Synthesis and structure of a new heptaborate oxoanion isomer: B7O9(OH)5(2-)

The nonmetal borate [H3N(CH2)7NH3][B7O9(OH)5].H2O (1) was prepared via a neat reaction of 1,7-diaminoheptane with excess boric acid under mild nonhydrothermal conditions. Single-crystal X-ray characterization of 1 revealed a new isomer of the heptaborate anion, B7O9(OH)5(2-). The heptaborate anion in 1 is comprised of four fused (BO)3 rings sharing three four-coordinate boron atoms and a single three-coordinate oxygen atom. This anion is a structural isomer of another recently described heptaborate anion, consisting of a chain of three (BO)3 rings. Compound 1 crystallized in the triclinic space group P1 with a=9.3266(17) A, b=10.1222(19) A, c=10.847(2) A, alpha=89.422(2) degrees, beta=82.349(2) degrees, gamma=75.158(2) degrees, V=980.7(3) A3, and Z=2.     

Direct identification of a novel disulfide bond linkage system of new isolated isomer (isomer V) in recombinantly produced h-IGF-I

Insulin-like growth factor I (IGF-I or somatomedin C) is a serum polypeptide with three intramolecular disulfide bonds. In the course of synthesis by the recombinant DNA method, three disulfide bond isomers, all of which have Cys18-Cys61 with three combinations of two disulfide bonds formed by Cys6, Cys47, Cys48 and Cys52, were identified. Natural type, isomer II, was proved to have a Cys6-Cys48, Cys18-Cys61, Cys47-Cys52 disulfide bond system. Now, the fourth isomer, isomer V which doesn't have Cys18-Cys61 disulfide, has been isolated, and its novel disulfide bond linkage system was identified by a chemical synthetic method. The supposed conformation constrained in 3D structure for isomer V would be discussed for its biological activity.     

SiCNN--a new stable isomer with Si(triple bond)C triple bonding

To predict potentially stable molecules with Si(triple bond)C triple bonding, theoretical calculations at the B3LYP/ 6-311G(d) and CCSD(T)/6-311G(2df) (single-point) levels were employed to study the structures, energetics, and isomerization of various SiCN2 isomers. A schematic potential energy surface (PES) of SiCN2 was established to discuss the kinetic stability of the isomers. A new isomer SiCNN was found to possess a typical Si(triple bond)C triple bond, as confirmed by comparative calculations at the B3LYP, QCISD, QCISD(T), CCSD, and CCSD(T) levels on the bond lengths of SiCNN and other experimentally or theoretically known species of RSiCH (R = H, F, Cl, OH). Moreover, SiCNN resides in a very deep potential, the stabilization barrier is at least 53.2 kcal mol(-1). Thus, SiCNN may be considered as the most kinetically stable isomer with Si(triple bond)C triple bonding known to date, and it may represent a very promising molecule for future experimental characterization. In addition, the stability of the other isomers, such as the four linear species SiNCN, SiNNC, NSiCN and NSiNC, a three-membered NNC ring isomer with exocyclic C-Si bonding, and a four-membered SiCNN ring isomer is discussed and compared with SiCNN.     

(13)C-(1)H and (13)C-(13)C NMR J-couplings in (13)C-labeled N-acetyl-neuraminic acid: correlations with molecular structure

N-acetyl-neuraminic acid (Neu5Ac, 2) was prepared enzymatically containing single sites of (13)C-enrichment at C1, C2, and C3. Aqueous solutions of the three (13)C isotopomers were studied by (1)H and (13)C NMR spectroscopy at p(2)H 2 and pH 8 to obtain J(CH) and J(CC) values involving the labeled carbons. Experimental studies were complemented by DFT calculations of the same set of J-couplings in protonated and ionized structural mimics of 2 to determine how well theoretical predictions match the experimental findings in saccharides bearing ionizable functionality. Results show that: (a) (2)J(C2,H3ax/eq) values in 2 depend on anomeric configuration, thus complementing (3)J(C1,H3ax/eq) behavior, (b) J(CH) and J(CC) values involving C2 depend on anomeric configuration, the C1-C2 bond torsion, and solution pH, and (c) long-range (4)J(C2,H7) is sensitive to glycerol side-chain conformation. Intraring J(HH) and most (2)J(CH), (3)J(CH), (2)J(CC), and (3)J(CC) involving C1-C3 of 2 appear largely unaffected by the ionization state of the carboxyl group. In vacuo and solvated DFT calculations of geminal and vicinal J(CH) and J(CC) values are similar and reproduce the experimental data well, but better agreement with experiment was observed for (1)J(C1,C2) in the solvated calculations. The present work provides new information for future treatments of trans-glycoside couplings involving Neu5Ac residues by (a) providing new standard values of intraring J(CC) for coupling pathways that mimic those for trans-glycoside J(CC), (b) identifying potential effects of solution pH on trans-glycoside couplings inferred through the behavior of related intraring couplings, and (c) providing specific guidelines for more reliable DFT predictions of J(CH) and J(CC) values in ionizable saccharides.     

Stereoisomers of perhydrophenanthrene. The synthesis and crystal structure of a derivative of the trans-syn-trans isomer

The trans-syn-trans isomer of perhydrohenanthrene has the central ring in a boat conformation. A crystalline derivative (the dibenzoate of the cis 9,10-diol) was prepared, and the crystal structure was determined. The boat conformation is slightly twisted, as predicted by molecular mechanics.     

Benzenoid isomer enumeration and a new topological paradigm

Benzenoid isomer series possessing a constant number of isomers are reviewed. The benzenoid series having the same isomer number possess a one-to-one matching among their benzenoid membership in regard to molecular symmetry. These results are supplemented and clarified. For a given number of carbons, information regarding all the more stable benzenoids of potential interest to experimentalists is contained in these results.     

NMR structure characterization of a new vinylpyranoanthocyanin-catechin pigment (a portisin)

A new polyphenolic compound, the structure of which corresponds to a pyranomalvidin-3-glucoside linked to a (+)-catechin unit through a vinyl linkage, has been characterized by UV-vis, MS and NMR spectroscopy. This compound was obtained in an aqueous alcoholic solution from the reaction between a malvidin-3-glucoside-pyruvic acid derivative and (+)-catechin in the presence of acetaldehyde.     

Mn(HPO3): A new manganese (II) phosphite with a condensed structure

A new manganese (II) phosphite with the formula Mn(HPO₃) has been synthesised under mild hydrothermal conditions and autogenous pressure. Large pink coloured single crystals were obtained, allowing the resolution of the structure by x-ray diffraction. Mn(HPO₃) crystallises in the P2₁/c monoclinic space group with a=8.036(3) Å, b=8.240(3) Å, c=10.410(3) Å, β=124.73(3)° and Z=8. The structure consists of a three-dimensional, compact framework of edge sharing MnO₆ octahedra linked to phosphite groups via oxygens. The presence of the phosphite anion has been confirmed by IR spectroscopy. Mn(HPO₃) presents a high thermal stability limit of 580 °C, before rapid transformation to Mn₂P₂O₇ occurs. Photoluminescence and diffuse reflectance spectroscopy studies show the presence of high spin Mn(II) in significantly distorted octahedral coordination with Dq and Racah parameters of Dq=820, B=910 and C=3135 cm⁻¹. The ESR spectra, performed at different temperatures, are isotropic with a g-value of 2.00(1). Magnetic measurements indicate global antiferromagnetic interactions with a ferromagnetic transition at 15 K, attributed to a canting of the antiferromagneticaly aligned spins.     

The structure of a new copper(II) complex with 3-methyl-5-carboxylatopyrazole

Molecular and crystal structures of a new complex compound of copper(II) with 3-methyl-5-carboxylatopyrazole (CH₃PzCOO^?) with the composition Cu(CH₃PzCOO)₂·H₂O have been determined by single crystal XRD. It has been demonstrated that the carboxylate ion performs the bridging tridentate function. In the equatorial plane coordination occurs through the pyridine N atom of the pyrazole and one of O atoms of the carboxylate group yielding a five-membered metallocycle CuNOC₂. The second O atom of one of the ligands is bound to the neighboring copper(II) ion affording an infinite linear chain. The coordination polyhedron of the copper atom is a square pyramid, coordination core CuN₂O₃.     

Nitrous oxide dimer: observation of a new polar isomer

Spectra of the nitrous oxide dimer (N2O)2 are studied in the region of the N2O nu1 fundamental band around 2230 cm-1 using a rapid-scan tunable diode laser spectrometer to probe a pulsed supersonic jet expansion. The previously known band of the centrosymmetric nonpolar dimer is analyzed in improved detail, and a new band is observed and assigned to a polar isomer of (N2O)2. This polar form of the dimer has a slipped parallel structure, rather similar to the slipped antiparallel structure of the nonpolar form but with a slightly larger intermolecular distance. The accurate rotational parameters determined here should enable a microwave observation of the polar N2O dimer. The need for a modern ab initio investigation of the N2O-N2O intermolecular potential energy surface is emphasized.     

Application of long range 1H/13C heteronuclear correlation spectroscopy (LR HETCOSY) to structure elucidation: The structure of murayaquinone

The structure of a polyketide-derived, $\text{o}$-phenanthraquinone streptomyces metabolite has been deduced from interpretation of a 2D heteronuclear correlation experiment that reveals long range ¹H-¹³C couplings.     

Ca3Pt(4+x)Ge(13-y) and Yb3Pt4Ge13: new derivatives of the Pr3Rh4Sn13 structure type

The new phases Ca(3)Pt(4+x)Ge(13-y) (x = 0.1; y = 0.4; space group I2(1)3; a = 18.0578(1) ?; R(I) = 0.063; R(P) = 0.083) and Yb(3)Pt(4)Ge(13) (space group P4(2)cm; a = 12.7479(1) ?; c = 9.0009(1) ?; R(I) = 0.061, R(P) = 0.117) are obtained by high-pressure, high-temperature synthesis and crystallize in new distortion variants of the Pr(3)Rh(4)Sn(13) type. Yb(3)Pt(4)Ge(13) features Yb in a temperature-independent non-magnetic 4f(14) (Yb(2+)) configuration validated by X-ray absorption spectra and resonant inelastic X-ray scattering data. Ca(3)Pt(4+x)Ge(13-y) is diamagnetic (χ(0) = -5.05 × 10(-6) emu mol(-1)). The Sommerfeld coefficient γ = 4.4 mJ mol(-1) K(-2) for Ca(3)Pt(4+x)Ge(13-y), indicates metallic properties with a low density of states at the Fermi level in good agreement with electronic structure calculation (N(E(F)) = 3.3 eV(-1)/f.u.)); the Debye temperature (θ(D)) is 398 K.     

13C-labeled platinum(IV)-carbohydrate complexes: structure determination based on (1)H-(1)H, (13)C-(1)H, and (13)C-(13)C spin-spin coupling constants

The reaction of D-mannose and D-allose with [PtMe(3)(Me(2)CO)(3)]BF(4) 1 in acetone affords complexes [PtMe(3)L]BF(4) 5 and 6 (5, L = alpha-D-mannofuranose; 6, L = beta-D-allofuranose). The coordination mode and conformation of the carbohydrate ligands in 5 and 6 in acetone-d(6) have been determined from an analysis of J(HH), J(CH), and J(CC) in complexes formed using site-specific (13)C-labeled D-mannose and D-allose. These coupling data are compared to those measured in (13)C-labeled complex [PtMe(3)L]BF(4) 2 (L = 1, 2-O-isopropylidene-alpha-D-glucofuranose) and 1, 2-O-isopropylidene-alpha-D-glucofuranose 3, whose solid-state structures are known, and in (13)C-labeled 1,2;5, 6-di-O-isopropylidene-alpha-D-glucofuranose 4. The preferred furanose ring conformations in 2 and 5 are very similar ((3)E/E(4) and E(4)/(o)E/E(1), respectively; eastern hemisphere of the pseudorotational itinerary), with platinum coordination involving O3, O5, and O6 of the saccharide. In contrast, the furanose ring of 6 prefers an (4)E/E(o)/(1)E geometry (western hemisphere of the pseudorotational itinerary) resulting from altered complexation involving O1, O5, and O6. Couplings within the exocyclic fragments of 2, 5, and 6 also support the existence of two different platinum coordination modes. In addition to establishing the structures and conformations of 2, 5, and 6 in solution, one-, two-, and three-bond J(CH) and J(CC) observed in these complexes provide new insights into the effect of structure and conformation on the magnitudes of these couplings in saccharides. Weak platinum(IV) complexation with the carbohydrate conformationally restricts the furanose and exocyclic fragment without introducing undesirable structural strain, thereby allowing more reliable correlations between structure and coupling magnitude.     

Photodetachment of NO−2; experimental evidence for a new isomer

The relative cross section for the gas phase photodetachment of electrons has been determined for nitrite ions in the wavelength region 280–740 nm (4.43-1.68 eV). The vertical detachment energy for ONO^? has been determined to be ≈ 2.8 eV. Evidence is presented for a new isomer of NO^?₂.