A HIGHLY REACTIVE HETEROATOM ANALOG OF RETINAL AND ITS INTERACTION WITH BACTERIORHODOPSIN

Abstract
C₁₈ formate ester (5) [2-(6-methyl-8-(2,6,6-trimethyl-1-cyclohexen-1-yl)-3E,5E,7E-octatrienyl formate], a highly reactive analog of retinal, was synthesized and its interaction with bacterioopsin studied. The formate ester, in the absence of purple or bleached membrane, undergoes very rapid reaction (t_l/2= 0.9 min) in neutral buffer but with membrane present it diffuses more rapidly into the membrane where it reacts slowly. Incorporation of 5 in the membrane results in a 38 nm (3900 cm^-1) red shift which remains after reconstitution with retinal. Similar experiments with the corresponding C₁₈ alcohol (4) results in a red shift, but this absorption blue shifts upon reconstitution with retinal. Washing the formate ester-treated membrane with bovine serum albumin or the corresponding lyophilized preparation with hexane, treatments that remove retinal oxime, fails to remove the UV-visible absorption, suggesting that a covalent bond between the C₁₈ moiety and a nucleophilic group of the protein has probably formed.     

PURPLE MEMBRANE ANALOGS SYNTHESIZED FROM C17 ALDEHYDE

Abstract— All- trans , 11- cis and 9- cis isomers of the C₁₇ aldehyde analogs of retinal bound with purple membrane apoprotein, probably through a Schiff base linkage at the normal retinal binding site. The complex formed from C₁₇ aldehyde and purple membrane apoprotein was slowly decomposed by 10m M hydroxylamine. The C₁₇ aldehyde competitively inhibited the regeneration of purple membrane from all- trans -retinal and purple membrane apoprotein. The differential ability of the different isomers to inhibit the regeneration suggests that purple membrane has a binding site for the side chain of retinal in addition to the Schiff base binding site.     

THE ORIGIN OF THE RED-SHIFTED ABSORPTION MAXIMUM OF THE M412 INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE

The factors that red shift the absorption maximum of the retinal Schiff base chromophore in the M₄₁₂ intermediate of bacteriorhodopsin photocycle relative to absorption in solution were investigated using a series of artificial pigments and studies of model compounds in solution. The artificial pigments derived from retinal analogs that perturb chromophore-protein interactions in the vicinity of the ring moiety indicate that a considerable part of the red shift may originate from interactions in the vicinity of the Schiff base linkage. Studies with model compounds revealed that hydrogen bonding to the Schiff base moiety can significantly red shift the absorption maximum. Furthermore, it was demonstrated that although s-trans ring-chain planarity prevails in the M₄₁₂ intermediate it does not contribute significantly (only ca 750 cm⁻¹) to the opsin shift observed in M₄₁₂. It is suggested that in M₄₁₂, the Schiff base linkage is hydrogen bonded to bound water and/or protein residues inducing a considerable red shift in the absorption maximum of the retinal chromophore.     

PHOTOBIOLOGICAL ACTIVITIES OF 5-A-LKOXYPSORALENS WITH RESPECT TO THE ACTION ON Escherichia coli

Abstract— Near-UV induced activities of a series of 5-a-lkoxypsoralen derivatives (C₁ to C₈) and 5-h-ydroxypsoralen were compared with respect to lethal, mutagenic and prophage inducing effects on E. coli . Although 5-a-lkoxypsoralen derivatives having an alkoxyl chain longer than C₂ were slightly soluble, their saturated solutions containing their insoluble portion showed the significant photolethal effect on E. coli . 5-E-thoxypsoralen was less photoactive in inducing phenotypic reversion of the arginine auxotrophy than 5-m-ethoxypsoralen but it photoinduced prophage lambda from the lysogenic bacteria as well as 5-m-ethoxypsoralen. Photomutagenesis by the derivatives of C₃ to C₈ could not be detected but ca . 10% of the lysogenic bacteria photoinduced prophage in the presence of the derivatives at the maximum induction.     

ABSORPTION SPECTRA OF TCA-DENATURED RHODOPSIN AND OF A SCHIFF BASE COMPOUND OF RETINAL

Abstract— When TCA-denatured rhodopsin was frozen in liquid nitrogen, Λ_max was markedly shifted to longer wavelengths as the concentration of TCA increased. After TCA denaturation, species specific absorption disappeared and the absorption maxima of the squid pigments became identical with those of corresponding pigments of octopus.
In solutions at 5° the bathochromic shift of Λ_max of TCA denatured rhodopsin was observed at higher concentrations of TCA than in the frozen state. Λ_max of N-retinylidene-butylamine (NRB) was also displaced towards longer wavelengths with increasing concentrations of TCA. This bathochromic shift was enhanced by freezing. The mode of the bathochromic shift of Λ_max provoked by TCA was very similar both in the cases of denatured rhodopsin and of NRB. The absorption spectrum of NRB was identical in shape with that of TCA-denatured rhodopsin, as the half-band widths of both materials were about 5500 cm^-1 in the liquid state and 5000 cm^-1 in the frozen state. Λ_max of retinal and NRB were red shifted in polar and polarizable solvents.
It was concluded that the strong acidity and the relatively large polarizability of TCA are responsible for the bathochromic shift of Λ_max of the Schiff base in TCA-denatured rhodopsin.     

PREPARATION AND PHOTOPHYSICAL STUDIES OF PORPHYRIN-C60 DYADS

Abstract Porphyrin-C₆₀ dyads in which the two chromophores are linked by a bicyclic bridge have been synthesized using the Diels-Alder reaction. The porphyin singlet lifetimes of both the zinc (Pz_n-C₆₀) and free base (P-C₆₀) dyads, determined by time-resolved fluorescence measurements, are ≦17 ps in toluene. This substantial quenching is due to singlet-singlet energy transfer to C₆₀ The lifetime of Pzn-¹C₆₀ is -5 ps in toluene, whereas the singlet lifetime of an appropriate C₆₀ model compound is 1.2 ns. This quenching is attributed to electron transfer to yield P_zn^bull;+-C₆₀^bull;-. In toluene, P-¹C₆₀ is unquenched; the lack of electron transfer is due to unfavorable thermodynamics. In this solvent, a transient state with an absorption maximum at 700 ran and a lifetime of-10 μs was detected using transient absorption methods. This state was quenched by oxygen, and is assigned to the C₆₀ triplet. In the more polar benzonitrile, P-¹C₆₀ underoes photoinduced electron transfer to give P^•+-C₆₀^bull;-. The electron transfer rate constant is −2 × 10¹¹ s⁻¹.     

MECHANISMS OF PHOTOELIMINATION REACTIONS OF ALKYL BENZOHYDROXAMATES

Abstract— Photolysis at 254 nm of alkyl benzohydroxamates [C, H, CONHOR: R = CH₃ H₂CH₃ CH(CH₃)₂, CH₂C₆H₅ CH(CH₃)C₂H₅ CH(CH₃)- n -C₆H₁₃] in acetonitrile or hydrocarbon solvents gives benzamide. These reactions can be sensitized by benzophenone (at ca. 350 nm) and are quenched by cis-piperylene. Racemization occurred when 2-octyl (+)-benzohydroxamate was irradiated in cyclohexane. These results are consistent with a mechanism involving a triplet biradical. Photolysis of phenyl benzohydroxamate [C₆H₅CONHOC₆H₅] and benzyl N -methylbenzohydroxamate [C₆H₅CON-(CH₃)OCH₂Q₆H₅] cannot be quenched with ris-piperylene and appear to be singlet reactions.     

A Resonance Raman Study Of the C=C Stretch Modes in Bovine and Octopus Visual Pigments with Isotopically Labeled Retinal Chromophores

Abstract— Previous resonance Raman spectroscopic studies of bovine and octopus rhodopsin and bathorhodopsin in the C–C stretch fingerprint region have shown drastically different spectral patterns, which suggest different chromophore-protein interactions. We have extended our resonance Raman studies of bovine and octopus pigments to the C=C stretch region in order to reveal a more detailed picture about the difference in retinal-protein interactions between these two pigments. The C=C stretch motions of the protonated retinal Schiff base are strongly coupled to form highly delocalized ethylenic modes located in the 1500 to 1650 cm⁻¹ spectral region. In order to decouple these vibrations, a series of 11,12-D₂-labeled retinals, with additional 13C labeling at C₈, C₁₀, C₁₁ and C₁₄, respectively, are used to determine the difference of specific C=C stretch modes between bovine and octopus pigments. Our results show that the C₉=C₁₀ and C₁₃=C₁₄ stretch mode are about 20 cm⁻¹ lower in the Raman spectrum of octopus bathorhodopsin than in bovine bathorhodopsin, while the other C=C stretch modes in these two bathorhodopsins are similar. In contrast, only the C₉=C₁₀ stretch mode in octopus rhodopsin is about 10 cm⁻¹ lower than in bovine rhodopsin, while other C=C stretches are similar.     

INTRAMOLECULAR EXCIPLEX FORMATION IN Nα-ACETYL-1-PYRENYLALANYL-1-METHYLTRYPTOPHAN METHYLESTER

Abstract— The synthesis, absorption and emission properties of erythro (e) and threo (t) Na-acetyl-1-pyrenylalanyl-1-methyltryptophan methylester (APTE) are reported. From the dependency of the exciplex emission maximum on the solvent polarity, the exciplex dipole moment of erythro and threo APTE were calculated. The evolution of the ratio of the quantum yield of exciplex emission and the quantum yield of emission from the locally excited state is correlated with solvent polarity and with the tendency of the solvent to interact with the peptide chain through hydrogen bonding. It is shown that solvents, inert towards the peptide function, shift the equilibrium between the two ground state conformations towards C₇, in which an exciplex geometry can be reached. Hydrogen accepting solvents shift the conformational equilibrium towards C₅, which cannot form an exciplex directly within the lifetime of excited pyrene.     

TWENTY-TWO CARBON HOMOLOGUE OF 11-CIS RETINAL. PHOTOPHYSICAL AND PHOTOCHEMICAL PROPERTIES

Abstract— Results concerning absorption-emission spectra and fluorescence quantum yields at 77 and 298K. triplet absorption spectra, and quantum yields of intersystem crossing and photoisomerization at 298 K, are presented for 11- cis β-apo-14'-carotenal (C₂₂-Ald), the immediate higher homologue of 11- cis retinal. The absorption spectra are characterized by two band-systems with maxima at 390–400 and 270–280 nm, respectively. Upon cooling from 298 to 77 K, the intensities of these two band-systems undergo changes in opposite directions indicating 12-s- cis: 12- s-trans conformational changes. No intermediate band-system analogous to the one located at 270–310 nm in cis retinals is observed for 11- cis C₂₂-Ald. In nonpolar hydrocarbon solvents (e. g. cyclohexane) at room temperature, quantum yields of fluorescence (0.01), intersystem crossing (0.6) and photoisomerization (0.4) are all quite pronounced. The photophysical and photochemical properties of 11- cis C₂₂-Ald are discussed in the light of similarities and dissimilarities with those of all- trans C₂₂-Ald and 11- cis retinal under comparable conditions.     

EFFECT OF TRANSMEMBRANE POTENTIAL ON CHARGE PHOTOSEPARATION IN LIPOSOMES

Abstract— An unexpected transmembrane potential effect on the recombination rate of the pheophytin or bacteriopheophytin anion-radicals (dissolved in membrane) and ascorbic ion-radicals (dissolved in aqueous interior) has been established in liposomes. The influence of transmembrane potential on the recombination rate of Ru³⁺ (dissolved in inner volume) and (C₁₈H₃₇)V⁺ or (C₁₄H₂₉)V⁺ (dissolved in membrane) was observed. The potential was created by a potassium concentration gradient between inner and outer volumes of liposomes in the presence of valinomycin. The effect of the potential was considered on the bases of: (1) it was determined by the diffusional drift of the hydrophobic radicals in a radial direction in the membrane, according to the direction of the electric field; (2) the electric field changed the rate constant of the electron transfer, owing to the effects on the free energy and electronic coupling. Our results show the first explanation to be preferable.     

POWER- AND TIME-RESOLVED RESONANCE RAMAN STUDIES AND CONFORMATIONAL CHANGES IN BACTERIORHODOPSIN

Abstract— By comparing the resonance Raman spectra of the retinal of the intermediates of bacteriorho-dopsin (obtained by using fixed flow with residence of time of 10 ps. variable laser power and frequency as well as computer subtraction techniques) with those of model compounds and with each other, the following possible conclusions can be obtained: (1) There exists stronger interaction between the retinal and the opsin in bacteriorhodopsin than that present in rhodopsin. (2) Conformational changes seem to take place during the dark light adaptation process as well as during the photosynthetic cycle. (3) The appearance of the spectrum of the retinal in the fingerprint region for the bL₅₅₀ and bM₄₁₂ intermediates is similar despite large shifts in their optical absorption maxima. This might argue against the theory that proposes ground state retinal conformational changes to explain the observed red shift in the optical spectra of retinal upon combining with the opsin. (4) Contrary to bM ₄₁₂ , the bL₅₅₀ species seems to be protonated. The fact that loss of proton does not seem to change the retinal conformation greatly might suggest that the protein and its ionic environment might carry the larger share of the load in the deprotonation process.     

STRUCTURE AND CONFORMATION OF PHOTOSYNTHETIC PIGMENTS AND RELATED COMPOUNDS 7. ON THE CONFORMATION OF THE METHYL ESTER OF (20-METHYLPHYTOCHLORINATO)NICKEL(II)-A BAaERIOCHLOROPHYLL c MODEL COMPOUND

Abstract The crystal and molecular structure of the title compound 4 have been determined by single crystal X-ray crystallography. The structure shows the typical S,-ruffled conformation observed for Ni(II) tetrapyrroles. Compared to the structure of the methyl ester of (13²-demethoxycarbonyl-pheophorbidato a)nickel(II), 4 shows a smaller C_a-C_m-C_m angle and a higher degree of conformational distortion at the methyl-substituted C20 position. This local distortion of the macrocycle might account for the bathochromic shifted absorption spectra of the bacteriochlorophylls c compared to the d-series. Crystal data: C₃₅H₃₈N₄NiO₃; tetragonal, P4₃2₁2, a = 15.335(7) Å, c = 25.11(2) Å, V = 5904, Z = 8, λ(Mo Kα) = 0.71069 Å, μ= 0.701 mm⁻¹, P(000) = 2624, 130 K, R = 0.058 for 5700 reflections with F > 4.0σ(F).     

TRIPLET STATES OF ISOMERS OF THE C15-ALDEHYDE AND THE C18-KETONE: LOWER HOMOLOGUES OF RETINAL

Abstract— Triplet extinction coefficients, singlettriplet intersystem crossing yields and triplet state kinetic data of all- trans , 7- cis , 9- cis , 7, 9- dicis isomers of the C₁₅-aldehyde and the C₁₈-ketone. lower homologues of retinal, have been determined in hexane using the methods of laser flash photolysis and pulse radiolysis.     

Solution behaviour of a formate capped surfactant—the oxidation product of an alcohol ethoxylate

The solution behaviour has been investigated for an alcohol ethoxylate terminated with a formic acid ester. This compound has previously been reported to be an important degradation product in the auto-oxidation of alcohol ethoxylates. In this work we have investigated the solution behaviour of the formic acid ester surfactant C₁₂H₂₅(OCH₂CH₂)₄OCHO (C12E4---OCHO). The pure formate was found to be sparsely soluble in water with no clear point at 0.1%. The critical micelle concentration was found to be 129 μM at 35°C, compared to 50 μM for the parent surfactant C₁₂H₂₅(OCH₂CH₂)₅OH (C12E5). To mimic the behaviour of the oxidised surfactant, the formate was mixed in different ratios with C12E5 and the cloud point, surface tension and critical micelle concentration (cmc) of these mixtures were studied. The gradual increase of formate was found to shift the cloud point and isotropic regions to lower temperatures. The cmc of the mixture was found to be lower than for the pure surfactant. The favourable interaction was analysed according to the non-ideal model by Rubingh and the interaction parameter, β, was determined to be −4±0.53, which is unusually large for a mixture of two non-ionic surfactants. These results indicate that the reduction of cloud point observed during oxidation of non-ionic surfactants can in part be attributed to the formation of formate esters.     

PEPTIDE MODELS FOR THE BACTERIORHODOPSIN CHROMOPHORE. RETINYLIDENE-LYSINE SYSTEMS CONTAINING ASPARTIC ACID AND SERINE RESIDUES

Abstract— The retinylidene Schiff base derivative of seven lysine containing peptides have been prepared in order to investigate solvent and neighboring group effects, on the absorption maximum of the protonated Schiff base chromophore. The peptides studied are Boc-Aib-Lys-Aib-OMe ( 1 ), Boc-Ala-Aib-Lys-OMe ( 2 ), Boc-Ala-Aib-Lys-Aib-OMe ( 3 ), Boc-Aib-Asp-Aib-Aib-Lys-Aib-OMe ( 4 ), Boc-Aib-Asp-Aib-Ala-Aib-Lys-Aib-OMe ( 5 ), Boc-Lys-Val-Gly-Phe-OMe ( 6 ) and Boc-Ser-Ala-Lys-Val-Gly-Phe-OMe ( 7 ). In all cases protonation shifts the absorption maxima to the red by 3150–8450 cm^-1. For peptides 1–3 the protonation shifts are significantly larger in nonhydrogen bonding solvents like CHCl₃ or CH₂Cl₂ as compared to hydrogen bonding solvents like CH₃OH. The presence of a proximal Asp residue in 4 and 5 results in pronounced blue shift of the absorption maximum of the protonated Schiff base in CHCl₃, relative to peptides lacking this residue. Peptides 6 and 7 represent small segments of the bacteriorhodopsin sequence in the vicinity of Lys-216. The presence of Ser reduces the magnitude of the protonation shift.     

Photocycloaddition Reactions of Pyrazinopsoralen with Simple Olefins

Direct photolyses of pyrazinopsoralen (PzPs) with excess olefins such as dimethyl fumarate (DMFu), dimethyl maleate (DMMa) and dimethyl ethylidenemalonate (DMEM) gave C₄-photocycloadducts. The photoproducts were determined to be 1:1 C₄-cycloadducts formed through the addition of 4',5'-furan double bond of the excited P_zP_s to the olefins. The fluorescence of P_zP_s was quenched by olefins with rate constants on the order of 10₉–10₁₀ M -¹/s. The appearance of the long-lived fluorescence component implies a singlet exciplex mechanism for the photocycloaddition reaction of PzPs with excess olefins.     

Fluorescent Dimers of Merocyanine 540 (MC540) in the Gel Phase of Phosphatidylcholine Liposomes

Abstract— Fluorescence emission from merocyanine 540 (MC540) dimers was observed in dipalmitoylphosphatidylcholine (DPPC) vesicles. This unusual behavior was observed only for vesicles in the gel-phase state. No dimer fluorescence was observed either in monopalmitoylphosphati-dylcholine (C₁₆PC) micelles or in liquid-crystalline DPPC vesicles, indicating that dimer fluorescence efficiency increases in highly packed interfaces. The excitonic theory of Kasha was used to interpret the spectral features. The overall fluorescence quantum yield (φ_r) decreases with decreasing lipid: probe ratio, not only because of the presence of a weakly fluorescent dimer that absorbs a high fraction of the total absorbed light but also due to quenching of monomer emission. This suggests the existence of probe domains. The dimer fluorescence quantum yields (φ_m) were estimated in DPPC large unilamellar vesicles (LUV) and DPPC multilamellar vesicles. The dependence of φ_r with probe concentration is compatible with values of φ_m lower than 0.05. The dimerization equilibrium of MC540 in C₁₆PC micelles and DPPC-LUV was also studied. Apparent dimerization equilibrium constants, K_dapp and dimer absorption spectrum were calculated in C₁₆PC micelles for the first time. The dimerization equilibrium constant in DPPC-LUV was calculated and discussed in terms of the fraction of volume occupied by the lipid phase.     

SUBSTITUTION OF RETINAL BY ANALOGUES IN RETINAL PIGMENTS OF HALOBACTERIUM HALOBIUM. CONTRIBUTION OF BACTERIORHODOPSIN AND HALORHODOPSIN TO PHOTOSENSORY ACTIVITY

Abstract— In Halobacrerium hnlobium. retinal is the chromophore of the light-energy converting pigments bacteriorhodopsin (BR) and halorhodopsin (HR) and of the sensory photosystems. PS 370 and PS 565. In both photosystems as well as in BR and HR. retinal was substituted by retinal analogues. Retinal₂ ( 3,4-dehydro-retinal ) . shifts the main sensitivity maximum of PS 370 and of PS 565 by about 1.5 nm to longer wavelengths. The absorption maxima of BR and HR are both shifted in the same direction, but by 37 nm. 13-Ethylretinal and 13-propylretirnal shift the main sensitivity maximum of each sensory photosystem to shorter wavclengths; the absorption maxima of BR and HR are shifted in the same direction but to a smaller extent. Both sensory photosystems are equally active with retinal and with each of the three analogues as the chromophore. After substitution of retinal by the analogues, the action spectra of PS 565 of the BR-containing strain R₁L₃ show a secondary bensitivity peak in addition to the main peak. This secondary peak matches the absorption maximum of the corresponding BR. In the action spectra of the BR-deficient strainET–15 this secondary peak is missing. Action spectra of PS 565 of the BR-deficient strainL–33, which synthesizes increased amounts of HR. with all retinals show a secondary peak which matches the absorption maximum of the corresponding HR.
The results show that the analogues can substitute retinal in both sensory pigments as well as in BR and HR. Moreover, the data support the previous assumption that both BRand HR, although not required for photosensory activity can contribute to photosensing through PS 565.     

POLARIZED UV-ABSORPTION SPECTRA OF RETINAL ISOMERS—II. ON THE ASSIGNMENT OF THE LOW AND HIGH ENERGY ABSORPTION BANDS

Abstract The polarized UV-absorption spectra of all- trans retinal and both crystal forms of 11- cis , 12-s- cis retinal (presented in the previous paper, Part I) are analyzed using Lowry-Hudson functions to describe the band profiles. The polarization ratios of the polarized bands is used to determine the direction of the corresponding transition moments. For all- trans retinal the polarization spectra show that the absorption between 23 and 36 X 10³ cm⁻¹ is caused by three overlapping bands labeled S, A and B. For 11- cis retinal the B-band is also clearly resolved whereas the S and A bands are separated with much less certainty than for all- trans retinal.
Comparing these bands with the excited state manifold resulting from semiempirical CI-calculations including double excitations, the S-band could be assigned to the ¹A_g⁻→¹A_g-* and the A-band to the ¹A_g⁻→¹B_u+* transition. However, no transition is found in this manifold which could positively be assigned to the B-band because the transitions predicted in this spectral region have negligible oscillator strengths. In all the crystal spectra a further band C is observed around 39 X 10³ cm⁻¹ which is particularly pronounced in the case of 11- cis retinal. For this band an assignment to the ¹A_g⁻→¹A_g+*-transition is proposed.