The energy and geometric characteristics of the transition state in reactions of RO<Stack><Subscript>2</Subscript><Superscript>•</Superscript></Stack> with carbonyl compound C-H bonds

The energy and geometry of the transition state in reactions of the ethyl peroxyl radical with ethane, ethanol (its α and β C-H bonds), acetone, butanone-2, and acetaldehyde were calculated by the density functional theory method. In all these reactions (except EtO_2/? + ethanol α C-H bond), the C…H…O reaction center has an almost linear configuration (φ = 176° ± 2°); polar interaction only influences the r ^≠ (C…O) interatomic bond. In the reaction of EtO_2/? with the ethanol α C-H bond, it is the O-H…O H-bond formed in the transition state that determines the configuration of the reaction center with the angle φ(C…H…O) = 160°. The results were used to estimate the r ^≠ (C…H) and r ^≠ (O…H) interatomic bonds in the transition state by the method of intersecting parabolas and the contribution of polar interaction to the activation energy of reactions between peroxyl radicals and aldehydes and ketones.     

On the equivalence of conformational and enantiomeric changes of atomic configuration for vibrational circular dichroism signs

We study systematically the vibrational circular dichroism (VCD) spectra of the conformers of a simple chiral molecule, with one chiral carbon and an "achiral" alkyl substituent of varying length. The vibrational modes can be divided into a group involving the chiral center and its direct neighbors and the modes of the achiral substituent. Conformational changes that consist of rotations around the bond from the next-nearest neighbor to the following carbon, and bond rotations further in the chain, do not affect the modes around the chiral center. However, conformational changes within the chiral fragment have dramatic effects, often reversing the sign of the rotational strength. The equivalence of the effect of enantiomeric change of the atomic configuration and conformational change on the VCD sign (rotational strength) is studied. It is explained as an effect of atomic characteristics, such as the nuclear amplitudes in some vibrational modes as well as the atomic polar and axial tensors, being to a high degree determined by the local topology of the atomic configuration. They reflect the local physics of the electron motions that generate the chemical bonds rather than the overall shape of the molecule.     

Selective Si−C(sp3) Bond Cleavage in (Aminomethyl)silanes by Carbanionic Nucleophiles and Its Stereochemical Course

Selective cleavage of a silicon–carbon bond in tetraorganosilanes is still a great challenge. A new type of Si−C(sp³) bond cleavage in bench-stable (aminomethyl)silanes with common organolithium reagents as nucleophiles has now been identified. Suitable leaving groups are benzyl, allyl, and phenylthiomethyl groups. A β-donor function and polar solvents are essential for the reaction. Simple switching between α-deprotonation and substitution is possible through slight modifications of the reaction conditions. The stereochemical course of the reaction was elucidated by using a silicon-chiral benzylsilane. The new transformation proceeds stereospecifically with inversion of configuration and can be used for the targeted synthesis of enantiomerically pure tetraorganosilanes, which are otherwise difficult to access. Quantum chemical calculations provided insight into the mechanism of the new substitution.     

Structure and spectroscopic properties of 2,4-dichloro-1-diethylamino-3, 5-diphenyl-1,3-pentadien-5-one,the product of the unusual reaction of triethylamine with (dibenzoylmethanato)antimony tetrachloride

The crystal and molecular structures of the title compound have been established by the X-ray diffraction method. The molecule has a bent configuration with a dihedral angle between the double bond planes of 43.2°. The double bonds are localized and have lengths of 1.351(6) and 1.355(6) Å. However vibrational and electronic spectroscopy indicate that the conjugation in the butadiene fragment is retained; this fragment is a conductor of the direct polar conjugation effect between the donor diethylamino group and the acceptor carbonyl group.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 267–269, February, 1994.     

C–H⋯O hydrogen bond in chloroform–triformylmethane complex: Blue-shifted or red-shifted?

B3LYP/6-311+G** level of theory is used to investigate the C-H...O hydrogen bond formed by chloroform and two conformers of triformylmethane (TFM), i.e. cis-TFM (concerned with C1 configuration) and trans-TFM (concerned with C2 and C3 configurations). Polarized continuum model (PCM) is used to study the solvent (chloroform) effect on this hydrogen bond. The C3 configuration is more stable than the C1 configuration whether the absolute energy or the stabilization energy is concerned. For the C1 and C2 configurations this hydrogen bond is of blue-shifted type both in gas phase and in chloroform solution. For the C3 configuration this hydrogen bond is of red-shifted type in gas phase but turns into blue-shifted type in chloroform solution instead. It's inappropriate to simply designate this hydrogen bond as blue-shifted type or red-shifted type.     

FCl:PCX complexes: old and new types of halogen bonds

MP2/aug'-cc-pVTZ calculations have been performed to investigate the halogen-bonded complexes FCl:PCX, for X = NC, CN, F, H, CCH, CCF, CH(3), Li, and Na. Although stable complexes with a F-Cl···P halogen bond exist that form through the lone pair at P (configuration I), except for FCl:PCCN, the more stable complexes are those in which FCl interacts with the C≡P triple bond through a perturbed π system (configuration II). In complexes I, the nature of the halogen bond changes from traditional to chlorine-shared and the interaction energies increase, as the electron-donating ability of X increases. The anionic complex FCl:PC(-) has a chlorine-transferred halogen bond. SAPT analyses indicate that configuration I complexes with traditional halogen bonds are stabilized primarily by the dispersion interaction. The electrostatic interaction is the most important for configuration I complexes with chlorine-shared halogen bonds and for configuration II complexes except for FCl:PCNa for which the induction term is most important. The F-Cl stretching frequency is red-shifted upon complexation. EOM-CCSD/(qzp,qz2p) spin-spin coupling constants have been obtained for all FCl:PCX complexes with configuration I. (1)J(F-Cl) decreases upon complexation. (2X)J(F-P) values are quadratically dependent upon the F-P distance and are very sensitive to halogen-bond type. (1X)J(Cl-P) tends to increase as the Cl-P distance decreases but then decreases dramatically in the chlorine-transferred complex FCl:PC(-) as the Cl-P interaction approaches that of a covalent Cl-P bond. Values of (1)J(F-Cl) for configuration II are reduced relative to configuration I, reflecting the longer F-Cl distances in II compared to those of the neutral complexes of I. Although the F-P and Cl-P distances in configuration II complexes are shorter than these distances in the corresponding configuration I complexes, (2X)J(F-P) and (1X)J(Cl-P) values are significantly reduced, indicating that coupling through the perturbed C-P π bond is less efficient. The nature of F-P coupling for configuration II is also significantly different, as evidenced by the relative importance of PSO, FC, and SD components.     

Electronic states and nature of bonding of the molecule PdSi by all electron ab initio HF-CI calculations and mass spectrometric equilibrium experiments

Six low-lying electronic states of the PdSi molecule have been investigated by performing all electron ab initio Hartree-Fock (HF) and configuration interaction (CI) calculations. The molecule is predicted to have a³∏ ground state and two low-lying excited states,³Σ^? and¹Σ⁺. The electronic structure of the PdSi molecule has been rationalized in a simple molecular orbital diagram. As part of the PdSi molecule the Pd atom essentially retains its (4d)¹⁰ ground term configuration. The chemical bond in the PdSi molecule has been interpreted in terms of donation and back-donation of charge. The bond is polar with charge transfer from the Pd to the Si atom. The dissociation energy of the PdSi molecule has been determined from the mass spectrometric equilibrium data in combination with the theoretical results asD ₀ ^o =257±12 kJ mol^?1.     

Covalent versus ionic bonding in alkalimetal fluoride oligomers

The most polar bond in chemistry is that between a fluorine and an alkalimetal atom. Inspired by our recent finding that other polar bonds (C--M and H--M) have important covalent contributions (i.e., stabilization due to bond overlap), we herein address the question if covalency is also essential in the F--M bond. Thus, we have theoretically studied the alkalimetal fluoride monomers, FM, and (distorted) cubic tetramers, (FM)4, with M=Li, Na, K, and Rb, using density functional theory at the BP86/TZ2P level. Our objective is to determine how the structure and thermochemistry (e.g., F--M bond lengths and strengths, oligomerization energies, etc.) of alkalimetal fluorides depend on the metal atom, and to understand the emerging trends in terms of quantitative Kohn-Sham molecular orbital theory. The analyses confirm the extreme polarity of the F--M bond (dipole moment, Voronoi deformation density and Hirshfeld atomic charges), and they reveal that bond overlap-derived stabilization (ca. -6, -6, and -2 kcal/mol) contributes only little to the bond strength (-136, -112, and -114 kcal/mol) and the trend therein along Li, Na, and K. According to this and other criteria, the F--M bond is not only strongly polar, but also has a truly ionic bonding mechanism. Interestingly, the polarity is reduced on tetramerization. For the lithium and sodium fluoride tetramers, the F4 tetrahedron is larger than and surrounds the M4 cluster (i.e., F--F>M--M). But in the potassium and rubidium fluoride tetramers, the F4 tetrahedron is smaller than and inside the M4 cluster (i.e., F--F相似文献   

THE CORRELATION EFFECT ON THE CHAIN MOTION CONTRIBUTION TO IONIC TRANSPORT IN POLYMER ELECTROLYTES

The ionic transport process in polymer electrolytes (such as polyethylene oxide) wassimulated numerically on a two dimensional square lattice where charge carriers areaccommodated by the lattice sites connected randomly with available bonds to represent theamorphous chain configuration. Following the dynamic bond percolation theory(DBPT),the chainmotion contribution to the ionic conduction was incorporated via periodical renewal of the randombond configuration. To check and extend the prediction made by DBPT employing global abruptbond renewal,spatial correlation of the bond reassignment was introduced to the system by: 1)regional bond renewal and 2) organized bond motion. It is found that the difference between thediffusivities simulated involving regional bond renewal and those of DBPT becomes negligiblewhen the bond renewal rate approaches the carrier hopping rate.     

Surface and fluorescence properties of a novel fluorescent surfactant

A novel kind of fluorescent surfactant having 7-hydroxylcoumarin group in the long alkyl chain was synthesized. The critical micelle concentration (CMC), surface tension (γ_cmc) at CMC and absorption, fluorescence properties of this product were determined. From the variations of fluorescence spectra in different solvents, it is observed that the polarity and dielectric constant of the solvents play important roles in the maximum fluorescence intensity and wavelength. Moreover, the surprised exhibition of two fluorescence bands in neutral and alkaline solutions has been attributed to the superexciplex formation of the product molecules. Also, the lower product concentration measuring the fluorescence properties as well as the supposed configuration of hydrogen bond of the product indicate that the larger aggregations cannot exist in alkaline solutions. The superexciplex is a possibility with two or more polar excited molecules together to form an excited state association.     

Methandiide as a Non‐Innocent Ligand in Carbene Complexes: From the Electronic Structure to Bond Activation Reactions and Cooperative Catalysis

The synthesis of a ruthenium carbene complex based on a sulfonyl‐substituted methandiide and its application in bond activation reactions and cooperative catalysis is reported. In the complex, the metal–carbon interaction can be tuned between a Ru?C single bond with additional electrostatic interactions and a Ru?C double bond, thus allowing the control of the stability and reactivity of the complex. Hence, activation of polar and non‐polar bonds (O?H, H?H) as well as dehydrogenation reactions become possible. In these reactions the carbene acts as a non‐innocent ligand supporting the bond activation as nucleophilic center in the 1,2‐addition across the metal–carbon double bond. This metal–ligand cooperativity can be applied in the catalytic transfer hydrogenation for the reduction of ketones. This concept opens new ways for the application of carbene complexes in catalysis.     

Conformational properties of glucosyl-thioglucosides and their S-oxides in solution

A stereochemical study of a series of alkyl glucosyl-β-(1→6)-thioglucosides and their S-oxides by means of nuclear magnetic resonance and circular dichroism revealed that the populations around the thioglucosidic bond (ring I) as well as those of the interglycosidic linkage ω depend on the aglycone, the solvent and, in the S-oxides, on the absolute configuration of the sulfur atom. The results for the thio-disaccharides showed the strong influence of the solvent polarity on the conformational preferences of the interglycosidic bond. In polar solvents, the magnitudes of the rotamer populations, P_gg and P_gt, remained practically constant through the series, while in non-polar solvents a clear predominance of gt conformation was observed as well as the influence of the aglycone on the conformational equilibrium. The results for both (S_S)- and (R_S)-alkyl thiogentiobiosyl S-oxide series showed a clear predominance of the gt rotamer, P_gt always having a higher magnitude in the latter series than in the former. Both series exhibited linear correlations between interglycosidic P_gg and P_gt and Taft’s steric parameter (E_S) for the alkyl group attached to the sulfinyl group, especially in non-polar solvents. The stereochemical study around the C1–S bond established that the flexibility around this linkage depends on aglycone size, solvent polarity, and the absolute configuration of the sulfur, derivatives of the S_S series showing higher flexibility in both polar and non-polar media. The conformational properties of these compounds in solution are explained in terms of stereoelectronic, steric, and solvent effects.     

金属串配合物[Cr3(dpa)4LL'](dpa=dipyridylamide; L,L'=Cl,BF4, CCPh)的Cr-Cr成键特性

采用密度泛函理论UBP86方法计算了Cr₃(dpa)₄Cl₂ (1)、Cr₃(dpa)₄(BF₄)₂ (2)、Cr₃(dpa)₄Cl(BF₄) (3)、Cr₃(dpa)₄(CCPh)₂ (4)和Cr₃(dpa)₄Cl(CCPh) (5)金属串配合物的结构, 并对配合物的构型、Cr—Cr键的本质以及轴向配体对Cr—Cr键的影响进行了研究. 结果表明: (1) Cr—Cr平均键长较长的配合物趋于形成对称构型, 较短时趋于形成非对称构型. 最稳定的五重态的Cr—Cr平均键长最长, 故优化时趋于形成对称构型; 七重态的Cr—Cr平均键长最短, 趋于形成非对称构型; (2) 五重态的Cr₃⁶⁺金属链均存在三中心三电子σ键, 含弱σ给电子轴向配体BF₄^-的2和3的Cr—Cr短键还具有弱的π相互作用. 七重态下, 对称构型的4中仅有三中心三电子σ键, 而非对称构型的1-3、5的Cr—Cr短键为三重键, 非对称构型仍具有Cr₃⁶⁺链的σ离域作用, 仍具有分子导线的潜在应用; (3) 轴向配体L与Cr的作用主要表现为n_L→4_sCr或n_L→3_dz²Cr离域, 较强的σ给电子配体CCPh^-还存在σ_C—C→4_sCr离域. Cr与L的结合强度为2＜3＜1＜5＜4, CCPh^-与Cr的结合最强, 使Cr—Cr键减弱、Cr—Cr距离增长, 故4的各自旋重态均为对称构型.     

Structure, thermochemistry, and conformational analysis of peroxides ROOR and hydroperoxides ROOH (R = Me, But, CF3)

The equilibrium structures, total energies, and harmonic frequencies of peroxides ROOR and ROOH (R = Me, Bu^t, CF₃) were calculated using the perturbation theory (MP4//MP2 method) and density functional approach (B3LYP) in the 6-31G(d,p) basis set. The conformational flexibility of peroxides under rotation about the O-O bond was investigated. It was found that the stable conformation of a peroxide molecule is determined by superposition of the destabilizing effects (repulsion between the lone electron pairs, steric hindrances) and the interaction of the nonbonding orbitals of oxygen atoms with the antibonding orbitals of the adjacent polar bonds. The latter effect stabilizes the nonplanar structure of the peroxide molecule. The role of orbital interactions in manifestation of the d-effect (distortion of the tetrahedral configuration of the X₃CO fragment of peroxide molecule) was revealed. The vibrational spectra of peroxides were calculated and compared with the experimental data. The potential energy distribution over normal vibrations was analyzed. The enthalpies of formation and the bond strengths in the molecules of compounds examined were calculated in the framework of the isodesmic reaction approach.     

Peptidomimetics with tunable tertiary amide bond containing substituted β-proline and β-homoproline

Tunable cis/trans prolyl amide bond configuration in substituted β-proline (β-Pro) and β-homoproline (β-Hpro) homodimers was explored, based on position and nature of the substituent. Tertiary amide bond in β-proline (β^2,3-substituted) dimers show distinct trans configuration and β-homoproline (β³-substituted) dimers preferably exhibited cis configuration.     

The role of polar, lamdba (Λ)-shaped building units in noncentrosymmetric inorganic structures

A methodology for the design of polar, inorganic structures is demonstrated here with the packing of lambda (Λ)-shaped basic building units (BBUs). Noncentrosymmetric (NCS) solids with interesting physical properties can be created with BBUs that lack an inversion center and are likely to pack into a polar configuration; previous methods to construct these solids have used NCS octahedra as BBUs. Using this methodology to synthesize NCS solids, one must increase the coordination of the NCS octahedra with maintenance of the noncentrosymmetry of the bulk. The first step in this progression from an NCS octahedron to an inorganic NCS solid is the formation of a bimetallic BBU. This step is exemplified with the compound CuVOF(4)(H(2)O)(7): this compound, presented here, crystallizes in an NCS structure with ordered, isolated [Cu(H(2)O)(5)](2+) cations and [VOF(4)(H(2)O)](2-) anions into Λ-shaped, bimetallic BBUs to form CuVOF(4)(H(2)O)(6)·H(2)O, owing to the Jahn-Teller distortion of Cu(2+). Conversely, the centrosymmetric heterotypes with the same formula MVOF(4)(H(2)O)(7) (M(II) = Co, Ni, and Zn) exhibit ordered, isolated [VOF(4)(H(2)O)](2-) and [M(H(2)O)(6)](2+) ionic species in a hydrogen bond network. CuVOF(4)(H(2)O)(7) exhibits a net polar moment while the heterotypes do not; this demonstrates that Λ-shaped BBUs give a greater probability for and, in this case, lead to NCS structures.     

Red-, blue-, or no-shift in hydrogen bonds: a unified explanation

We provide a simple explanation for X-H bond contraction and the associated blue shift and decrease of intensity in IR spectrum of the so-called improper hydrogen bonds. This explanation organizes hydrogen bonds (HBs) with a seemingly random relationship between the X-H bond length (and IR frequency and its intensity) to its interaction energy. The factors which affect the X-H bond in all X-H...Y HBs can be divided into two parts: (a) The electron affinity of X causes a net gain of electron density at the X-H bond region in the presence of Y and encourages an X-H bond contraction. (b) The well understood attractive interaction between the positive H and electron rich Y forces an X-H bond elongation. For electron rich, highly polar X-H bonds (proper HB donors) the latter almost always dominates and results in X-H bond elongation, whereas for less polar, electron poor X-H bonds (pro-improper HB donors) the effect of the former is noticeable if Y is not a very strong HB acceptor. Although both the above factors increase with increasing HB acceptor ability of Y, the shortening effect dominates over a range of Ys for suitable pro-improper X-Hs resulting in a surprising trend of decreasing X-H bond length with increasing HB acceptor ability. The observed frequency and intensity variations follow naturally. The possibility of HBs which do not show any IR frequency change in the X-H stretching mode also directly follows from this explanation.     

Development of surface-SFED models for polar solvents

We developed surface grid-based solvation free energy density (Surface-SFED) models for 36 commonly used polar solvents. The parametrization was performed with a large and diverse set of experimental solvation free energies mainly consisting of combinations of polar solvent and multipolar solute. Therefore, the contribution of hydrogen bonds was dominant in the model. In order to increase the accuracy of the model, an elaborate version of a previous hydrogen bond acidity and basicity prediction model was introduced. We present two parametrizations for use with experimentally determined (Surface-SFED/HB(exp)) and empirical (Surface-SFED/HB(cal)) hydrogen bond acidity and basicity values. Our computational results agreed well with experimental results, and inaccuracy of empirical hydrogen bond acidity and basicity values was the main source of error in Surface-SFED/HB(cal). The mean absolute errors of Surface-SFED/HB(exp) and Surface-SFED/HB(cal) were 0.49 and 0.54 kcal/mol, respectively.     

Ethynylogization of a coarctate fragmentation

Coarctate reactions form a separate class of elementary closed-shell processes in addition to polar and pericyclic reactions. Hence, they also follow a different homology principle. Whereas vinylogous polar and pericyclic reactions differ in the length of the reacting system by a double bond, coarctate reactions can be homologized (ethynylogized) by extending a known system by a triple bond. The prediction, which is based on theoretical considerations, is confirmed experimentally by the fragmentation of cyclopropylethynyl nitrene to cyano acetylene and ethylene, a reaction that is "ethynyloguous" to the known fragmentation of cyclopropyl nitrene to ethylene and HCN.