研究及其应用

邻羧基苯基重氮氨基偶氮苯(简写作O—CDAA)是我们最近研制的一种新显色剂,其氮结构式在碱性条件下,当OP乳化剂存在时,该试剂与镉形成红色配合物,在520nm波长处有最大吸光度,摩尔吸光系数可达1.88×10~5升·摩尔~(-1)·厘米~(-1),镉量在0～10μg/25ml范围内符合比耳定律。本试剂结合萃取分离,用于废水(电镀废水)中微量镉的测定,获得了满意的结果。     

STRUCTURE OF BACTERIORHODOPSIN and in situ ISOMERIZATION OF RETINAL: A MOLECULAR DYNAMICS STUDY*

Abstract– Henderson's model of the structure of bacteriorhodopsin has been completed by adding the missing loop regions and by subsequent energy minimization and equilibration (for about 100 ps) at 300 K. Analysis of the structure during a later 20 ps molecular dynamics run showed no significant deviations from the Henderson model. In situ isomerization reactions of the retinal chromophore in bacteriorhodopsin have then been simulated to investigate the chromophore protein interaction for the three isomerization reactions: (i) all-trans→ 13-cis; (ii)all-trans→ 13,14-dicis; and (iii) all-trans→ 13,15-dicis. We find that reaction (iii) which accompanies dark-adaptation of bacteriorhodopsin can proceed in the binding site without any sterical hinderance and involves negligible motions of the covalently bound Lys-216 and other side groups. Reaction (ii) exhibits a somewhat larger but still small energy barrier and involves little rearrangement of Lys-216 and the protein backbone. Reaction (i) experiences a sterical impediment amounting to more than 10 kT at physiological temperatures and also induces significant structural changes at the binding site. Our simulations also reveal that reaction (ii) as a photo-isomerization process can be completed within about 400 fs, whereas reaction (i) requires longer times for completion. Reaction (i) is also accompanied by a co-rotation of the 14–15 bond by 150° (even when a torsional barrier of 20 kcal/mol is imposed to impede rotation of the 14–15 bond) such that photoreactions (i) and (ii), in effect, lead to very similar final geometries. Isomerization (ii) can readily explain the pump mechanism of bacteriorhodopsin: the sequential, thermal back-reaction 13,14-dicis→ 13-cisall-trans can be acid-base catalyzed, i.e., coupled to deprotonation and reprotonation of retinal's Schiff base nitrogen. The orientation of retinal is such that Asp-85 can act as the acceptor and Asp-96 as the (indirect) donor. The thermal back-reaction 13,14-dicis→ all-trans can be coupled to vectorial Cl^? ion transport as well.     

EFFECT OF MELITTIN ON PHOTOCYCLE AND PHOTOPOTENTIAL OF PURPLE MEMBRANE: SITES OF INTERACTION BETWEEN BACTERIORHODOPSIN AND MELITTIN

Abstract— Purple membrane (PM) suspension and artificial bilayer lipid membranes (BLM) containing PM sheets were treated with melittin. Both the decaying of the photocycle intermediate M412 and proton translocation were inhibited by melittin: The yields and rate of the slow-decaying component of M412 (M412s) together with the proton release and its uptake rate were significantly decreased, but the rate of the fast-decaying component of M412 (M4120 had only slight changes. Relatively high concentrations of melittin could cause aggregation in PM suspensions. Addition of melittin to a BLM solution increased the continuous photopotential signal but decreased the transient signal. We suggest that there might exist strong interactions between melittin and bacteriorhodopsin in addition to the melittin–lipid action. On the other hand, the results also indicate that proton translocation was more likely to be coupled with M412s and both were more sensitive to the changes caused by the melittin–PM interaction than was M412f.     

INTERACTIONS OF BOTH MELITTIN AND ITS SITE-SPECIFIC MUTANTS WITH BACTERIORHODOPSIN OF Halobacterium halobium: SITES OF ELECI'ROSTATIC INTERACI'ION ON MELITI'IN

Abstract Melittin and its site-specific mutants differentially delay the slow-decaying component of the photocycle intermediate M₄₁₂ of bacteriorhodopsin in the purple membrane and the acetylated purple membrane whose several lysine residues are modified. This effect is attributed to the interaction of the total positive charges of melittin or its mutants with the total negative charges of bacteriorhodopsin. The effects of melittin and its mutants on the Triton X-100–solubilized bacteriorhodopsin monomers are somewhat complicated but are associated with their charges. These results show that there is electrostatic interaction between bacteriorhodopsin and melittin and that both N-and C-termini of melittin function as sites of the interaction, with Arg 22 and Arg 24 making a prominent contribution to the effective surface charge of melittin. Melittin, at certain concentrations, partially restores the decreased photoactivity of the bacteriorhodopsin monomers trapped in the Triton-lipid-protein mixed micelles, which suggests that melittin may compete with Triton X-100 for the binding sites on the bacteriorhodopsin monomers. Other kinds of interactions between bacteriorhodopsin and melittin are also indicated. The possible states of melittin in membranes are discussed.     

THEORY OF THE OPTICAL ABSORPTION OF LIGHT-ADAPTED BACTERIORHODOPSIN AND ITS ACIDIFIED FORMS

Abstract— We assume a model for bacteriorhodopsin chromophore such that the protonated retinal Schiff-base (PRSB) interacts with two anions in the case of light-adapted bacteriorhodopsin (bR^L), while it does with one anion in the case of the acidified form of bacteriorhodopsin (bR^acid₆₀₀). On the basis of this model, the π-electronic states of all- trans -PRSB are calculated according to our LCAO-ASMO-SCF-CI method, the anions being approximated by negative point-charges in the plane of PRSB π-system. A possible distribution of the negative point-charges around PRSB is proposed for the chromophores of bR^L, bR^acid₆₀₀, and the two irradiated forms of bR^acid₆₀₀ (the one at 3°C containing 9- cis -PRSB, and the other at — 72°C all- trans -PRSB). It is shown that the wavelength λ_max of absorption maximum observed for each form of bacteriorhodopsin can be explained reasonably well by the suggested charge distribution. Furthermore, a model for the structure of the active site of bR^L is proposed, considering that two COO⁻ groups form the anions that interact with PRSB. The calculated optical absorption of all- trans -PRSB at such a site is shown to be consistent with the observed absorption spectrum of bR^L.     

PROPERTIES OF THE RETINAL BINDING SITE IN BACTERIORHODOPSIN. USE OF RETINOL AND RETINYL MOIETIES AS FLUORESCENT PROBES

Abstract— The fluorescence spectra of various reduced bacteriorhodopsin chromophore species indicate energy transfer from aromatic amino acid side chains of the protein to the retinyl moiety. Binding studies with retinol reveal that energy transfer occurs only when the retinyl moiety is bound in the chromophoric site of the protein. Retroretinol is a fluorescent probe for the binding site.     

PHOTOCHEMICAL INTERACTION OF FUROCOUMARINS WITH BROMODEOXYURIDINE AND POLYDEOXY-NUCLEOTIDES CONTAINING BROMODEOXYURIDINE: ITS BIOLOGICAL IMPLICATIONS

Abstract— The photoreaction of 5-bromodeoxyuridine (BUdR) exposed to 360 nm light in the presence of the furocoumarins, 4,5',8-trimethylpsoralen (TMP) and 8-methoxypsoralen (&MOP), was studied and compared to those of thymidine. BUdR reacted with furocoumarins, producing cyclobutane-containing adducts, as does thymidine. Furocoumarins reacted also with BUdR-containing polymer, poly(dA-BUdR) in the double stranded form, at a rate similar to that of thymidine-containing polymer, poly(dA-dT). Polyamines, which slow the photoreactions of TMP with DNA, had no effect on its binding to the two former polynucleotides. It is suggested that because of the similar photoreactions of BUdR and thymidine with furocoumarins, this combination could be used to elucidate the mechanism by which BUdR sensitizes biological systems. In Escherichia coli some sensitization by BUdR of TMP plus 360 nm light killing was observed. It is therefore concluded that at least part of the sensitization of bacteria by BUdR to UV and ionizing radiation is caused by interference with the repair processes. Since no such sensitization was observed in a uvr B mutant, BUdR apparently impairs the efficiency of the excision resynthesis pathway of repair.     

EFFECTS OF METAL CATIONS, RETINAL, AND THE PHOTOCYCLE ON THE TRYPTOPHAN EMISSION IN BACTERIORHODOPSIN

Abstract— The picosecond fluorescence kinetics of tryptophan residues in bacteriorhodopsin and some perturbed analogs are measured to study the different tryptophan environments and their changes upon metal cation removal, retinal removal, and M₄₁₂ trapping. In bacteriorhodopsin, the emission shows four decay components designated Or, C2r, C3r, and C4r in order of increasing lifetimes. The emission wavelength of C3r and C4r is near that found in aqueous solution, while that of C1r is the shortest. The removal of retinal triples the total emission intensity and reduces the number of components to two, suggesting that the observed variation of the lifetimes in bacteriorhodopsin results from the variation of the energy transfer efficiency between different tryptophans and retinal. We conclude that the Or and C2r emission is from the closest tryptophans to the retinal. The quenching of the C3r emission by all metal cations, including those that cannot act as energy acceptors, e.g. Ca²⁺, is attributed to protein conformation changes caused by metal cation binding which leads to a stronger energy transfer coupling between tryptophans and retinal. The additional quenching of the C2r emission in Eu³⁺bound bacterioopsin is proposed to result from direct energy transfer between tryptophans and Eu³⁺.     

LASER PHOTOLYSIS OF RETINAL AND ITS PROTONATED AND UNPROTONATED n-BUTYLAMINE SCHIFF BASE

Abstract —The pulsed ruby laser (347 nm) flash photolysis technique has been used to measure the triplet-triplet absorption spectra and triplet lifetimes of trans -retinal, N-frans -retinylidene- n -butylamine (NRBA), and protonated NRBA (NRBAH⁺) at room temperature. In methylcyclohexane solution, the triplet lifetimes are in the range 10–20 μs and decrease in the order NRBAH⁺ > NRBA > trans -retinal. Intersy stem-crossing efficiencies (φ_ISC) were determined by a comparison technique using anthracene and 1,2-benzanthracene as reference compounds. For trans -retinal, φ_ISC is 0–50 pM 0–05 in methylcyclohexane and 0–08 in methanol, which confirms that earlier values of 0–11 and 0–017 in these solvents are in error. For NRBA and NRBAH⁺ in methylcyclohexane, Φ_ISC values are 0008 and < 0–001, respectively. Evidence is presented for a significant solvent effect in the isomerization of retinal via the triplet state, and that cis φ trans isomerization occurs from the triplet state of NRBAH⁺. The relation between the intersystem-crossing properties of model compounds and the photochemistry of rhodopsin is discussed.     

THE POSSIBLE MECHANISM OF BINDING INTERACTION OF INSULIN MOLECULE WITH ITS RECEPTOR

Detailed structural comparisons and investigation of DPI, 2Zn insulin and some other derivatives of insulin were performed by the least-squares superimposition technique and the graphics technique. It is pointed out in this paper that the binding interaction with the receptor molecule should take place mainly on an amphipathic surface of the insulin molecule. In the middle, there is a hydrophobic surface with an area of about 150 consisting of many hydrophobic residues; while the polar or charged groups distributing around the hydro. phobic surface construct a hydrophilic zone. The hydrophobic surface is usually covered by the extended B-chain C-terminal peptides with great mobility and protected from the solvent molecules. The angle between the amphipathic surface and the surface of dimerization is about 20 degrees. The results from the detailed structural comparison between A1-(L-Trp) insulin and A1-(D-Trp) insulin have provided a very good explanation to their great difference in biological activity,     

INTERACTION OF ACRIDINE DRUGS WITH DNA AND NUCLEOTIDES

Abstract— At high phosphate-to-drug ratios acridine drugs intercalate between hydrogen bonded DNA base pairs causing significant changes in the physico-chemical properties of DNA. The determination of the nature of the strong (or primary) interaction between acridine drugs and DNA is of great importance for elucidating the mode of the biological action of the drugs. Nanosecond measurements have revealed a fast depolarization of the fluorescence of proflavine, one of the most extensively studied acridines, bound to DNA. The electronic structure of the complex, however, is not substantially altered during the lifetime of the excited singlet electronic state of the drug. Guanine has been shown to be responsible for the quenching of the proflavine fluorescence upon binding to DNA. A temperature-jump relaxation study has demonstrated a rather external complexation of this drug with the G-C base pairs; this complex, whose formation occurs in the strong binding region, is distinct from the weak electrostatic complex. The findings that the binding ability of a series of acridines correlates with their basicity and that the drug–binding behavior of methylated DNA is significantly different from that of DNA suggested that specific forces may be also involved in the drug–DNA binding in addition to hydrophobic forces. Recent experiments employing molecular complexes of acridines with nucleotides as model systems have provided strong support for the specificity of the drug-DNA interaction. Hydrogen bonding between the drug and reactive groups of the DNA bases that do not contribute directly to the stability of the helix may be involved in that interaction. The stoichiometry of the proflavine-guanosine 5′-phosphate complex is 1:1. Its association constant increases from 310 M^-1 when proflavine is in its ground electronic state, to 1550 M^-1, when proflavine is in its first excited singlet state. Thus, light absorbed by the drug alters its reactivity which, in turn, results in an appreciable increase in its ability to bind to the nucleotide. In view of the proposed importance of the drug–base interaction in explaining the mutagenic properties of acridine drugs and, in particular, of the proposed involvement of the G-C base pairs, this finding emphasizes the possible importance of drug photoexcitation in acridine mutagenesis; it also contributes to the elucidation of photodynamic action. X-ray diffraction studies have recently provided very interesting demonstrations of strong binding of 9-aminoacridine and of the phenanthridine drug ethidium bromide to adenine-uracil base pairs in the crystalline phase. The ability of photoexcited acridine drugs to inactivate viruses has been recently used for therapeutic purposes. The carcinogenic risk involved, however, is still under investigation.