XeNA: An automated ‘open-source’ Xe hyperpolarizer for clinical use

Here we provide a full report on the construction, components, and capabilities of our consortium’s “open-source” large-scale (~ 1 L/h) ¹²⁹Xe hyperpolarizer for clinical, pre-clinical, and materials NMR/MRI (Nikolaou et al., Proc. Natl. Acad. Sci. USA, 110, 14150 (2013)). The ‘hyperpolarizer’ is automated and built mostly of off-the-shelf components; moreover, it is designed to be cost-effective and installed in both research laboratories and clinical settings with materials costing less than $125,000. The device runs in the xenon-rich regime (up to 1800 Torr Xe in 0.5 L) in either stopped-flow or single-batch mode—making cryo-collection of the hyperpolarized gas unnecessary for many applications. In-cell ¹²⁹Xe nuclear spin polarization values of ~ 30%–90% have been measured for Xe loadings of ~ 300–1600 Torr. Typical ¹²⁹Xe polarization build-up and T₁ relaxation time constants were ~ 8.5 min and ~ 1.9 h respectively under our spin-exchange optical pumping conditions; such ratios, combined with near-unity Rb electron spin polarizations enabled by the high resonant laser power (up to ~ 200 W), permit such high P_Xe values to be achieved despite the high in-cell Xe densities. Importantly, most of the polarization is maintained during efficient HP gas transfer to other containers, and ultra-long ¹²⁹Xe relaxation times (up to nearly 6 h) were observed in Tedlar bags following transport to a clinical 3 T scanner for MR spectroscopy and imaging as a prelude to in vivo experiments. The device has received FDA IND approval for a clinical study of chronic obstructive pulmonary disease subjects. The primary focus of this paper is on the technical/engineering development of the polarizer, with the explicit goals of facilitating the adaptation of design features and operative modes into other laboratories, and of spurring the further advancement of HP-gas MR applications in biomedicine.     

Double proton transfer in crystals of 1,3,4,6,7,8‐hexahydro‐2H‐pyrimido[1,2‐a] pyrimidine (hppH): 13C and 15N CPMAS NMR study of (hppH)2

In this paper, we report an example of intermolecular solid‐state proton transfer in the bicyclic guanidine, hppH. A combination of X‐ray crystallography, CPMAS NMR (¹³C and ¹⁵N) and theoretical calculations allows us to determine that a double proton transfer takes place in the (hppH)₂ dimer with an activation energy of about 50 kJ mol^?1. According to the B3LYP/6‐311++G(d,p) calculations, the double proton transfer occurs non‐symmetrically through a zwitterion. Copyright © 2009 John Wiley & Sons, Ltd.     

Flip-back, an old trick to face highly contrasted relaxation times: application in the characterization of pharmaceutical mixtures by CPMAS NMR

The ¹³C–¹H CPMAS with flip-back pulse NMR experiment is revisited in view of applications to pharmaceutical mixtures. The analysis of the kinetics of relaxation and CP transfer with and without the flip-back pulse shows that a significant gain in ¹³C signal can be expected (thus in experimental time) from the flip-back pulse for protons with long T₁. The gain is of the order of T₁ of the protons expressed in seconds. The experiment is applied on samples with highly contrasted spin-lattice relaxation times T₁ for protons, situation encountered in pharmaceutical mixtures. The application of the flip-back increases significantly the relative signal intensity of the component with the longer T₁, making this component detectable even after using short recycle delays. Therefore, this CPMAS with flip-back experiment could be used routinely to get ¹³C CPMAS NMR spectra of mixtures in constant experimental time and signal-to-noise ratio without the need for optimization of the recycle delays, and for whatever may be the degree of crystallinity of the active principal ingredient (API) and/or excipients.     

Understanding the leaching properties of heterogenized catalysts: a combined solid-state and PHIP NMR study

Para-hydrogen induced polarization (PHIP) NMR in solution, combined with solid-state NMR, can be efficiently employed for the highly sensitive in-situ detection of the leaching properties of immobilized catalysts. The knowledge of this property is important for possible applications of PHIP experiments in medicine, biology or industry, where leached catalysts poison the solution of hyperpolarized products. As experimental example Wilkinson's catalyst RhCl(PPh(3))(3) (1) immobilized on mesoporous silica is chosen. As model reaction the hydrogenation of styrene in solvents with different polarities (methanol-d(4), acetone-d(6) and benzene-d(6)) is used. A (31)P solid-state MAS-NMR study reveals that there are two different species of catalysts on the silica, namely coordinatively bound catalysts and physisorbed catalyst. Only the second species exhibits substantial leaching, which is visible in a strong PHIP enhancement of the reaction product.     

Sensitivity enhancement of the central-transition signal of half-integer spin quadrupolar nuclei in solid-state NMR: features of multiple fast amplitude-modulated pulse transfer

Sensitivity enhancement of solid-state NMR spectrum of half-integer spin quadrupolar nuclei under both magic-angle spinning (MAS) and static cases has been demonstrated by transferring polarisation associated with satellite transitions to the central m=-1/2-->1/2 transition with suitably modulated radio-frequency pulse schemes. It has been shown that after the application of such enhancement schemes, there still remains polarisation in the satellite transitions that can be transferred to the central transition. This polarisation is available without having to wait for the spin system to return to thermal equilibrium. We demonstrate here the additional sensitivity enhancement obtained by making use of this remaining polarisation with fast amplitude-modulated (FAM) pulse schemes under both MAS and static conditions on a spin-3/2 and a spin-5/2 system. Considerable signal enhancement is obtained with the application of the multiple FAM sequence, denoted as m-FAM. We also report here some of the salient features of these multiple FAM sequences with respect to the nutation frequency of the pulses and the spinning frequency.     

Temperature calibration for high-temperature MAS NMR to 913 K: 63Cu MAS NMR of CuBr and CuI, and 23Na MAS NMR of NaNbO3

The solid-state phase transitions of CuBr, CuI and NaNbO₃ can be readily observed using ⁶³Cu and ²³Na high-temperature magic-angle spinning nuclear magnetic resonance spectroscopy. Temperature has large, linear effects on the peak maximum of ⁶³Cu in each solid phase of CuBr and CuI, and there is large jump in shift across each phase transition. The ²³Na MAS NMR peak intensities and the line widths in NaNbO₃ also clearly show its high-temperature transition to the cubic phase. These data can be used to calibrate high-temperature MAS NMR probes up to 913 K, which is two hundred degrees higher than the commonly-used temperature calibration based on the chemical shift of ²⁰⁷Pb in Pb(NO₃)₂.     

From crystalline to glassy gallium fluoride materials: an NMR study of Ga and Ga quadrupolar nuclei

Owing to the implementation of acquisition techniques specific for nuclei with very large quadrupolar interaction (full shifted echo and variable offset cumulative spectra (VOCS)), NMR spectra of ⁶⁹Ga and ⁷¹Ga are obtained in crystallised (PbGaF₅, Pb₃Ga₂F₁₂, Pb₉Ga₂F₂₄ and CsZnGaF₆) and glassy (PbF₂–ZnF₂–GaF₃) gallium fluorides. Simulations of both static (full echo or VOCS) and 15 kHz MAS spectra allow to obtain consistent determinations of isotropic chemical shifts and very large quadrupolar parameters (ν_Q up to 14 MHz). In the crystalline compounds whose structures are unknown, the number and the local symmetry of the different gallium sites are tentatively worked out. For the glassy systems, a continuous Czjzek's distribution of the NMR quadrupolar parameters accounts for the particular shape of the NMR spectrum.     

Progress in correlation spectroscopy at ultra-fast magic-angle spinning: basic building blocks and complex experiments for the study of protein structure and dynamics

Recent progress in multi-dimensional solid-state NMR correlation spectroscopy at high static magnetic fields and ultra-fast magic-angle spinning is discussed. A focus of the review is on applications to protein resonance assignment and structure determination as well as on the characterization of protein dynamics in the solid state. First, the consequences of ultra-fast spinning on sensitivity and sample heating are considered. Recoupling and decoupling techniques at ultra-fast MAS are then presented, as well as more complex experiments assembled from these basic building blocks. Furthermore, we discuss new avenues in biomolecular solid-state NMR spectroscopy that become feasible in the ultra-fast spinning regime, such as sensitivity enhancement based on paramagnetic doping, and the prospect of direct proton detection.     

An NMR study of the interaction between Melanin Free Acid and Mn ions as a model to mimic the enhanced proton relaxation rates in melanotic melanoma

The interaction of a soluble Melanin Free Acid (MFA) from Sepia melanin with Mn²⁺ ions is investigated by measuring the proton water relaxation rates. The similarity between MFA and the parent melanin is assessed by means of their high resolution ¹³C cross polarization magic angle spinning NMR spectra. The observed marked increase in longitudinal proton relaxation rates and the characteristic 1/T₁ NMRD profile are associated to the formation of a macromolecular metal complex. The presence of similar paramagnetic species is expected to cause the high contrast shown by melanotic tissues in MRI.     

The PAW/GIPAW approach for computing NMR parameters: a new dimension added to NMR study of solids

In 2001, Mauri and Pickard introduced the gauge including projected augmented wave (GIPAW) method that enabled for the first time the calculation of all-electron NMR parameters in solids, i.e. accounting for periodic boundary conditions. The GIPAW method roots in the plane wave pseudopotential formalism of the density functional theory (DFT), and avoids the use of the cluster approximation. This method has undoubtedly revitalized the interest in quantum chemical calculations in the solid-state NMR community. It has quickly evolved and improved so that the calculation of the key components of NMR interactions, namely the shielding and electric field gradient tensors, has now become a routine for most of the common nuclei studied in NMR. Availability of reliable implementations in several software packages (CASTEP, Quantum Espresso, PARATEC) make its usage more and more increasingly popular, maybe indispensable in near future for all material NMR studies. The majority of nuclei of the periodic table have already been investigated by GIPAW, and because of its high accuracy it is quickly becoming an essential tool for interpreting and understanding experimental NMR spectra, providing reliable assignments of the observed resonances to crystallographic sites or enabling a priori prediction of NMR data. The continuous increase of computing power makes ever larger (and thus more realistic) systems amenable to first-principles analysis. In the near future perspectives, as the incorporation of dynamical effects and/or disorder are still at their early developments, these areas will certainly be the prime target.     

“Anomalous” pseudodielectric function of GaN: Experiment, modelling and application to the study of surface properties

Studying GaN films exposed to Ar plasma by spectroscopic ellipsometry and reflectance, we found an “anomalous” pseudodielectric function (PDF) for which the imaginary part is significantly higher as compared to GaN, while the real part of the PDF remains close to the value for GaN. In addition, a higher reflectance at low angles of incidence was observed. The data are explained in terms of a thin highly absorbing surface layer arising due to non-stoichiometry in the near-surface region. Comparison to samples grown by molecular beam epitaxy shows that similar mechanisms are responsible for optical properties of the surfaces of films obtained under Ga-rich conditions.     

Multifrequency time-resolved EPR (9.5GHz and 95GHz) on covalently linked porphyrin-quinone model systems for photosynthetic electron transfer: effect of molecular dynamics on electron spin polarization

Covalently linked porphyrin–quinone model systems for photosynthetic electron transfer were examined by using time-resolved electron paramagnetic resonance (TREPR) at intermediate magnetic field and microwave frequency (0.34T/9.5GHz, X-band) and high field and frequency (3.4T/95GHz, W-band). The paramagnetic transients studied were the light-induced spin-correlated radical pair states of the donor–acceptor complex in polar solvents below the melting point and in the soft glass phase of a liquid crystal. It is shown that the systems form strongly exchange-coupled radical pairs, whose TREPR lineshapes are determined mainly by fast electron recombination together with both spin–lattice relaxation and modulation of the exchange interaction. Below the melting point the spin–lattice relaxation rate naturally slows down, but that of the spin on the quinone site is still of the order of 10⁶ s^-1. Most probably this is due to contributions from spin–rotation interaction, and dependent on the molecular orientation with respect to the magnetic field. This relaxation anisotropy is related to anisotropic motion of the quinone site in the solvent cage. The results allow conclusions to be drawn concerning the molecular dynamics and flexibility of the systems. To yield long-lived radical pair states that would mimic photosynthetic electron transfer, the two mechanisms described, modulation of exchange and spin–rotation interactions, have to be suppressed by reducing the molecular flexibility of the complex.     

MHD flow study of viscous fluid through a complex wavy curved surface due to biomimetic propulsion under porosity and second-order slip effects

The steady laminar flow of viscous fluid from a curved porous domain under a radial magnetic field is considered. The fluid flow by a curved domain is due to peristaltic waves present at the boundary walls. The whole analysis is based on porosity(Darcy number) effects. Moreover, the effects of second-order slip on the rheology analysis are also discussed. Due to the complex nature of the flow regime, we have governed the rheological equations by using curvilinear coordinates in the fixed frame. The physical influence of magnetic(Hartmann number) and porosity(Darcy number)parameters on the rheological features of peristaltic transportation are argued in detailed(in the wave frame). Additionally, in the current study, the complex wavy pattern on both boundary walls of the channel is used. The whole rheological study is based on ancient, but medically valid,assumptions of creeping phenomena and long wavelength assumptions. Analytical solutions of the governing equations are obtained by using the simple integration technique in Mathematica software 11.0. The core motivation of the present analysis is to perceive the physical influence of embedded parameters, such as the dimensionless radius of the curvature parameter, magnetic parameter, porosity parameter, different amplitude ratios of complex peristaltic waves, first-and second-order slip parameters, on the axial velocity, pressure gradient, local wall shear stress,tangential component of the extra-stress tensor, pumping and trapping phenomena.     

Cooperativity in a spin transition ferrous polymer: Interacting domain model, thermodynamic, optical and EPR study

A new thermodynamic model is proposed in order to account for the high spin low spin conversion in metal-organic polymers. The model, based on the idea that the spin conversion occurs in interacting domains of like-spin metal ions, allows to explain most of the important features of various types of spin conversion. The sine qua non condition of the existence of spin transitions with hysteresis is obtained. In the case of very large cooperativity, the model predicts unusual behaviour of the spin conversion system due to a low-temperature metastable high spin state. Existence of such a state is interesting in the context of the light induced excited spin state trapping recently observed in some ferrous compounds. The model is applied to interpret the spin transition in polycrystalline ferrous polymer [Fe _1-y Cu _y (Htrz)₂ trz] (BF ₄) with y = 0.00, 0.01 and 0.10, detected by differential scanning calorimetry, optical reflectivity and electron paramagnetic resonance. The domain size and the interaction energy between the domains are estimated as, respectively, n = 11 and for the y = 0 compound. As the copper content is growing, n and tend to decrease, resulting in transformations of the shape of hysteresis loop which becomes less steep, narrows and shifts to lower temperatures. The electron paramagnetic resonance gives further evidence of the presence of like-spin domains. Received 27 November 1998 and Received in final form 19 April 1999     

A non-thermal lattice gas model for a dimer-trimer reaction on a catalytic surface: A computer simulation study

The kinetics of an irreversible dimer-trimer reaction of the type 3A₂ + 2B₃ → 6AB have been studied using a non-thermal (precursor mechanism) model on a square as well as on a hexagonal lattice surface by Monte Carlo simulation. When the range of the precursors (A atoms) is increased, the model gives production rates (reactive window widths) that are quite large as compared with those for thermal (Langmuir-Hanshelwood mechanism) model. The phase diagrams qualitatively resemble with the standard ZGB model except that the continuous transition point is eliminated when the range of the precursors is extended up to the third nearest neighbourhood. The diffusion of A atoms on the surface as well as their desorption from the surface with a certain probability is also considered to see their effects on the reaction mechanism.     

An idealized radiative transfer scheme for use in a mechanistic general circulation model from the surface up to the mesopause region

A new and numerically efficient method to compute radiative flux densities and heating rates in a general atmospheric circulation model is presented. Our method accommodates the fundamental differences between the troposphere and middle atmosphere in the long-wave regime within a single parameterization that extends continuously from the surface up to the mesopause region and takes the deviations from the gray limit and from the local thermodynamic equilibrium into account. For this purpose, frequency-averaged Eddington-type transfer equations are derived for four broad absorber bands. The frequency variation inside each band is parameterized by application of the Elsasser band model extended by a slowly varying envelope function. This yields additional transfer equations for the perturbation amplitudes that are solved numerically along with the mean transfer equations. Deviations from local thermodynamic equilibrium are included in terms of isotropic scattering, calculating the single scattering albedo from the two-level model for each band. Solar radiative flux densities are computed for four energetically defined bands using the simple Beer-Bougert-Lambert relation for absorption within the atmosphere. The new scheme is implemented in a mechanistic general circulation model from the surface up to the mesopause region. A test simulation with prescribed concentrations of the radiatively active constituents shows quite reasonable results. In particular, since we take the full surface energy budget into account by means of a swamp ocean, and since the internal dynamics and turbulent diffusion of the model are formulated in accordance with the conservation laws, an equilibrated climatological radiation budget is obtained both at the top of the atmosphere and at the surface.     

Adsorption structure and spin polarization of pentacene on a magnetized Fe(1 0 0) substrate: SPMDS and ERDA study

The adsorption structure and spin-resolved electronic structure of pentacene on Fe(1 0 0) surfaces were investigated using elastic recoil detection analysis (ERDA) and spin-polarized metastable deexcitation spectroscopy (SPMDS), respectively. It was found that the pentacene molecule adsorbs with its molecular plane parallel to the surface in the initial stage of growth, while the molecular plane tilted from the surface with the increase of the coverage. In the pentacene-Fe surface interaction, a donation and backdonation interaction was indicated. It was found that the polarity of the spin polarization induced in the pentacene molecular orbitals was opposite to each other between the orbitals contributing to the donation and those contributing to the backdonation.     

A half-moment model for radiative transfer in a 3D gray medium and its reduction to a moment model for hot, opaque sources

We present in this paper a new 3D half-moment model for radiative transfer in a gray medium, called the model, which uses maximum entropy closure. This model is a generalization to 3D of the 1D version recently proposed in (J. Comp. Phys. 180 (2002) 584). The direction space Ω is divided into two pieces, Ω⁺ and Ω^-, in a dynamical way by the plane perpendicular to the total radiative flux, and the half moments are defined from these subspaces. The model closure and the integrations of the radiative transfer equation performed on the moving Ω^± spaces are detailed. 1D planar results, which have motivated the extension of the model of (J. Comp. Phys. 180 (2002) 584) to multi-dimensions, are shown. These results are very good. The model is thereafter derived for 3D spherically symmetric geometry, where the correctness of the non-trivial border terms can be checked. Two 3D spherically symmetric problems are numerically solved in order to show the accuracy of the closure and the role of the border terms. Once again, compared to the solution obtained with a ray tracing solver, results are very good. From the 3D half-moment model, a new moment model, called , is derived for the particular case of a 3D hot and opaque source radiating into a cold medium, for applications such as simulations of stellar atmospheres and fires. Two-dimensional numerical results are presented and compared to those obtained solving the RTE and with other moment models. They demonstrate the very good accuracy of the model, its good convergence properties, and better prediction compared to all other existing moment models in its domain of applicability.     

Numerical study of magneto-convective heat and mass transfer from inclined surface with Soret diffusion and heat generation effects: A model for ocean magnetic energy generator fluid dynamics

A mathematical model is developed for steady state magnetohydrodynamic (MHD) heat and mass transfer flow along an inclined surface in an ocean MHD energy generator device with heat generation and thermo-diffusive (Soret) effects. The governing equations are transformed into nonlinear ordinary differential equations with appropriate similarity variables. The emerging two-point boundary value problem is shown to depend on six dimensionless thermophysical parameters - magnetic parameter, Grashof number, Prandtl number, modified Prandtl number, heat source parameter and Soret number in addition to plate inclination. Numerical solutions are obtained for the nonlinear coupled ordinary differential equations for momentum, energy and salinity (species) conservation, numerically, using the Nachtsheim–Swigert shooting iteration technique in conjunction with the Runge–Kutta sixth order iteration scheme. Validation is achieved with Nakamura's implicit finite difference method. Further verification is obtained via the semi-numerical Homotopy analysis method (HAM). With an increase in magnetic parameter, skin friction is depressed whereas it generally increases with heat source parameter. Salinity magnitudes are significantly reduced with increasing heat source parameter. Temperature gradient is decreased with Prandtl number and salinity gradient (mass transfer rate) is also reduced with modified Prandtl number. Furthermore, the flow is decelerated with increasing plate inclinations and temperature also depressed with increasing thermal Grashof number.     

Pulsed magnetic field exposure during pregnancy and implications for NMR foetal imaging: a study with mice

Following the recent progress in NMR imaging of the foetus in utero an investigation has been made of the effect of exposure to strong pulsed magnetic fields on the pregnancy of mice and the post natal development of their litters. 23 pregnant mice received exposures ranging from 3.5-12kT/s with pulse periods in the range 0.33-0.56ms at various times during gestation. A similar number of pregnant mice served as controls. No adverse effect was observed on the pregnancy. There was no significant difference between the litter numbers and growth rates of the exposed litters compared with controls. The implications of these results are discussed with regard to the safety of NMR imaging during pregnancy.