Towards universal substituent constants: Parameterizing bond critical point properties with electronegativity descriptors

The properties of substituents have long been quantified by their effect elsewhere in a molecule. Ideally, intrinsic properties detailing the true properties of a substituent would be used. These properties are ideally transferable between molecules, to be robust and applied in different situations. Through a study on the bond critical point (BCP) properties of 117 substituents and 17 substrates we find that BCP properties from the quantum theory of atoms in molecules are not transferable between different bonded atoms. However, a substituent's changing electronegativity between substrates help quantify the observed variation. The relationship between changing electronegativities and critical point properties enables development of a relationship to predict critical point properties between a substituent and a new substrate, using only the electronegativity of a substituent attached to hydrogen, and the critical point property between the substituent and H.     

A simple theory of the interaction between polymer brushes immersed in a supercritical fluid

We use a simple two-order parameter model to describe the interaction between the brushes of polymers terminally attached to flat surfaces immersed in a supercritical solvent. Our approach makes it possible to take into account the high compressibility of the supercritical solvent, which proves to give a significant contribution to the disjoining force acting between polymer brushes. Our theory explains why the interaction between brushes can change from repulsive to attractive with decreasing solvent density. This theoretical finding is verified by making a comparison with recent computer simulations. A reasonably good agreement between the results of the present theory and the simulations is found.     

Interactions between crossed hair fibers at the nanoscale

The atomic force microscope fiber probe is used to directly measure the forces and friction between two human hairs under various conditions. It is shown that the forces between the hair fibers in solution can be well explained by a DLVO interaction and that cationic surfactant modifies the interactions in a manner entirely consistent with current views of adsorption behavior. A Coulombic attraction occurs between the crossed hair fibers in air due to the heterogeneity of the surface, and at shorter separations a clear dispersion interaction is observed. Exposure of the hair to a bleaching solution leads to the removal of the adhesion and solely a double-layer interaction. Two crossed hair fibers obey Amontons' classic law of friction, with a linear relation between applied load and frictional force, allowing the determination of a friction coefficient; positively charged surfactant adsorption is shown to reduce the friction coefficient between the fibers in a manner consistent with boundary lubrication by a palisade layer.     

Rydberg atom mediated polar molecule interactions: a tool for molecular-state conditional quantum gates and individual addressability

We study the possibility to use interaction between a polar molecule in the ground electronic and vibrational state and a Rydberg atom to construct two-qubit gates between molecular qubits and to coherently control molecular states. A polar molecule within the electron orbit in a Rydberg atom can either shift the Rydberg state, or form a Rydberg molecule. Both the atomic shift and the Rydberg molecule states depend on the initial internal state of the polar molecule, resulting in molecular state dependent van der Waals or dipole-dipole interaction between Rydberg atoms. Rydberg atoms mediated interaction between polar molecules can be enhanced up to 10(3) times. We describe how the coupling between a polar molecule and a Rydberg atom can be applied to coherently control molecular states, and specifically, to individually address molecules in an optical lattice, and to non-destructively readout molecular qubits.     

The relation between high-density and very-high-density amorphous ice

The exact nature of the relationship between high-density (HDA) and very-high-density (VHDA) amorphous ice is unknown at present. Here we review the relation between HDA and VHDA, concentrating on experimental aspects and discuss these with respect to the relation between low-density amorphous ice (LDA) and HDA. On compressing LDA at 125 K up to 1.5 GPa, two distinct density steps are observable in the pressure-density curves which correspond to the LDA --> HDA and HDA --> VHDA conversion. This stepwise formation process LDA --> HDA --> VHDA at 125 K is the first unambiguous observation of a stepwise amorphous-amorphous-amorphous transformation sequence. Density values of amorphous ice obtained in situ between 0.3 and 1.9 GPa on isobaric heating up to the temperatures of crystallization show a pronounced change of slope at ca. 0.8 GPa which could indicate formation of a distinct phase. We infer that the relation between HDA and VHDA is very similar to that between LDA and HDA except for a higher activation barrier between the former. We further discuss the two options of thermodynamic phase transition versus kinetic densification for the HDA --> VHDA conversion.     

The bridging force between two plates by polyelectrolyte chains

The interaction between particles in a colloidal system can be significantly affected by their bridging by polyelectrolyte chains. In this paper, the bridging is investigated by using a self-consistent field approach which takes into account the van der Waals interactions between the segments of the polyelectrolyte molecules and the plates, as well as the electrostatic and volume exclusion interactions. A positive contribution to the force between two plates is generated by the van der Waals interactions between the segments and the plates. This positive (repulsive) contribution plays an important role in the force when the distances between the plates are small. With increasing van der Waals interaction strength between segments and plates, the force between the plates becomes more repulsive at small distances and more attractive at large distances. When the surfaces of the plates have a constant surface electrical potential and a charge sign opposite to that of the polyelectrolyte chains, the force between the two plates becomes less attractive as the bulk polyelectrolyte concentration increases. This behavior is due to a higher bulk counterion concentration dissociated from the polyelectrolyte molecules. At short distances, the force between plates is more repulsive for stiffer chains. A comparison between theoretical and experimental results regarding the contraction of the interlayer separation between the platelets of vermiculite clays against the concentration of poly(vinyl methyl ether) was made.     

Quantitative measurement of friction between single microspheres by friction force microscopy

The sliding friction between single silica microspheres was examined by applying friction force microscopy to probe the interaction between spherical silica particles glued to a tipless atomic force microscopy (AFM) cantilever and another particle glued to a glass slide. A three-dimensional model handling the complex contact geometry between spherical particles was established to compute friction and normal forces at the sliding interface from measured deflections of the AFM cantilever. Results obtained at different loads show a linear relationship between friction and normal force, with a friction coefficient of 0.4 between silica spheres. Friction in this system occurs at multi-asperity contacts. The results show that the macroscopic friction law of Amontons can be used to model the friction behavior of micrometer-sized granular matter. For plasma-treated silica particles, increased friction as well as wear could be observed during sliding.     

Hydrogen‐Bonding Induced Cooperative Effect on the Energy Transfer in Helical Polynorbornenes Appended with Porphyrin‐Containing Amidic Alanine Linkers

Polynorbornenes appended with porphyrins containing a range of different linkers are synthesized. The use of bisamidic chiral alanine linkers between the pending porphyrins and the polymeric backbone has been shown to bring the adjacent porphyrin chromophores to more suitable orientation for exciton coupling owing to hydrogen bonding between the adjacent linkers. The hydrogen bonding between the adjacent pendants in these polymers may induce a cooperative effect and therefore render single‐handed helical structures for these polymers. Such a cooperative effect is reflected in the enhancement of FRET efficiencies between zinc–porphyrin and free base porphyrin in random copolymers.     

THE ROLE OF INTERFACIAL INTERACTIONS IN THE PARTICLE/BUBBLE ATTACHMENT

The Van Oss surface thermodynamic theory of polar and apolar interfacial interactions was extended to the interaction between mineral surfaces and bubbles across liquid media. The acid base (polar) interfacial interactions are supposed to be responsible for the hydration repulsion between a hydrophilic mineral and a bubble as well as for the hydrophobic attraction between a hydrophobic mineral and the bubble.     

Interaction between dendrons directly studied by single-molecule force spectroscopy

In this article, we have investigated the interaction between two poly(benzyl ether) dendrons directly by single-molecule force spectroscopy. For this purpose, one dendron was immobilized on an AFM tip through a poly(ethylene glycol) (PEG) spacer, and the other dendron was anchored on a gold substrate as a self-assembled monolayer. Two dendrons approached and then interacted with each other when the AFM tip and the substrate moved close together. The rupture force between dendrons was measured while the AFM tip and the substrate separated. PEG as a flexible spacer can function as a length window for recognizing the force signals and avoiding the disturbance of the interaction between the AFM tip and the substrate. The interaction between two first-generation dendrons is measured to be about 224 pN at a force loading rate of 40 nN/s. The interaction between second- and first-generation dendrons rises to 315 pN at the same loading rate. Such interactions depend on the force loading rate in the range of several to hundreds of nanonewtons per second, indicating that the rupture between dendrons is a dynamic process. The study of the interaction between surface-bound dendrons of different generations provides a model system for understanding the surface adhesion of molecules with multiple branches. In addition, this multiple-branch molecule may be used to mimic the sticky feet of geckos as a man-made adhesive.     

Hydration force between model hydrophilic surfaces: computer simulations

We performed molecular dynamics simulations to study the interactions between model hydrophilic plates made of carbon atoms distributed on a hexagonal lattice. Although neutral, the plates carry equal amounts of positive and negative charges to represent physical dipoles. Using the thermodynamic perturbation theory we calculated the potential of mean force (PMF) acting between the plates as a function of the distance between these plates. We observed that, at distances when more than one water layer can be found between the plates, the contribution of water into the PMF can be either attractive or repulsive depending on the correlation between the charges situated on the plates.     

Influence of Mg2+ and Cd2+ on the interaction between sparfloxacin and calf thymus DNA

Mg(2+) and Cd(2+) have different binding capacity to sparfloxacin, and have different combination modes with calf thymus DNA. Selecting these two different metal ions, the influence of them on the binding constants between SPFX and calf thymus DNA, as well as the related mechanism have been studied by using absorption and fluorescence spectroscopy. The result shows that Cd(2+) has weak binding capacity to SPFX in the SPFX-Cd(2+) binary system, but can decrease the binding between SPFX and DNA obviously in SPFX-DNA-Cd(2+) ternary system. Mg(2+) has strong binding capacity to SPFX. It can increase the binding between SPFX and DNA at concentrations <0.01 mM, and decrease the binding between them at concentrations >0.01 mM. Referring to the different modes of Mg(2+) and Cd(2+) binding to DNA, the mechanism of the influence of metal ions on the binding between SPFX and DNA has been proposed. SPFX can directly bind to DNA by chelating DNA base sites. If a metal ion at certain concentration mainly binds to DNA bases, it can decrease the binding constants between SPFX and DNA through competing with SPFX. While if a metal ion at certain concentration mainly binds to phosphate groups of DNA, it can increase the binding constants by building a bridge between SPFX and DNA. The influence direction of metal ions on the binding between quinolone and DNA relays on their binding ratio of affinity for bases to phosphate groups on DNA. Our result supports Palumbo's conclusion that the binding between SPFX and the phosphate groups is the precondition for the combination between SPFX and DNA, which is stabilized through stacking interactions between the condensed rings of SPFX and DNA bases.     

Diffusion and kinetics of solvent-free reaction between molecular crystals by time-resolved powder UV-Vis reflection spectrum

Traditionally, chemical reaction between solids has been considered to typically occur on a geological time scale without the benefit of high temperature, due to diffusion block in the solids. However, recent advancements have revealed that many solvent-free reactions between molecular crystals can quickly occur at room or near-room temperature. These reactions have raised a novel scientific question as to how the reactive species can overcome the diffusion-controlled kinetic limitations under such moderate conditions. From time-resolved powder UV-vis reflection spectra and optical micrographs with the reaction between dimethylglyoxime and Ni(Ac) 2.4H 2O and the reaction between hexamethylenetetramine and CoCl 2.6H 2O as models, we found that the solvent-free reaction really occurs at an intermediate state between the solid state and the liquid state. Formation of the liquid phase provides a convenient approach to diffusion of reactive species, whereas formation of a solid product layer hampered the transfer of reactive species. Both factors led to a broad reactive rate band in the long reaction region. The results have explained the diffusion mechanism of the fast reaction between the molecular crystals under moderate conditions.     

Formation of ternary complexes between a macrotricyclic host and hetero-guest pairs: an acid-base controlled selective complexation process

A triptycene-based cylindrical macrotricyclic host can include diquat and electron-rich aromatics simultaneously to form stable ternary complexes, which is stabilized not only by a charge-transfer (CT) interaction between electron-rich and electron-deficient guests but also by the face to face pi-stacking interactions between the host and the guests. Moreover, a selective complexation process between a ternary complex containing benzidine and a binary complex can be effectively controlled by the use of acid and base.     

Differentiation of walnut wood species and steam treatment using ATR-FTIR and partial least squares discriminant analysis (PLS-DA)

Wood is a ubiquitous material used in everyday life. Accurate identification of species can be of importance in a historical context enabling appropriate conservation treatment and adequate choice of material to be applied to historic wooden objects, and in a more modern context, in the identification of forgeries. Wood is also often treated to improve certain physical characteristics, often strength and durability. However, determination of whether or not a piece of wood has been treated can be very difficult. Infrared spectroscopy has previously been applied to differentiate between different wood species or between treated and untreated wood, often in conjunction with chemometric analysis techniques. Here, we report the use of mid-IR spectroscopy, coupled with partial least squares discriminant analysis for the discrimination between two walnut wood species and to differentiate between steam-treated and untreated samples of each of these wood species. We show that the discrimination between species and between steam-treated and non-steam-treated wood from Juglans nigra is very clear and, while analysis of the quality of the discrimination between steam-treated and non-steam-treated J. regia samples is not as good, it is, nevertheless, sufficient for discrimination between the two groups with a statistical significance of P < 0.0001.     

Optimization of solid-phase microextraction conditions using a response surface methodology to determine organochlorine pesticides in water by gas chromatography and electron-capture detection.

A response surface methodology was applied to optimise the solid-phase microextraction (SPME) conditions using a polyacrylate-coated fiber to determine thirteen organochlorine pesticides from water. Analyses were performed using gas chromatography-electron-capture detection. Variables affecting absorption in both the headspace and immersion extraction were optimised by using a response surface generated with a Doehlert design, and the results were compared. The immersion SPME method was selected since higher recoveries were obtained for most of the compounds studied. The method developed was applied to the analysis of tap and Ebro river water samples. The linear range of most pesticides for real samples was found to be between 0.001 and 2.5 micrograms l-1 and the limits of detection were between 0.15 and 0.35 ng l-1. The repeatability and the reproducibility between days of the method (n = 6), expressed as relative standard deviation, for tap water spiked at a level of 1 ng l-1 were between 5.7 and 25.6% and between 7.6 and 26.5%, respectively.     

Evaluation of the abilities of ��-cyclodextrin to form complexes by surface plasmon resonance with a Biacore? system

Although phase-solubility studies have often been used to evaluate the interaction of cyclodextrins (CDs) with various drugs, hundreds of milligrams of both CD and drug are required to prepare a phase diagram. A method that would require considerably less material for evaluating complex formation between a CD and guest compound is therefore needed. We previously reported the detection of the interactions between ??-CD and various drugs using a Biacore^® system. In this study, we succeeded in immobilizing 6-monodeoxy-6-monoamino-??-CD on the gold surface of a sensor chip and in detecting the interactions between the immobilized ??-CD and various drugs. The interaction processes were kinetically analyzed using Biacore^®. The surface plasmon resonance sensorgrams indicated that the association and dissociation rates of the interactions between ??-CD and drugs were faster than those between ??-CD and drugs. Although the association constants calculated from the sensorgrams were smaller than those calculated from phase-solubility studies, good correlation was shown between these data.     

NMR study of water bound to soft segments in thermoplastic elastomers

The interaction between water absorbed in four hard-soft segment block-copolymers and the polymer chains is investigated by pulsed field gradient echo NMR spectroscopy and Nuclear Overhauser NMR spectroscopy. The results show, depending on the structure and mass fraction of the soft segments, a strong interaction between water and the soft segments. Most likely this is due to a hydrogen bond between water and the ether groups. The self-diffusion of water has been determined and is described as a jumping process between the ether sites with a residence time t and a time between sites t. It is found that the residence time is of the order of a few ns and also that the ratio t/τ decreases with increasing soft segment rigidity.     

Dielectric medium effects on collective surface plasmon coupling interactions in oligothiophene-linked gold nanoparticles

The near-field coupling interactions between surface plasmon modes of neighboring metal nanoparticles (NPs) are investigated in thin films of oligothiophene-linked Au NPs. The oligothiophene linker facilitates near-field coupling between adjacent NPs, and disruption of the conjugation in the oligothiophene by chemical oxidation leads to a decrease in surface plasmon resonance (SPR) coupling between neighboring particles. The SPR coupling between NPs was found to be highly dependent on the dielectric constant of the medium that the films are exposed to, where a higher dielectric medium leads to weaker coupling. The dependence of the SPR coupling on the dielectric constant of the medium is explained using electrodynamic theory.     

A computational study of the correlations between structure and dynamics in free and surface-immobilized single polymer chains

The correlations between structure and dynamics in free and surface-immobilized polymers were investigated via Langevin dynamics simulations of a free-jointed homopolymer. A detailed analysis was performed for a polymer in free solution and a polymer attached to a surface. The cases of repulsive and attractive surfaces, as well as poor and good solvents, were considered. The analysis focuses on properties that are particularly relevant to single molecule measurements, namely: (1) the distribution of end-to-end distance, (2) the correlations between the conformational structure and the time scale of its motion, (3) the correlations, at equilibrium, between the end-to-end distance and its displacement, and (4) the correlation between the initial coil conformation and the collapse pathway into the globular state. The differences and similarities between this model and a previously considered model of a protein, with two-state folding kinetics and a well-defined native state, are also discussed.