Comparison of nanotube structures constructed from alpha-, beta-, and gamma-cyclodextrins by potential-controlled adsorption

"Nanotube" structures of the alpha-, beta-, and gamma-cyclodextrins (CyD's), which are similar to that of CyD-polyrotaxane, were constructed by potential-controlled adsorption onto Au(111) surfaces in sodium perchlorate solution without a threaded polymer. CyD molecules adsorbed randomly on bare Au(111) surfaces without potential control and the desorption of CyD's from Au surfaces was observed at a negative potential of less than -0.60 V versus SCE. On the other hand, in the specific range between these potentials, ordered molecular arrays with "nanotube" structures of the CyD's (alpha-, beta-, and gamma-CyD) were observed on Au(111). The range of potentials for formation of the "nanotube" structures of alpha-, beta-, and gamma-CyD was from -0.15 to -0.20 V, from -0.25 to -0.45 V, and from -0.22 to -0.45 V, respectively. beta- and gamma-CyD require a more negative potential for adsorption-induced self-organization (AISO) than alpha-CyD in order to weaken adsorption and induce self-organization. Furthermore, we have succeeded in the visualization of the dynamic process in solution, such as the self-ordering, and the destruction of the nanotube structure. These results indicate that control of the electrode potential facilitates management of the delicate balance of various interactions, resulting in the formation of two-dimensional supramolecular structures on the substrates.     

Linear polypseudorotaxanes possessing many metal centers constructed from inclusion complexes of alpha-, beta-, and gamma-cyclodextrins with 4,4'-dipyridine

Three cyclodextrin-based complexes, 1-3, bearing external coordination sites for metal cations were prepared in satisfactory yields (over 50%) by reactions of alpha-, beta-, and gamma-cyclodextrins with 4,4'-dipyridine in aqueous solutions. Subsequently, these inclusion complexes were further assembled to form linear polypseudorotaxanes 4-6 through the coordination linkage of Ni(II) or Cu(II) ions, and their assembly behaviors were comprehensively investigated in both solutions and the solid state by means of 1H NMR, FT-IR, UV-vis spectroscopy, conductivity titration, powder X-ray diffraction patterning, thermogravimetric and differential thermal analysis, scanning electron microscopy, scanning tunneling microscopy, and transmission electron microscopy. The results showed that these polypseudorotaxanes existed as individual linear arrays at a low concentration but tended to form polymeric rodlike fibers at a relatively high concentration. Significantly, the volume of the cyclodextrin cavity used not only determined the inclusion complexation stoichiometry between cyclodextrin and 4,4'-dipyridine but also predominated the morphology of resulting polypseudorotaxanes.     

Molecular electrostatic potentials and electron densities in nitroazacubanes

Successive introduction of nitrogen atoms in the cubyl corners instead of C-NO2 groups of octanitrocubane (CNO2)8, the most powerful explosives known to date, leads to a class of energy-rich compounds known as nitroazacubanes. In present work the ab initio Hartree-Fock and hybrid density functional calculations have been carried out on the possible conformers of (CNO2)(8-alpha)Nalpha (with alpha=0-8), nitroazacubanes. The charge distributions in these systems have been derived using the topography of the molecular electrostatic potential and electron density. Molecular electrostatic potential investigations reveal that of different nitroazacubane conformers, the electron-rich regions around nitro oxygens of the lowest energy conformer having face opposite nitrogen atoms within a cube are more delocalized. These conformers are predicted to have the largest difference of the energies of the highest occupied molecular orbital and lowest unoccupied molecular orbital relative to the other conformers. The dipole moments of nitroazacubanes are dependent on the nitrogen sites within a cube, caused by the resultant of C-N bond moments and nearly insensitive to position of the NO2 groups. The lowest frequency vibration (522 cm(-1)) suggests octa-azacubane having robust structure in the nitroazacubane series. Substitution of nitrogen atom instead of C-NO2 group leads to increase in electron density at the bond critical point of the X-N (X=C or N) bonds in a cube. The heats of formation of different nitroazacubanes were calculated by using the isodesmic reaction approach. The present calculation has shown that for the di- though hexanitroazacubanes the most destabilized conformer possess largest dipole moment and the heat of formation as well. A linear correlation of the electron density at the bond critical point of X-N bonds and the heat of formation has been obtained.     

Micellar behavior of aqueous solutions of dodecyldimethylethylammonium bromide, dodecyltrimethylammonium chloride and tetradecyltrimethylammonium chloride in the presence of alpha-, beta-, HPbeta- and gamma-cyclodextrins

Conductivity, static fluorescence and (1)H NMR measurements have been carried out to study the micellar behavior of aqueous solutions of dodecyldimethylethylammonium bromide (DDAB), dodecyltrimethylammonium chloride (DTAC) and tetradecyltrimethylammonium chloride (TDAC) in absence and presence of alpha-cyclodextrin (alpha-CD), beta-cyclodextrin (beta-CD), hydroxypropyl-beta-cyclodextrin (HPbeta-CD) and gamma-cyclodextrin (gamma-CD). The conductivity measurements were carried out at 298.15 K. The influence of cyclodextrins on the micellar parameters, such as cmc* (apparent critical micellar concentration), beta (degree of ionization) have been analyzed. Thermodynamics of the systems was discussed in terms of the change in standard free energy of micellization, DeltaG(m)(0). Micellization was found to be less spontaneous in presence of cyclodextrins. The fluorescence intensity of the surfactant solutions is enhanced by the addition of cyclodextrins. The association constants obtained from conductivity and fluorescence data suggest the binding of gamma-CD with the surfactants to be strongest among all the cyclodextrins used. (1)H NMR chemical shift changes provide powerful means for probing the cyclodextrin-micellar interactions and inclusion of surfactant is shown by the change in the chemical shift of some of the guest and host protons in comparison with the chemical shifts of the same protons in the free compounds.     

1H NMR studies of maltose,maltoheptaose, alpha-, beta-, and gamma-cyclodextrins,and complexes in aqueous solutions with hydroxy protons as structural probes

The (1)H NMR chemical shifts, coupling constants, temperature coefficients, and exchange rates have been measured for the hydroxy protons of aqueous solutions of alpha-, beta-, and gamma-cyclodextrins, maltose, and maltoheptaose. In cyclodextrins (CDs), the high chemical shift of the O(3)H signal and its small (3)J(OH,CH) value suggest that O(3)H is involved in a hydrogen bond. The small temperature coefficients and rate of exchange values of O(2)H and O(3)H confirm the involvement of O(3)H in hydrogen bonding and indicate that O(2)H is the hydrogen bond partner. In maltose, two distinct NMR signals with two different vicinal coupling constants are found for O(2')H. A cross-peak in the ROESY spectrum indicates chemical exchange between the O(2')H and O(3)H protons. The existence of two distinct NMR signals with different J values for O(2')H shows the influence of anomeric configuration on the O(2')H-O(3)H interaction. The effect of complexation with methyl benzoate, adamantane-1-carboxylic acid, adamantane-1-ol, and l- and d-tryptophane on the NMR spectra of the hydroxy protons of alpha-, beta-, and gamma-cyclodextrins and of maltose has been investigated. No significant spectral changes were observed upon addition of methyl benzoate and adamantane-1-carboxylic acid. The addition of adamantane-1-ol resulted in an upfield shift and a strong broadening of the O(2)H signal from alpha-CD, and a small temperature coefficient was measured upon complexation. The O(2)H and O(3)H signals in beta-CD were broadened and shifted downfield upon addition of l- and d-tryptophane.     

Molecular electrostatic potentials from PCILO wave functions

The molecular electrostatic potentials for several small molecules were investigated using PCILO wave functions at different stages of the perturbation expansion. The utility of the localized picture within the PCILO framework can be shown, even at zeroth order only. For simplicity the approximation of fixed standard bond polarities could be introduced in order to reproduce shape and values of the potential with a sufficient degree of accuracy.     

Molecular surface electrostatic potentials of anticonvulsant drugs

The computed molecular surface electrostatic potentials of a group of anticonvulsants of various chemical types were investigated with the objective of identifying common features that may be related to their activities. The calculations were carried out with the density functional B3P86/6-31G* procedure, using HF/STO-3G*-optimized geometries. Analysis of several statistically based properties of the surface potentials indicates that the negative regions are of primary importance and that an optimum intermediate level of local polarity, or internal charge separation, is required. © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1137–1143, 1998     

Molecular electrostatic potentials and electron densities in azatriprismanes and nitroazatriprismanes

Triprismane, a C₆H₆ isomer of benzene, belongs to a class of strained hydrocarbons. In this work, the energy and charge distributions in a series of aza (C₆NH_6–) and nitroaza (CNO₂)_6–N, (with =1...6) derivatives of triprismane have been analyzed using the ab initio Hartree–Fock (HF)-derived molecular electrostatic potentials and molecular electron densities. Electrostatic potential investigations have shown that the electron-rich regions around nitrogen along a series of azatriprismanes and those near oxygens of nitro group in nitroazatriprismanes become smaller on encompassing from the hexanitroaza to nitroazatriprismane. As revealed from the molecular electrostatic potential (MESP) topography for the series of azatriprismanes the MESP minimum near nitrogen become shallow with increasing nitrogen content. Heats of formation obtained from the isodesmic reaction approach in the C₆N₆H_6– and (CNO₂)_6–N series correlate well with the electron density at the bond-critical point of the X— N (X = C or N) bonds of the triprismane framework.SPG is grateful to the Council of Scientific and Industrial Research (CSIR project 01(1772)/02/EMR-II), New Delhi, India. KAJ thanks CSIR for the Junior Research Fellowship. Thanks are due to C-DAC, Pune, for providing computational facilities.     

Molecular electrostatic potentials. Negative potentials associated with some methyl and methylene groups

It is shown that both CH₃ and CH₂ groups can give rise to negative electrostatic potentials. Several examples are presented and discussed, including both molecules which do and which do not show these effects.     

Comparison of highly sulfated alpha-, beta-, and gamma-cyclodextrins and 18-crown-6-tetracarboxylic acid for the enantiomeric separation of some amino acids and derivatives by capillary electrophoresis.

18-Crown-6-tetracarboxylic acid (18C6H4) and highly sulfated cyclodextrins (HS-alpha-, beta-, gamma-CDs) are highly selective chiral selectors for the enantioseparation of solutes bearing the primary amino function. Excellent resolutions were obtained for all solutes on HS-gamma-CD and on 18C6H4. The former, however, is by far the best chiral selector for the solutes studied in this work because the highest resolution is obtained with the shortest migration times. The reversal of the D- and L-migration order on HS-CDs compared to 18C6H4 is an interesting feature for the determination of enantiomeric excess.     

alpha-, beta-, and gamma-Cyclodextrin dimers. Molecular modeling studies by molecular mechanics and molecular dynamics simulations.

The alpha-, beta-, and gamma-cyclodextrin (CyD) dimers have been studied by molecular mechanics (MM) and molecular dynamics (MD) calculations, and the relative stability of dimers and the involved molecular interactions have been determined. Three possible orientations were considered for the alpha-, beta-, and gamma-CyD dimers: the head-to-head, the head-to-tail, and the tail-to-tail. In vacuo MM calculations were used to obtain the most stable arrangements, and MD simulations were performed over all energy minima obtained for each dimer. Results from MD always show head-to-head orientation as the most stable as a result of the larger number of intermolecular hydrogen bonds present.     

Molecular surface electrostatic potentials in the analysis of non-hydrogen-bonding noncovalent interactions

Electrostatic potentials computed on molecular surfaces are used to analyse some noncovalent interactions that are not in the category of hydrogen bonding, e.g. “halogen bonding”. The systems examined include halogenated methanes, substituted benzenes,s-tetrazine and l,3-bisphenylurea. The data were obtained byab initio SCF calculations.     

Molecular electrostatic potentials: Comparison of ab initio and CNDO results

The possibilities of utilization of CNDO wave functions for computing molecular electrostatic potentials are studied by comparison with ab initio results for H₂O and H₂CO.

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Zusammenfassung Die Möglichkeiten der Verwendung von CNDO-Wellenfunktionen zur Berechnung molekularer elektrostatischer Potentiale werden durch Vergleich mit ab initio Rechnungen für H₂O und H₂CO untersucht.

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Résumé Les possibilités d'utilisation de fonctions d'onde CNDO pour le calcul des potentiels électrostatiques moléculaires sont étudiées par comparaison avec des résultats ab initio pour H₂O et H₂CO.

     

Molecular electrostatic potentials of divalent carbon(0) compounds

The molecular electrostatic potentials of divalent carbon(0) and divalent carbon(ii) compounds are calculated and the results are compared with theoretically predicted proton affinities and complexation energies with BH(3).     

Electronic structure, molecular electrostatic potential and hydrogen bonding in DMSO-X complexes (X = ethanol, methanol and water)

In the present work, we have studied the electronic structure, molecular electrostatic potential (MEP) and hydrogen bonding in DMSO-ethanol, DMSO-methanol and DMSO-water complexes by employing the MP2 method. Different conformers were simulated on the basis of possible binding sites guided by molecular electrostatic potential topology. The stronger hydrogen bonded interaction lowers the energy of the conformer. Molecular electron density topology and natural bond orbital analysis were used to explain the strength of interactions. Experimental vibrations are also compared with the calculated normal vibrations. Blue shift is predicted for SC vibration in experimental and theoretical spectra as well. Molecular electrostatic potential and topology are used to understand the interaction strength of the conformer.     

Quantitative approach for the screening of cyclodextrins by nuclear magnetic resonance spectroscopy in support of chiral separations in liquid chromatography and capillary electrophoresis enantioseparation of norgestrel with alpha-, beta- and gamma-cyclodextrins

A quantitative NMR approach is proposed for the screening of cyclodextrins with regard to their enantioselectivity as chiral mobile phase additives in column reversed-phase chromatography and capillary electrophoresis. Similarities and differences between the mechanism of enantiomeric peak-separation in NMR and HPLC and CE are interpreted. The affinity of d-norgestrel to bind to (alpha-, beta-, gammay-) cyclodextrins in aqueous solution was quantified and compared by determining the association constants from chemical shift data. The association constant of l-norgestrel was estimated from titration of the racemate. Differences between the apparent association constants of the enantiomerically pure drug and the racemate are discussed from the point of view of enantiomeric competition for the cyclodextrin. The apparent association constants and chiral selectivities determined by 'H NMR for dl-norgestrell/gamma-CD system at various water-methanol ratios are correlated with the corresponding chromatographic results found in the literature. The pitfalls of previously proposed screening methods based on comparison of chemical shift differences with separation parameters are discussed.     

Recognizing alpha-, beta- or gamma-substitution in pyridines by mass spectrometry

A general mass spectrometric method able to recognize the site of substitution of monosubstituted pyridines is described. The method requires that the molecule under investigation forms, upon ionization and dissociation, the respective alpha-, beta- or gamma- pyridinium ion of m/z 78. Pyridinium ions are stable and common fragments of ionized and protonated pyridines and are found to function as appropriate structurally diagnostic fragment ions. They can be identified by their characteristic and nearly identical collision-induced dissociation behavior and distinguished by the combined use of two structurally diagnostic ion/molecule reactions with acetonitrile and 2-methyl-1,3-dioxolane. alpha-, beta- or gamma-substitution in pyridines can, therefore, be securely recognized via an MS-only method based on structurally diagnostic ions and by the inspection of a single molecule (no need for intracomparisons within the whole set of isomers).     

Molecular structures, hydrogen bonding and electrostatic interactions of 3-(2-bromo-pyridinium)-propionic acid and 3-(pyridinium)-pivalic acid halides

Intra- and intermolecular interactions and the conformations of 3-(2-bromo-pyridinium)-propionic acid bromide (1) and 3-(pyridinium)-pivalic acid chloride (2) have been studied by X-ray diffraction and theoretically. In these complexes, Br⁻ and Cl⁻ anions are H-bonded to the COOH group and interact electrostatically with the positively charged nitrogen atoms of neighbouring molecules. To analyse these interactions theoretically, the structures of monomers and dimers in various configurations were optimized by PM3 and BLYP/6-31G(d,p) methods. The analysis confirmed the vital role of both the H-bonds and electrostatic interactions (intra- and intermolecular) for the molecular conformation and the ionic aggregation in the solid state.