Solvent effects on the molecular stability,intramolecular hydrogen bond,and π-electron delocalization in the simple RAHB systems with different donors and acceptors: a quantum chemical study

Structural Chemistry - In the present study, solvent effects on the molecular stability, intramolecular hydrogen bond (IMHB), and π-electron delocalization (π-ED) in some of the simple...     

C-X···π halogen and C-H···π hydrogen bonding: interactions of CF3X (X = Cl, Br, I or H) with ethene and propene

Using FTIR and Raman spectroscopy, the formation of halogen bonded complexes of the trifluorohalomethanes CF(3)Cl, CF(3)Br and CF(3)I with ethene and propene dissolved in liquid argon has been investigated. For CF(3)Br and CF(3)I, evidence was found for the formation of C-X···π halogen bonded 1:1 complexes. At a higher ratio of CF(3)I/propene, weak absorptions due to a 2:1 complex were also observed. Using spectra recorded at different temperatures, the complexation enthalpies for the complexes were determined to be -5.3(2) kJ mol(-1) for CF(3)Br·ethene, -7.5(2) kJ mol(-1) for CF(3)I·ethene, -5.6(1) kJ mol(-1) for CF(3)Br·propene, -8.8(1) kJ mol(-1) for CF(3)I·propene and -16.5(6) kJ mol(-1) for (CF(3)I·)(2)propene. The complexation enthalpies of the hydrogen bonded counterparts, with CF(3)H as the Lewis acid, were determined to be -4.6(4) kJ mol(-1) for CF(3)H·ethene and -5.1(2) kJ mol(-1) for CF(3)H·propene. For both hydrogen bonded complexes, a blue shift, by +4.8 and +4.0 cm(-1), respectively, was observed for the C-H stretching mode. The results from the cryospectroscopic study are compared with ab initio calculations at the MP2/aug-cc-pVDZ(-PP) level.     

Reaction of [Pt(NH3)4]Cl2 with NH4VO3 in an Alkaline Solution at 190°C in Autoclave

Russian Journal of General Chemistry - The reaction of [Pt(NH3)4]Cl2 with NH4VO3 in alkaline solution in an autoclave at 190°C was studied. The solid autoclave thermolysis product was...     

Charge density analysis of 2-methyl-4-nitro-1-phenyl-1H-imidazole-5-carbonitrile: an experimental and theoretical study of C≡N···C≡N interactions

The experimental charge density distribution was determined for 2-methyl-4-nitro-1-phenyl-1H-imidazole-5-carbonitryle, using the Hansen-Coppens multipole model. Free R factor calculations were performed with MoPro software to find optimal restraints for a physically meaningful model. The crystal packing is determined to some extent by weak C-H···O and C-H···N hydrogen bonds but mostly by a lateral electrostatic interaction between antiparallel side-by-side C≡N groups. Electrostatic energy calculations were performed based on the experimental data and are in line with the high-level, explicitly correlated theoretical SCS-RI-MP2-F12 calculations of total energy. The molecular dipole moment and atomic charge values were compared for different experimental and theoretical models, to highlight the dependence of the electrostatic property outputs on the applied restraints. Interesting O···O contacts are also described. The results are compared with two recently investigated nitroimidazole derivatives, namely, 1-(2'-aminophenyl)-2-methyl-4-nitroimidazole and 1-phenyl-4-nitroimidazole.     

13C chemical shift tensors in MOF α-Mg3(HCOO)6: Which component is more sensitive to host-guest interaction?

Metal–organic frameworks (MOFs) are a class of important porous materials with many current and potential applications. Their applications almost always involve the interaction between host framework and guest species. Therefore, understanding of host–guest interaction in MOF systems is fundamentally important. Solid-state NMR spectroscopy is an excellent technique for investigating host–guest interaction as it provides information complementary to that obtained from X-ray diffraction. In this work, using MOF α-Mg₃(HCOO)₆ as an example, we demonstrated that ¹³C chemical shift tensor of organic linker can be utilized to probe the host–guest interaction in MOFs. Obtaining ¹³C chemical shift tensor components (δ₁₁, δ₂₂, and δ₃₃, where δ₁₁ ≥ δ₂₂ ≥ δ₃₃) in this MOF is particularly challenging as there are six coordinatively equivalent but crystallographically non-equivalent carbons in the unit cell with very similar local coordination environment. Two-dimensional magic-angle-turning experiments were employed to measure the ¹³C chemical shift tensors of each individual crystallographically non-equivalent carbon in three microporous α-Mg₃(HCOO)₆ samples with different guest species. The results indicate that the δ₂₂ component (with its direction approximately being co-planar with the formate anion and perpendicular to the C−H bond) is more sensitive to the adsorbate molecules inside the MOF channel due to the weak C−H···O hydrogen bonding or the ring current effect of benzene. The ¹³C isotropic chemical shift, on the other hand, seems much less sensitive to the subtle changes in the local environment around formate linker induced by adsorption. The approach described in this study may be used in future studies on host–guest interaction within MOFs.     

Cold collisions of an open-shell S-state atom with a 2Π molecule: N(4S) colliding with OH in a magnetic field

We present quantum-theoretical studies of collisions between an open-shell S-state atom and a (2)Π-state molecule in the presence of a magnetic field. We analyze the collisional Hamiltonian and discuss possible mechanisms for inelastic collisions in such systems. The theory is applied to the collisions of the nitrogen atom ((4)S) with the OH molecule, with both collision partners initially in fully spin-stretched (magnetically trappable) states, assuming that the interaction takes place exclusively on the two high-spin (quintet) potential energy surfaces. The surfaces for the quintet states are obtained from spin-unrestricted coupled-cluster calculations with single, double, and noniterative triple excitations. We find substantial inelasticity, arising from strong couplings due to the anisotropy of the interaction potential and the anisotropic spin-spin dipolar interaction. The mechanism involving the dipolar interaction dominates for small magnetic field strengths and ultralow collision energies, while the mechanism involving the potential anisotropy prevails when the field strength is larger (above 100 G) or the collision energy is higher (above 1 mK). The numerical results suggest that sympathetic cooling of magnetically trapped OH by collisions with ultracold N atoms will not be successful at higher temperatures.     

Structure of water (H2O) 6 − and ammonium (NH3) 13 − clusters with an excess electron: Quantum chemical studies

The B3LYP method within DFT and the ab initio MP2 method with an extended 6-311++G(3df,3pd) basis set are employed to calculate the adiabatic bound state of an excess electron in (H₂O) ₆ ^? water and (NH₃) ₁₃ ^? . ammonium clusters. Adiabatic electron affinity of (H₂O)₆ and (NH₃)₁₃ clusters is 0.03–0.18 eV and 0.18 eV respectively. The calculated vertical binding energies of the excess electron in anionic clusters ((H₂O) ₆ ^? 0.37÷0.66 eV and (NH₃) ₁₃ ^? 0.26 eV) agree well with the experimental values of 0.50 eV and 0.22 eV obtained from photoelectron spectra. A cavity model of solvated electrons in water and ammonium is considered.     

SF(4)·N(C(2)H(5))(3): the first conclusively characterized SF(4) adduct with an organic base

Sulfur tetrafluoride and triethylamine react at low temperatures to form a 1?:?1 adduct. The unambiguous characterization of the SF(4)·N(C(2)H(5))(3), which is only stable at low temperature, proves the Lewis acid property of SF(4) towards organic Lewis bases. The S-N bond has a length of 2.384(2) ? and is an archetypical example of a dative S(IV)← N bonding modality.     

Reactions of azulene and guaiazulene with all-trans-retinal and trans-cinnamaldehyde: comparative studies on spectroscopic, chemical, and electrochemical properties of monocarbenium-ions stabilized by expanded π-electron systems with an azulenyl or 3-guaiazulenyl group

Reaction of azulene (1) with all-trans-retinal in diethyl ether in the presence of hexafluorophosphoric acid at −10 °C for 1 h in a dark room gives the corresponding monocarbenium-ion compound, (2E,4E,6E,8E)-1-azulenyl-3,7-dimethyl-9-(2,6,6-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraen-1-ylium hexafluorophosphate (3), in 74% isolated yield. The spectroscopic, chemical, and electrochemical properties of 3 compared with those of the previously-documented (2E,4E,6E,8E)-1-(3-guaiazulenyl)-3,7-dimethyl-9-(2,6,6-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraen-1-ylium hexafluorophosphate (4) are reported. Along with the above delocalized monocarbenium-ion compounds 3 and 4, stabilized by the expanded π-electron systems possessing an azulenyl (or 3-guaiazulenyl) group, an efficient preparation as well as the spectroscopic, chemical, and electrochemical properties of (2E)-1-azulenyl-3-phenyl-2-propen-1-ylium and (2E)-1-(3-guaiazulenyl)-3-phenyl-2-propen-1-ylium hexafluorophosphates (5 and 6) (90 and 96% isolated yields), having a similar partial structure [i.e., the (2E)-1-azulenyl-2-propen-1-ylium-ion or (2E)-1-(3-guaiazulenyl)-2-propen-1-ylium-ion part] to those of 3 and 4, is documented. Moreover, the crystal structure of 6, whose carbenium-ion framework is planar, is shown.     

Tuning the regio- and stereoselectivity of C-H activation in n-octanes by cytochrome P450 BM-3 with fluorine substituents: evidence for interactions between a C-F bond and aromatic π systems

We employed the water-soluble cytochrome P450 BM-3 to study the activity and regiospecificity of oxidation of fluorinated n-octanes. Three mutations, A74G, F87V, and L188Q, were introduced into P450 BM-3 to allow the system to undergo n-octane oxidation. In addition, the alanine at residue 328 was replaced with a phenylalanine to introduce an aromatic residue into the hydrophobic pocket to examine whether or not van der Waals interactions between a C-F substituent in the substrate and the polarizable π system of the phenylalanine may be used to steer the positioning of the substrate within the active-site pocket of the enzyme and control the regioselectivity and stereoselectivity of hydroxylation. Interestingly, not only was the regioselectivity controlled when the fluorine substituent was judiciously positioned in the substrate, but the electron input into the iron-heme group became tightly coupled to the formation of product, essentially without abortive side reactions. Remarkable enhancement of the coupling efficiency between electron input and product formation was observed for a range of fluorinated octanes in the enzyme even without the A328F mutation, presumably because of interactions of the C-F substituent with the π system of the porphyrin macrocycle within the active-site pocket. Evidently, tightening the protein domain containing the heme pocket tunes the distribution of accessible enzyme conformations and the associated protein dynamics that activate the iron porphyrin for substrate hydroxylation to allow the reactions mediated by the high-valent Fe(IV)=O to become kinetically more commensurate with electron transfer from the flavin adenine dinucleotide (FAD)/flavin mononucleotide (FMN) reductase. These observations lend compelling evidence to support significant van der Waals interactions between the CF(2) group and aromatic π systems within the heme pocket when the fluorinated octane substrate is bound.     

Polymerization of ethene with zirconocene catalysts: an experimental and quantum chemical study of the influence of para-substituent in benzyl in bis{η-(1-benzyl)indenyl}zirconium dichlorides

The meso- and rac-like isomers of bis{η⁵-(1-benzyl)indenyl}zirconium dichloride (5), bis{η⁵-(1-para-methoxybenzyl)indenyl}zirconium dichloride (6), bis{η⁵-(1-para-fluoro-benzyl)indenyl}zirconium dichloride (7) and bis{η⁵-(1-phenylethyl)indenyl}zirconium dichloride (8) were synthesized and isolated. Solid-state structures of meso- and rac-like 5 were determined by X-ray structure analysis. Polymerization properties of the methylaluminoxane (MAO) activated diastereomers of complexes 5-8 were studied in ethene polymerizations under different monomer concentrations. The rac-like isomer of 1-phenylethyl-substituted 8/MAO showed significantly higher activity than the 1-benzyl substituted analogs 5-7/MAO. In addition, rac-8/MAO behaves like a single center catalyst producing polyethene with narrow molar mass distribution (1.8-1.9), while diastereomers of 5-7/MAO produce polymers with molar mass distributions varying from 2.7 up to 10.3. The rac and meso-like isomers of 5-7/MAO have different response on the monomer concentration. Quantum chemical calculations suggest a strong interaction between the benzyl substituent and the electron deficient zirconium center. The phenyl metal coordination energies depend on the electronic properties of the para-substituent. In 8/MAO, due to the ethyl spacer, the coordination does not have a significant role and therefore much higher activity and single center polymerization behavior is observed.     

Cupro(I)-π-complexes with 1-allyloxybenzotriazole: Synthesis and crystal structure of CuBF4 · 2C6H4N3(OC3H5) · H2O and CuCF3COO · C6H4N3(OC3H5)

The crystals of copper(I) π-complexes CuBF₄ · 2C₆H₄N₃(OC₃H₅) · H₂O (I) and CuCF₃COO · C₆H₄N₃(OC₃H₅) (II) were obtained by alternating-current electrosynthesis and studied by X-ray diffraction: I, space group P2₁/n, a = 10.226(8), b = 13.233(10), c = 16.30(1) Å, β = 98.13(1)°, V = 2249(2) ų, Z = 4, R = 0.0705, 577 reflections; I, space group P $ P\bar 1 The crystals of copper(I) π-complexes CuBF₄ · 2C₆H₄N₃(OC₃H₅) · H₂O (I) and CuCF₃COO · C₆H₄N₃(OC₃H₅) (II) were obtained by alternating-current electrosynthesis and studied by X-ray diffraction: I, space group P2₁/n, a = 10.226(8), b = 13.233(10), c = 16.30(1) ?, β = 98.13(1)°, V = 2249(2) ?³, Z = 4, R = 0.0705, 577 reflections; I, space group P , a = 8.8625(7), b = 9.0647(4), c = 9.1650(5) ?, α = 68.37(2)°, β = 85.31(3)°, γ = 69.86(2)°, V = 646(4) ?³, Z = 2, R = 0.1354, 2669 reflections. In compound I, the tetrahedrally distorted trigonal pyramidal environment of the copper atom comprises two nitrogen atoms of two organic molecules (L), the C=C bond of another L molecule, and the O atom of the water molecule. Due to the bridging function of L molecule, infinite chains [Cu · 2C₆H₄N₃(OC₃H₅) · H₂O] _n are formed in the structure along the y axis. The chains are, in turn, assembled into layers through strong O-H…F hydrogen bonds involving both hydrogen atoms of the water molecule and fluorine atoms of the BF₄⁻ anion. In compound II, two bridging oxygen atoms of two trifluoroacetate anions and two copper atoms form a centrosymmetric dimer. The nitrogen atom of the benzotriazole ring of one molecule L and the C=C double bond of the allyl group of the other molecule L complete the distorted coordination tetrahedron of the metal atom. Owing to the bridging function of the L molecule, the [CuCF₃COO · C₆H₄N₃(OC₃H₅)]₂ dimers are connected to form infinite double chains associated in a three-dimensional framework by only weak interactions. The replacement of the covalently bonded trifluoroacetate anion by an outer-sphere tetrafluoroborate ion opens up the possibility for metal atom binding to three L molecules simultaneously. Original Russian Text ? E.A. Goreshnik, M.G. Mys’kiv, 2008, published in Koordinatsionnaya Khimiya, 2008, Vol. 34, No. 11, pp. 826–830.     

Weak Ag···Ag and Ag···π interactions in templating regioselective single and double [2+2] reactions of N,N'-bis(3-(4-pyridyl)acryloyl)-hydrazine: synthesis of an unprecedented tricyclohexadecane ring system

Synthesis of a stereospecific four-twelve-four fused tricyclic compound containing a tetraamide macrocycle has been achieved by the solid state [2+2] reaction through utilization of Ag···Ag interaction. The influence of anions on crystal packing has been utilized for the synthesis of a regioselective mono cyclobutane compound via the Ag···π interactions.     

A New Solvated Phosphoric Triamide, [(C6H4(3-CH3)NH)3P(O)] · (C2H5OH): A Database Analysis of N Atom Geometry in Compounds with an [N]3P(O) Fragment

Abstract

In the crystal structure of the title compound C₂₁H₂₄N₃OP · C₂H₅OH, there are three crystallographically independent phosphoric triamide molecules and three ethanol molecules. The environments of the nitrogen atoms are practically planar. The phosphorus atoms display a distorted tetrahedral environment; the maximum and minimum values of angles are observed for one O?P?N and one N?P?N angles, respectively. In this structure, the phosphoramide and ethanol molecules are linked by some different intermolecular O?H···O and N?H···O hydrogen bonds to form chains. The title solvated compound has been further characterized by IR and ³¹P{¹H}, ¹H and ¹³C NMR spectroscopy. The geometry of the nitrogen atoms in this compound is analyzed and compared with those of analogous structures deposited in the Cambridge Structural Database (CSD; Allen, Acta Cryst. 2002, B58, 380-388).     

Influence of MgHPO4·3H2O and Mg3(PO4)2·8H2O on Thermal Reactions (20°-1000°C) in Solid Solutions with Al2(SO4)3·16H2O

Abstract

The following binary systems were studied: AI₂(SO₄)₃·16H₂0 - MgHPO₄·3H₂O and AI₂(SO₄)₃·16H₂O - Mg₃(P0₄)₂·8H₂0.     

Intermolecular interactions in two (ferrocenylmethyl)benzimidazoles incorporating the 4-MeOC6H4 and 3,4-(MeO)2C6H3 groups: analysis of MeO—C—C distortions from ideal 120° geometry

The title compounds, 1-ferrocenyl­methyl-2-(4-methoxy­phenyl)-1H-benz­imidazole, [Fe(C₅H₅)(C₂₀H₁₇N₂O)], (I), and 2-(3,4-di­methoxy­phenyl)-1-ferrocenyl­methyl-1H-benz­imid­az­ole, [Fe(C₅H₅)(C₂₁H₁₉N₂O₂)], (II), are model electroactive compounds for anion sensor and antimalarial applications. Distortions from the ideal 120° angle about the MeO—C—C groups are evident, with angles of 115.1 (2) and 125.0 (2)° in (I), and 115.9 (2) and 124.6 (2)°, and 115.7 (2) and 125.1 (2)° in (II). The main intermolecular hydrogen bonds in (I) comprise C—H⋯N and C—H⋯π(C₅H₅) interactions, while in (II), only weak C—H⋯π(imidazole) and C—H⋯π(arene) interactions are present.     

Synthesis of 62-electron square planar clusters with group 15 and 16 main group atoms: Structural characterization of Ru4(CO)11(μ4-PPh)(μ4-S) and Ru4(CO)10(μ4-PPh)(μ4-Se)(PEt3): Bonding preferences in cappingNido Ru4(CO)13(μ3-PPh)

Thecloso octahedral cluster Ru₄(CO)₁₁(μ₄-PPh)(μ₄-S)1 and selenium and tellurium analogues, the first examples of unsaturated ruthenium clusters with a planar metal core and different main group 15 and 16 atoms have been synthesized fromnido Ru₄(CO)₁₃(μ₃-PPh). An X-ray analysis of1 and Ru₄(CO)₁₀(μ₄-PPh)(μ₄-Se)(PEt₃)2a has confirmed thetrans disposition of phosphorus and group 16 main group fragments.     

Structural diversity of di and triorganotin complexes with 4-sulfanylbenzoic acid: Supramolecular structures involving intermolecular Sn?O, O-H?O or C-H?X (X = O or S) interactions

Twelve new organotin complexes with 4-sulfanylbenzoic acid of two types: R_nSn[S(C₆H₄COOH)]_4−n (I) (n = 3: R = Me 1, n-Bu 2, Ph 3; PhCH₂4; n = 2: R = Me 5; n-Bu 6, Ph 7, PhCH₂8) and R₃Sn(SC₆H₄COO)SnR₃ · mEtOH (II) (m = 0: R = Me 9, n-Bu 10, PhCH₂12; m = 2: R = Ph 11), along with the 4,4′-bipy adduct of 9, [Me₃Sn(SC₆H₄COO)SnMe₃]₂(4,4-bipy) 13, have been synthesized. The coordination behavior of 4-sulfanylbenzoic acid is monodentate in 1-8 by thiol S atom but not carboxylic oxygen atom. While, in 9-13 it behaves as multidenate by both thiol S atom and carboxylic oxygen atoms. The supramolecular structures of 6, 11 and 13 have been found to consist of 1D molecular chains built up by intermolecular O-H?O, C-H?O or C-H?S hydrogen bonds. The supramolecular aggregation of 7 is 2D network determined by two C-H?O hydrogen bonds. Extended intermolecular C-H?O interactions in the crystal lattice of 9 link the molecules into a 2D network.     

Effects of substituents in the cationic and anionic η<Superscript>3</Superscript>-allylpalladium complexes according to data from <Superscript>13</Superscript>C NMR spectroscopy and quantum chemical calculations

A linear correlation of chemical shifts (δ) of signals in the ¹³C NMR spectra of the unsubstituted terminal carbon atom of the allyl ligand in [(1-R-η³-C₃H₄)Pd]NO₃ (R = Me, CH₂OMe, CO₂Me, COMe, CHO) with the substituent constants σ⁺ and σ^s- in acetone solutions was found. A considerable deviation from linearity was observed for R = Ph. The ¹³C nuclear magnetic screening constants were calculated by the DFT method in the GIAO approximation for equilibrium geometries of the cations [(1-R-η³-C₃H₄)Pd(Me₂C=0)₂]⁺ and anions [(1-R-η³-C₃H₄)PdCl₂]^s-. In the latter case, the theoretical and experimental δ values are consistent. The influence of the substituent R on the geometric parameters and charges on atoms in the neutral, anionic, and cationic η³-allylpalladium complexes is discussed.