1H NMR spectroscopic study of hydrogen bonds and mobile NH protons in aqueous solutions of porphyrin ions

The concentration and temperature dependence of the chemical shifts of aromatic and -protons of tetra-meso substituted porphyrin ions in aqueous solution have been investigated. A considerable increase in the localization temperatures of interior NH protons of porphyrins dissolved in water compared to solutions of porphyrins in organic solvents was observed. Types of association of the porphyrins studied and the possibility of intra- and intermolecular hydrogen bonds are discussed.State Science Center, Institute of Biophysics, Ministry of Public Health, Moscow 123182. Institute of Biological and Medicinal Chemistry, Russian Academy of Medical Science, Moscow 119832, Russia. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 4, pp. 535–541, April, 1998.     

Interplay between hydrogen bond formation and multicenter pi-electron delocalization: intermolecular hydrogen bonds

The interplay between aromatic electron delocalization and intermolecular hydrogen bonding is thoroughly investigated using multicenter delocalization analysis. The effect on the hydrogen bond strength of aromatic electron delocalization within the acceptor and donor molecules is determined by means of the interaction energies between monomers, calculated at the B3LYP/6-311++G(d,p) level of theory. This magnitude is compared to variations of multicenter electron delocalization indices and covalent hydrogen bond indices, which are shown to correlate perfectly with the relative values of the interaction energies for the different complexes studied. The multicenter electron delocalization indices and covalent bond indices have been computed using the quantum theory of atoms in molecules approach. All the hydrogen bonds are formed with oxygen as the acceptor atom; however, the atom bonded to the donor hydrogen has been either oxygen or nitrogen. The water-water complex is taken as reference, where the donor and acceptor molecular environments are modified by substituting the hydrogens and the hydroxyl group by phenol, furan, and pyrrole aromatic rings. The results here shown match perfectly with the qualitative expectations derived from the resonance model.     

An anion receptor with NH and OH groups for hydrogen bonds

An anion receptor with NH and OH groups as hydrogen bond donors has been prepared, and both groups are simultaneously involved in hydrogen bonding with anions.     

Vibrational study of intermolecular hydrogen bonds in dichloroanilines

The stretching infrared bands of the amine groups associated by intermolecular hydrogen bonding in solid polyethylene solution have been identified at 140 cm⁻¹ in 3,4 dichloaniline and at 176 and 215 cm⁻¹ in 2,6 dichloroaniline. That assignment has been carried out using medium- and far-infrared spectroscopy and some theoretical considerations.     

Competition between cation-pi interactions and intermolecular hydrogen bonds in alkali metal ion-phenol clusters. II. Phenol trimer

The competition between ion-molecule and molecule-molecule interactions was investigated in M+(phenol)3 cluster ions for M=Li, Na, K, and Cs. Infrared predissociation spectroscopy in the O-H stretch region was used to characterize the structure of the cluster ions. By adjusting the experimental conditions, it was possible to generate species where argon was additionally bound in order to investigate cold cluster ions. From a comparison of the M+(phenol)3 spectra with the M+(phenol)3Ar spectra, it is clear that the relative populations of hydrogen-bonded configurations are significantly higher in the colder (argon-bearing) species. For the cold species, the IR spectra were compared with minimum energy ab initio calculations to elucidate the hydrogen-bonded structures. The experimental spectra are most consistent with a cyclic hydrogen-bonded configuration for Cs+(phenol)3 in which the ion binds to the phenol molecules via cation-pi interactions, and noncyclic configurations for Li+, Na+, and K+.     

Competition between cation-pi interactions and intermolecular hydrogen bonds in alkali metal ion-phenol clusters. I. Phenol dimer

The competition between ion-molecule and molecule-molecule interactions was investigated in M+(phenol)2 cluster ions for M=Li, Na, K, and Cs. Infrared predissociation spectroscopy in the O-H stretch region was used to characterize the structure of the cluster ions. By adjusting the experimental conditions, it was possible to generate species where argon was additionally bound in order to investigate cold cluster ions. The spectra showed the presence of hydrogen bonding in the colder M+(phenol)2Ar cluster ions but the absence of hydrogen bonding in the warmer M+(phenol)2 species. For the cold species, the IR spectra were compared with minimum-energy ab initio calculations to elucidate the hydrogen-bonded structures. In the dominant hydrogen-bonded configurations observed experimentally, the phenol molecules form hydrogen-bonded dimers and the alkali-metal ions bind to the phenol via a cation-pi interaction with the aromatic ring. Increasing the strength of the cation-pi interaction by decreasing the ion size forces the distance between the phenol O-H groups to increase, thus weakening the intermolecular hydrogen bond. Free-energy differences of different configurations relative to the ground state demonstrate that hydrogen-bonded structures are enthalpically favored, while non-hydrogen-bonded structures are entropically favored and are thus observed in the warm cluster ions.     

Relationship between calculated NMR data and intermolecular hydrogen bond properties in X-pyridine⋯HF

The effect of different substituents in para and metapositions on the NMR data of X-pyridine?HF complex has been studied at B3LYP/6-311++G(d,p) level of theory. The relationship between NMR data and electron donation of substituents has been investigated. The results of topological properties of electron charge density calculated using atoms in molecules (AIM) analysis can be used to predict some NMR data. The magnetism-based indices, nucleus independent chemical shift NICS(1) and its z component NICS(1)_ZZ, were used to investigate the ring aromaticity changes on complexation. A linear correlation between Hammett coefficients and some NMR data could be found with a good correlation coefficient.     

Asymmetry induction by cooperative intermolecular hydrogen bonds in surface-anchored layers of achiral molecules.

The mesoscale induction of two-dimensional supramolecular chirality (formation of 2D organic domains with a single handedness) was achieved by self-assembly of 1,2,4-benzenetricarboxylic (trimellitic) acid on a Cu(100) surface at elevated temperatures. The combination of spectroscopic [X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine structure (NEXAFS)], real-space-probe [scanning tunneling microscopy (STM)], and computational [density functional theory (DFT)] methods allows a comprehensive characterization of the obtained organic adlayers, where details of molecular adsorption geometry, intermolecular coupling, and surface chemical bonding are elucidated. The trimellitic acid species, comprising three functional carboxylic groups, form distinct stable mirror-symmetric hydrogen-bonded domains. The chiral ordering is associated with conformational restriction in the domains: molecules anchor to the substrate with an ortho carboxylate group, providing two para carboxylic acid moieties for collective lateral interweaving through H bonding, which induces a specific tilt of the molecular plane. The ease of molecular symmetry switching in domain formation makes homochiral-signature propagation solely limited by the terrace width. The molecular layer modifies the morphology of the underlying copper substrate and induces mum-sized strictly homochiral terraces.     

Proton and deuterium NMR of hydrogen bonds: Relationship between isotope effects and the hydrogen bond potential

The difference in chemical shift between hydrogen bonded protons and deuterons has been examined both theoretically and experimentally. It is shown that valuable information about the hydrogen bond potential can be extracted from this isotope effect on chemical shifts.     

Intra- and intermolecular hydrogen bonds in ethylene glycol,monoethanolamine, and ethylenediamine

The structures of ethylene glycol, aminoethanol, ethylenediamine, and their dimers with the formation of hydrogen bonds of different types are optimized by density functional theory (DFT) using hybrid functional B3LYP in the basis of 6-31++G(d,p), 6-311++G(2d,2p) and aug-CC-pVTZ. Energies of interactions, hydrogen bond parameters, and oscillation frequency are calculated, and NBO analysis is performed. The types of hydrogen bonds formed in dimers of 1,2-disubstituted ethanes X-CH₂-CH₂-Y (X, Y = OH, NH₂) are established.     

Direct evaluation of individual hydrogen bond energy in situ in intra- and intermolecular multiple hydrogen bonds system

The results of evaluating the individual hydrogen bond (H-bond) strength are expected to be helpful for the rational design of new strategies for molecular recognition or supramolecular assemblies. Unfortunately, there is few obvious and unambiguous means of evaluating the energy of a single H-bond within a multiple H-bonds system. We present a local analytic model, ABEEMσπ H-bond energy (HBE) model based on ab initio calculations (MP2) as benchmark, to directly and rapidly evaluate the individual HBE in situ in inter- and intramolecular multiple H-bonds system. This model describes the HBE as the sum of electrostatic and van der Waals (vdW) interactions which all depend upon the geometry and environment, and the ambient environment of H-bond in the model is accounted fairly. Thus, it can fairly consider the cooperative effect and secondary effect. The application range of ABEEMσπ HBE model is rather wide. This work has discussed the individual H-bond in DNA base pair and protein peptide dimers. The results indicate that the interactions among donor H atom, acceptor atom as well as those atoms connected to them with 1,2 or 1,3 relationships are all important for evaluating the HBE, although the interaction between the donor H atom and the acceptor atom is large. Furthermore, our model quantitatively indicates the polarization ability of N, O, and S in a new style, and gives the percentage of the polarization effect in HBE, which can not be given by fixed partial charge force field.     

Relative strengths of NH..O and CH..O hydrogen bonds between polypeptide chain segments

Correlated ab initio calculations are used to compare the energetics when the CH and NH groups of the model dipeptide CHONHCH2CONH2 are each allowed to form a H-bond with the proton acceptor O of a peptide group. When the dipeptide is in its C7 conformation, the NH..O H-bond energy is found to be 7.4 kcal/mol, as compared to only 2.8 kcal/mol for the CH..O interaction. On the other hand, the situation reverses, and the CH..O H-bond becomes stronger than NH..O, when the dipeptide adopts a C5 structure. This reversal is important as C5 is nearly equal in stability to C7 for the dipeptide, and is representative of the commonly observed beta-sheet structure in a protein. Immersing the dipeptide-peptide pair in a model solvent weakens both sorts of H-bonds, and in a fairly uniform manner. Consequently, the trends observed in the in vacuo situation retain their validity in either aqueous solution or the protein interior. Likewise, the desolvation penalty, suffered by removing a H-bonded complex from water and placing it in the less polar interior of a protein, is quite similar for the NH..O and CH..O bonds.     

Glycosylidene Carbenes. Part 9. Regioselective glycosidation of diols and triols: Intra- and intermolecular hydrogen bonds

Glycosidation of the myo-inositol derivatives 2 and 3 by the diazirine 1 yields 90% of a diastereoisomer pair of β-D -glycosides in a 1:1 ratio, i.e. 5/6 and 7/8 , respectively (Scheme 1). The crystal structure of 3 shows a strong intramolecular H-bond, which persists in solution, as indicated by FT-IR and ¹H-NMR spectra. Yields and diastereoselectivity are lower for the glycosidation of 24 by 1 (Scheme 3). The resulting 1,2- and 1,4-linked disaccharides 25–28 were isolated as their acetates 29–32 . The previously determined crystal structure of 24 shows no intramolecular H-bonds. The yield of the glycosidation of 24 , but not of 3 , depends upon the concentration, indicating that activation of 24 by intermolecular H-bonds is required. Glycosidation of 2 and 3 with the trichloroacetimidate 14 gave mixtures of four ( 5,6,15 , and 16 ), and six ( 7,8 , and 17–20 ) disaccharides, respectively (Scheme 2).     

Heteronuclear intermolecular resonance-assisted hydrogen bonds. The structure of pyrrole-2-carboxamide (PyCa)

The crystal and molecular structure of pyrrole-2-carboxamide (PyCa) determined by single crystal X-ray diffraction is presented. Molecular conformations of PyCa are also analyzed by FT-IR and NMR techniques. Additionally DFT calculations at the B3LYP/6-311++G(d,p) level of approximation are performed for dimers of PyCa and for related species. The existence of two tautomeric forms for the analyzed dimers differing in H-bond motifs, N-H...O or O-H...N, is studied. The geometrical and energetic features of such H-bonds show that these interactions may be classified as intermolecular resonance-assisted hydrogen bonds. Additionally the Bader theory is applied to determine and to analyze bond critical points.