Identifying Multiple Populations from Single‐Molecule Lifetime Distributions

A major advantage of single‐molecule methods over ensemble‐averaging techniques involves the ability to characterize heterogeneity through the identification of multiple molecular populations. It can be challenging, however, to determine absolute values of dynamic parameters (and to relate these values to those determined from a conventional method) because characteristic timescales of various populations may vary over many orders of magnitude, and under a given set of experimental conditions instrumental sensitivity to various populations may be unequal. Using data obtained from the single‐molecule tracking microscopy of fibrinogen protein adsorption and desorption, it is shown that by performing a combined analysis of molecular trajectories obtained using a range of acquisition times, it is possible to extract quantitative absolute values of multiple population fractions and residence times (with well‐defined uncertainties), even when these values span many orders of magnitude. In particular, as many as six distinct populations are rigorously identified, exhibiting characteristic timescales that vary over nearly three orders of magnitude with population fractions as small as one part in a thousand. This approach will lead to better comparability between single‐molecule experiments and may be useful in connecting single‐molecule to ensemble‐averaged observations.     

Stable Single‐Molecule Lines of Terrylene in Polycrystalline para‐Dichlorobenzene at 1.5 K

The spectroscopic properties of single terrylene (Tr) molecules are studied in a polycrystalline matrix of para‐dichlorobenzene (p‐DCB) at 1.5 K. Samples grown in a glass capillary show a very strong site at 597 nm, which is redshifted by more than 700 cm^?1 from the observed transition energy for Tr in p‐DCB prepared as a film on a coverslip (572 nm). Each of these two sites is characterized by measuring their single‐molecule spectroscopic parameters at 1.5 K. Lifetime‐limited linewidths of 45±5 MHz are found for both sites. Fluorescence detection rates reach 8×10⁴ count s^?1 at saturation. The spectral trails of the majority of single molecules show no spectral jumps, indicating an absence of interacting two‐level systems; however, the small distribution of linewidths may indicate weak interactions with low‐frequency modes. Frequency jumps are observed for 10 % of the molecules. The complete emission spectra from two different single molecules at the center of each of the two sites is presented. Debye–Waller factors of α_DW=0.33±0.05 for the normal site (572 nm) and α_DW=0.30±0.05 for the red site (597 nm) are reported. This new host–guest system provides a quick and easy way to obtain lifetime‐limited single‐molecule lines.     

Density functional study of the conformers of Co4‐based single‐molecule magnet

We present a detailed density functional theory‐based investigation on the geometry and electronic structure of the [Co₄(hmp)₄(MeOH)₄Cl₄] molecule. It is experimentally found to behave as a molecular magnet. The all‐electron electronic structure calculations and geometry optimization of the 88‐atom molecule were carried out within the generalized gradient approximation to the exchange correlation energy. We also study the electronic structures and geometries of a few low‐lying conformers of this molecule. It is found that the magnetic anisotropy energy is highly sensitive to the geometric structure of the molecule. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 93: 324–331, 2003     

Binding of Ricinus communis agglutinin to a galactose-carrying polymer brush on a colloidal gold monolayer

A polymer with many pendent galactose residues was prepared by atom-transfer radical polymerization (ATRP) of galactose-carrying vinyl monomer, 2-lactobionamidoethyl methacrylate (LAMA), with a disulfide-carrying ATRP initiator, 2-(2'-bromoisobutyroyl)ethyl disulfide (DT-Br). The galactose-carrying polymer obtained (DT-PLAMA) was accumulated as a polymer brush via Au-S bond on a colloidal gold monolayer deposited on a cover glass. For comparison, a disulfide which carried one galactose residue at both ends (2-lactobionamidoethyl disulfide, Cys-Lac) was accumulated as a self-assembled monolayer (SAM) on the colloidal gold monolayer, too. The association and dissociation processes of galactose residues on the colloidal gold with a lectin, Ricinus communis agglutinin (RCA(120)), were observed by the increase and decrease in absorbance at 550nm corresponding to localized surface plasmon resonance (LSPR) phenomena. The Cys-Lac SAM-carrying glass chip showed a strong non-specific adsorption of the lectin, whereas the DT-PLAMA brush-carrying one reversibly associated with the lectin, indicating reusability of the latter device. The apparent association constant of the lectin with the galactose residues in the DT-PLAMA brush was much larger than the association constant for free galactose, and the detection limit of RCA(120) by the glycopolymer brush-modified device was satisfactorily low. Furthermore, a microscopic observation clearly indicated that the DT-PLAMA brush could reversibly associate with a HepG2 cell having galactose receptors, though these processes could not be observed spectrophotometrically due to a gigantic size of the cell.     

Probing the polymer anomalous dynamics at solid/liquid interfaces at the single-molecule level

A goal across multiple scientific fields (e.g. separations, polymer processing, and biomaterials) is to understand polymer dynamics at solid/liquid interfaces. In the last two decades, rapid developments in single-molecule techniques have revolutionized our ability to directly observe molecular behaviors with ultra-high spatial/temporal resolution and to decouple the elementary processes that were often veiled in ensemble experiments. This review provided an overview of principle and realization of two single-molecule fluorescence techniques that were often used to study the interfacial dynamics. In addition, this review updated recent progress in the discovery and understanding of dynamical anomalies of polymers at solid/liquid interfaces using these single-molecule techniques, emphasizing important elementary processes of diffusion, adsorption, and desorption.     

Misfolding of Luciferase at the Single‐Molecule Level

The folding of complex proteins can be dramatically affected by misfolding transitions. Directly observing misfolding and distinguishing it from aggregation is challenging. Experiments with optical tweezers revealed transitions between the folded states of a single protein in the absence of mechanical tension. Nonfolded chains of the multidomain protein luciferase folded within seconds to different partially folded states, one of which was stable over several minutes and was more resistant to forced unfolding than other partially folded states. Luciferase monomers can thus adopt a stable misfolded state and can do so without interacting with aggregation partners. This result supports the notion that luciferase misfolding is the cause of the low refolding yields and aggregation observed with this protein. This approach could be used to study misfolding transitions in other large proteins, as well as the factors that affect misfolding.     

Iron Polyoxometalate Single‐Molecule Magnets

Iron sandwich on a tungstate bun : Two new polyoxotungstates with paramagnetic iron(III) heteroatoms (see structure, W blue, Fe yellow, O red) possess S=15/2 and S=5 ground states. Both compounds are single‐molecule magnets, and the hexairon species shows large hysteresis (see picture) and quantum tunneling effects at low temperature. Electrochemical studies indicate that these species are stable in solution for a wide range of pH values.

     

水-油界面上聚合物单链的动态性质及疏水相互作用

通过荧光关联光谱研究了不相容的水-油界面上聚乙二醇单链的横向扩散运动,系统地研究了PEO单链的扩散运动速率随着水溶液中电解质NaCl浓度的升高的变化规律,发现随着盐浓度的升高,扩散系数的变化主要取决于油相的黏度,说明NaCl浓度的升高增强了聚合物链与烷烃油相的疏水相互作用.     

Single‐Molecule Study of a Plasmon‐Induced Reaction for a Strongly Chemisorbed Molecule

Chemical reactions induced by plasmons achieve effective solar‐to‐chemical energy conversion. However, the mechanism of these reactions, which generate a strong electric field, hot carriers, and heat through the excitation and decay processes, is still controversial. In addition, it is not fully understood which factor governs the mechanism. To obtain mechanistic knowledge, we investigated the plasmon‐induced dissociation of a single‐molecule strongly chemisorbed on a metal surface, two O₂ species chemisorbed on Ag(110) with different orientations and electronic structures, using a scanning tunneling microscope (STM) combined with light irradiation at 5 K. A combination of quantitative analysis by the STM and density functional theory calculations revealed that the hot carriers are transferred to the antibonding (π*) orbitals of O₂ strongly hybridized with the metal states and that the dominant pathway and reaction yield are determined by the electronic structures formed by the molecule–metal chemical interaction.     

Single‐Molecule Methods to Study Membrane Receptor Oligomerization

Membrane receptors control fundamental cellular processes. Binding of a specific ligand to a receptor initiates communication through the membrane and activation of signaling cascades. This activation process often leads to a spatial rearrangement of receptors in the membrane at the molecular level. Single‐molecule techniques contributed significantly to the understanding of receptor organization and rearrangement in membranes. Here, we review four prominent single‐molecule techniques that have been applied to membrane receptors, namely, stepwise photobleaching, Förster resonance energy transfer, sub‐diffraction localization microscopy and co‐tracking. We discuss the requirements, benefits and limitations of each technique, discuss target labeling, present a selection of applications and results and compare the different methodologies.     

Tuning Single‐Molecule Dynamics in Functionalized Mesoporous Silica

Diffusion of single molecules of a substituted terrylene diimide dye in functionalized mesoporous silica films was monitored by single‐molecule fluorescence microscopy. By varying the chemical nature and density of the functional groups, the diffusion dynamics of the dye molecules can be controlled precisely. The picture shows a sketch of a dye molecule in a pore, diffusion data for different phenyl functionalization densities, and the trajectory of one molecule in a cyanopropyl‐functionalized film.

     

Orientation‐Controlled Single‐Molecule Junctions

The conductivity of a single aromatic ring, perpendicular to its plane, is determined using a new strategy under ambient conditions and at room temperature by a combination of molecular assembly, scanning tunneling microscopy (STM) imaging, and STM break junction (STM‐BJ) techniques. The construction of such molecular junctions exploits the formation of highly ordered structures of flat‐oriented mesitylene molecules on Au(111) to enable direct tip/π contacts, a result that is not possible by conventional methods. The measured conductance of Au/π/Au junction is about 0.1 G_o , two orders of magnitude higher than the conductance of phenyl rings connected to the electrodes by standard anchoring groups. Our experiments suggest that long‐range ordered structures, which hold the aromatic ring in place and parallel to the surface, are essential to increase probability of the formation of orientation‐controlled molecular junctions.     

Investigating the Photostability of Quantum Dots at the Single‐Molecule Level

Quantum dots (QDs) have shown great potential to provide spatial, temporal, and structural information for biological systems. However, blinking, photobleaching, and spectral blueshift are adverse effects on their practical applications in biomedical research. An investigation of the effects of six reducing agents including cysteine (Cys), 1,4‐dithiothreitol (DTT), ethyl gallate (EG), L ‐glutathione (GSH), mercaptoacetic acid (MAA), and thiourea (TU) on the photostability of single QDs was studied. Our experiments demonstrate that both DTT and EG effectively inhibit blinking, photobleaching, and spectral blueshift. GSH molecules block blinking and photobleaching of QDs. The other reagents, Cys, MAA, and TU, only have the ability to counteract blinking. Possible explanations are given on the basis of research evidence. The results suggest possibilities for significant improvements in QDs for biological applications by adjusting the environmental conditions.     

Slow Magnetic Relaxation from Hard‐Axis Metal Ions in Tetranuclear Single‐Molecule Magnets

We report the synthesis of the novel heterometallic complex [Fe₃Cr(L)₂(dpm)₆]?Et₂O ( Fe₃CrPh ) (Hdpm=dipivaloylmethane, H₃L=2‐hydroxymethyl‐2‐phenylpropane‐1,3‐diol), obtained by replacing the central iron(III) atom by a chromium(III) ion in an Fe₄ propeller‐like single‐molecule magnet (SMM). Structural and analytical data, high‐frequency EPR (HF‐EPR) and magnetic studies indicate that the compound is a solid solution of chromium‐centred Fe₃Cr (S=6) and Fe₄ (S=5) species in an 84:16 ratio. Although SMM behaviour is retained, the |D| parameter is considerably reduced as compared with the corresponding tetra‐iron(III) propeller (D=?0.179 vs. ?0.418 cm^?1), and results in a lower energy barrier for magnetisation reversal (U_eff/k_B=7.0 vs. 15.6 K). The origin of magnetic anisotropy in Fe₃CrPh has been fully elucidated by preparing its Cr‐ and Fe‐doped Ga₄ analogues, which contain chromium(III) in the central position (c) and iron(III) in two magnetically distinct peripheral sites (p1 and p2). According to HF‐EPR spectra, the Cr and Fe dopants have hard‐axis anisotropies with D_c=0.470(5) cm^?1, E_c=0.029(1) cm^?1, D_p1=0.710(5) cm^?1, E_p1=0.077(3) cm^?1, D_p2=0.602(5) cm^?1, and E_p2=0.101(3) cm^?1. Inspection of projection coefficients shows that contributions from dipolar interactions and from the central chromium(III) ion cancel out almost exactly. As a consequence, the easy‐axis anisotropy of Fe₃CrPh is entirely due to the peripheral, hard‐axis‐type iron(III) ions, the anisotropy tensors of which are necessarily orthogonal to the threefold molecular axis. A similar contribution from peripheral ions is expected to rule the magnetic anisotropy in the tetra‐iron(III) complexes currently under investigation in the field of molecular spintronics.     

Variable Temperature Single‐Molecule Dynamics of MEH‐PPV

Herein, we continue our investigation of the single‐molecule spectroscopy of the conjugated polymer poly[2‐methoxy,5‐(2′‐ethylhexyloxy)‐p‐phenylene‐vinylene] (MEH‐PPV) at cryogenic temperatures. First, the low temperature microsecond dynamics of single MEH‐PPV conjugated polymer molecules are compared to the dynamics at room temperature revealing no detectible temperature dependence. The lack of temperature dependence is consistent with the previous assignment of the dynamics to a mechanism that involves intersystem crossing and triplet–triplet annihilation. Second, the fluorescence spectra of single MEH‐PPV molecules at low temperature are studied as a function of excitation wavelength (i.e. 488, 543, and 568 nm). These results exhibit nearly identical fluorescence spectra for different excitation wavelengths. This strongly suggests that electronic energy transfer occurs efficiently to a small number of low‐energy sites in the multichromophoric MEH‐PPV chains.