Potential and Limitations of 2D <Superscript>1</Superscript>H–<Superscript>1</Superscript>H Spin-Exchange CRAMPS Experiments to Characterize Structures of Organic Solids

Summary.  A brief overview of our recent results concerning the application of 2D CRAMPS experiments to investigate a wide range of materials is presented. The abilities of the 2D ¹H–¹H spin-exchange technique to characterize the structure of organic solids as well as the limitations resulting from segmental mobility and from undesired coherence transfer are discussed. Basic principles of ¹H NMR line-narrowing and procedures for analysis of the spin-exchange process are introduced. We focused to the qualitative and quantitative analysis of complex spin-exchange process leading to the determination of domain sizes and morphology in heterogeneous multicomponent systems as well as the characterization of clustering of surface hydroxyl groups in polysiloxane networks. Particular attention is devoted to the determination of the ¹H–¹H interatomic distances in the presence of local molecular motion. Finally we discuss limitations of the ¹³C–¹³C correlation mediated by ¹H–¹H spin exchange to obtain structural constraints. The application of Lee-Goldburg cross-polarization to suppress undesired coherence transfer is proposed. Corresponding author. E-mail: brus@imc.cas.cz Received May 28, 2002; accepted (revised) July 1, 2002     

High-Resolution <Superscript>1</Superscript>H and <Superscript>13</Superscript>C NMR of Glycyrrhizic Acid and Its Esters

Resonances for protons and C atoms in the ¹H and ¹³C NMR spectra of glycyrrhizic acid and its esters were assigned using high-resolution ¹H (600 MHz) and ¹³C (150 MHz) NMR methods. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 4, pp. 347–350, July–August, 2005.     

PMR and <Superscript>13</Superscript>C NMR spectra of biologically active compounds. XIII.* Structure and stereochemistry of a new phenylpropanoid glycoside isolated from <Emphasis Type="Italic">Onopordum acanthium</Emphasis> seeds

The structure of a new compound was determined using PMR and ¹³C NMR spectroscopy (HHCOSY, HSBC, HMBC, ROESY) as 2-[3′-methoxy,4-O-β-D-galactopyranos-1-yl)benzyl]-3-(3″,4″-dimethoxybenzyl)-4hydroxybutyric acid, which was isolated for the first time from seeds of Scotch thistle Onopordum acanthium L. *For No. XII, see [1]. Translated from Khimiya Prirodnykh Soedinenii, No. 1, pp. 53–55, January–February, 2009.     

[1-B<Subscript>10</Subscript>H<Subscript>9</Subscript>N<Subscript>2</Subscript>]<Superscript>−</Superscript> and [1-CB<Subscript>9</Subscript>H<Subscript>10</Subscript>]<Superscript>−</Superscript> anions: an attempt of quantum chemical calculations

Comparative quantum chemical calculations of structural parameters, chemical shifts of ¹¹B NMR spectra, and atomic charges in 10-vertex boron hydride anions [1-CB₉H₁₀]⁻ and [1-B₁₀H₉N₂]⁻ were performed using the restricted Hartree-Fock method with the 6-31++G(D,P) basis set. Dedicated to Academician G. A. Abakumov on the occasion of his 70th birthday. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1853–1855, September, 2007.     

Extraction of metal ions (Fe<Superscript>3+</Superscript>, Co<Superscript>2+</Superscript>, Ni<Superscript>2+</Superscript>, Cu<Superscript>2+</Superscript> and Zn<Superscript>2+</Superscript>) using immobilized-polysiloxane iminobis(n-2-aminophenylacetamide) ligand system

A new insoluble solid functionalized ligand system bearing chelating ligand group of the general formula P-(CH₂)₃-N[CH₂CONH(C₆H₄)NH₂]₂, where P represents [Si–O] _n polysiloxane network, was prepared by the reaction of the immobilized diethyliminodiacetate polysiloxane ligand system, P-(CH₂)₃N(CH₂CO₂Et)₂ with 1,2-diaminobenzene in toluene. ¹³C CP-MAS NMR, XPS and FTIR results showed that most ethylacetate groups (–COOEt) were converted into the amide groups (–N–C=O). The new functionalized ligand system exhibits high capacity for extraction and removal of the metal ions (Fe³⁺, Co²⁺, Ni²⁺, Cu²⁺ and Zn²⁺) with efficiency of 95–97% after recovery from its primary metal complexes. This functionalized ligand system formed 1:1 metal to ligand complexes.     

Quantitative <Superscript>2</Superscript>H NMR spectroscopy

The selectivity of deuterium distribution between the nonequivalent positions in 3-carene (1), 4-α-acetyl-2-carene (2), and 4-(1-hydroxyethyl)-2-carene (3) has been measured by ²H-{¹H} NMR spectroscopy at the natural abundance of deuterium. These “H/D-isotope portraits” were shown to be typical of terpenes and terpenoids produced in plants via the biosynthetic DXP pathway. The mechanism of acylation of 1 was studied by the density functional theory method (PBE functional, TZ2p basis set). The six-membered ring in compound 1 is planar. However, the endo attack of electrophiles on this ring is more favorable both kinetically and thermodynamically. It was shown both experimentally and theoretically that the elimination of a hydrogen atom in the second reaction step proceeds stereoselectively at the C(2) atom from the anti position with respect to the three-membered ring and occurs with pronounced nucleophilic assistance from the carbonyl group. For Part 2, see Ref. 1. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1657–1664, August, 2008.     

<Superscript>1</Superscript>H NMR spectra of water contained in solutions of poly(<Emphasis Type="Italic">N</Emphasis>-vinylpyrrolidone) and its modification products in CDCl<Subscript>3</Subscript>

¹H NMR spectra in CDCl₃ of poly(N-vinylpyrrolidone), epoxidized poly(N-vinyl-pyrrolidone), and products derived from the latter by modification with amino acids (glycine, β-alanine, γ-aminobutyric acid, and ε-aminocaproic acid) were examined. The ¹H NMR spectra of the modified polymers contain signals for water protons due to different centers of water sorption. These signals differ in chemical shift and integral intensity and indicate a changed spatial packing of the polymer as the result of its modification. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 2377–2380, October, 2005.     

Vertical inventories and fluxes of <Superscript>210</Superscript>Pb, <Superscript>228</Superscript>Ra and <Superscript>226</Superscript>Ra at southern South China Sea and Malacca Straits

Inventories and fluxes of ²¹⁰Pb, ²²⁸Ra and ²²⁶Ra were determined in sediment cores collected at nine stations covering of the southern South China Sea and Malacca Straits with the thickness of water column between 42 and 83 m depth. The inventories of ²¹⁰Pb, ²²⁸Ra and ²²⁶Ra were calculated range from 0.15–2.55 Bq cm⁻², 0.05–0.40 Bq cm⁻² and 6.83–83.63 Bq cm⁻², meanwhile the fluxes ranged from 0.005–0.079 Bq cm⁻² yr⁻¹, 0.009–0.048 Bq cm⁻² yr⁻¹ and 0.003–0.037 Bq cm⁻² yr⁻¹, respectively. The results show that the highest inventories and fluxes for ²¹⁰Pb, ²²⁸Ra and ²²⁶Ra were found at station WC 01 and EC 05. Because there are additional sources of ²¹⁰Pb, ²²⁸Ra and ²²⁶Ra, where water transport will brings more dissolved isotopes, influence of the transportation and deposition of suspended particles, fast rate of regeneration and greater production of those radionuclides and others.     

Structure of lipid A from the marine gram-negative bacterium <Emphasis Type="Italic">Pseudoalteromonas nigrifaciens</Emphasis> IAM 13010<Superscript>T</Superscript>

The structure of lipid A from the marine γ-proteobacterium Pseudoalteromonas nigrifaciens IAM 13010^T that was prepared by hydrolysis of the corresponding lipopolysaccharide by acetic acid (1%) was determined by chemical analysis, ¹³C NMR spectroscopy, and MALDI/TOF and LSIMS mass spectrometry. It was shown that lipid A is a β-1,6-bonded disaccharide of glucosamine that is substituted by two phosphoric acids (in the C1 and C4′ positions), two (R)-3-hydroxyalkanoic (normal and branched) acids with ester bonding (at the C3 and C3′-positions), and (R)-3-hydroxydodecanoic and (R)-3-dodecanoyloxydodecanoic acids (both with amide bonding at C2′ and C2, respectively). It was hypothesized that this type of structure is typical of lipid A from bacteria of the genus Pseudoalteromonas in general. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 5, pp. 425–429, September–October, 2007.     

Combination of <Superscript>13</Superscript>C/<Superscript>113</Superscript>Cd NMR,potentiometry, and voltammetry in characterizing the interactions between Cd and two models of the main components of soil organic matter

This work allowed the characterization of the Cd-binding sites of two compounds taken as models for exudates, the main components of soil organic matter (SOM). The studied compounds were exopolysaccharides (EPS), specifically exudates of roots (polygalacturonic acid) and of soil bacteria (Phytagel). Potentiometric acid–base titrations were performed and fitting of the obtained results indicated the presence of two main classes of acidic sites, defined by their pK _a values, for both EPS but of a different nature when comparing the two compounds. The two studied exopolysaccharides presented different acidic/basic site ratios: 0.15 for Phytagel and 0.76 for polygalacturonic acid. Spectroscopic techniques (¹³C/¹¹³Cd NMR, FTIR) distinguished different Cd surroundings for each of the studied EPS, which is in agreement with the titration results. Furthermore, these analyses indicated the presence of –COOH and –OH groups in various proportions for each exopolysaccharide, which should be linked to their reactivity towards cadmium. Cadmium titrations (voltammetric measurements) also differentiated different binding sites for each compound and allowed the determination of the strength of the Cd-binding site of the EPS. Fitting of the results of such voltammetric measurements was performed using PROSECE (Programme d’Optimisation et de Speciation Chimique dans l’Environnement), a software coupling chemical speciation calculation and binding parameter optimization. The fitting, taking into account the Cd²⁺/H⁺ competition towards exopolysaccharides, confirmed the acid-base titrations and spectroscopic analyses by revealing two classes of binding sites: (i) one defined as a strong complexant regarding its Cd²⁺–EPS association (logK = 9–10.4) and with basic functionality regarding H⁺–EPS association (pK _a = 11.3–11.7), and (ii) one defined as a weak complexant (logK = 7.1–8.2) and with acidic functionality (pK _a = 3.7–4.0). Therefore the combination of spectroscopic analyses, voltammetry, and fitting allowed the precise characterization of the binding sites of the studied exopolysaccharides, mimicking the main SOM components. Furthermore, the binding parameters obtained by fitting can be used in biogeochemical models to better define the role of key SOM compounds like exudates of roots and of soil bacteria on trace metal transport or assimilation.     

Evaluation of <Superscript>137</Superscript>Cs soil-to-plant transfer: Natural and model experiments

Soil and meadow grass were sampled in the whole territory of Lithuania in 1992–2000. For the laboratory experiment, spring wheat Triticum aestivum L. “Nandu” was used because its root system type is similar to that of perennial meadow grass. The ¹³⁷Cs soil-to-plant transfer factor of spring wheat was determined and the results were compared with the predicted values using a compartment model of soil-to-plant transfer and with the results of the field experiment. The results of comparing the measured and calculated transfer factor using the model show rather good coincidence, however, the calculated values were overestimated. The reason for overestimation can be that the uptake rate is not influenced only by the soil-to-plant transfer. The results of the model experiment (from 0.005 m²·kg⁻¹ to 0.053 m²·kg⁻¹) are close to those of the field measurements for grass (from 0.013 m²·kg⁻¹ in 1992–1995 to 0.10 m²·kg⁻¹ in 1999–2000).     

A biomonitoring study: <Superscript>210</Superscript>Po and heavy metals in mussels

In various samples of Mytilus galloprovincialis, ²¹⁰Po was determined by alpha-spectrometry while Mn, Fe, Ni, Cu, Zn, Cd, Sn, Hg and Pb by energy dispersive, polarised X-ray fluorescence spectrometry (EDPXRF). The mussels of different sizes were taken from 7 sites in the central Adriatic Sea along the Marche coastal region during the four seasons of the year. ²¹⁰Po activity concentration ranged between 57 and 343 Bq·kg⁻¹ dry weight. The concentration ranges of heavy metals (μg·g⁻¹ dry weight) were as follows: Mn: 72.9–83.1; Fe: 45.1–754; Ni: 1.3–7.6; Cu: 17.9–156; Zn: 60.9–189; Cd: 0.6–1.0; Sn: 0.6–3.9; Hg always <0.5; Pb: 2.0–9.0. The data obtained depend upon the site and the period of the sampling and they are also compared with those obtained by other authors for the same organism in the Mediterranean and other Italian seas.     

Complete <Superscript>1</Superscript>H and <Superscript>13</Superscript>C NMR signal assignments and chemical shift calculations of four 1,2,4-oxadiazole-based light-emitting liquid crystals

In this article, we describe the complete ¹H and ¹³C NMR signal assignments of four 1,2,4-oxadiazoles possessing light-emitting liquid crystal properties. These results were obtained by using one- and two-dimensional NMR techniques as well as GIAO (PCM) calculations at B3LYP/6-311++G(d,p) level for compounds 1 and 2a–d. The computed values are in good agreement with the ones obtained experimentally. In addition, some previously unexplained thermotropic features of compounds 2a–d could be clarified with the help of the geometry optimization calculations carried out by us.     

Determination of the primary structure and carboxyl p<Emphasis Type="Italic">K</Emphasis><Subscript>A</Subscript>s of heparin-derived oligosaccharides by band-selective homonuclear-decoupled two-dimensional <Superscript>1</Superscript>H NMR

Determination of the structure of heparin-derived oligosaccharides by ¹H NMR is challenging because resonances for all but the anomeric protons cover less than 2 ppm. By taking advantage of increased dispersion of resonances for the anomeric H¹ protons at low pD and the superior resolution of band-selective, homonuclear-decoupled (BASHD) two-dimensional ¹H NMR, the primary structure of the heparin-derived octasaccharide ∆UA(2S)-[(1 → 4)-GlcNS(6S)-(1 → 4)-IdoA(2S)-]₃-(1 → 4)-GlcNS(6S) has been determined, where ∆UA(2S) is 2-O-sulfated ∆^4,5-unsaturated uronic acid, GlcNS(6S) is 6-O-sulfated, N-sulfated β-d-glucosamine and IdoA(2S) is 2-O-sulfated α-l-iduronic acid. The spectrum was assigned, and the sites of N- and O-sulfation and the conformation of each uronic acid residue were established, with chemical shift data obtained from BASHD-TOCSY spectra, while the sequence of the monosaccharide residues in the octasaccharide was determined from inter-residue NOEs in BASHD-NOESY spectra. Acid dissociation constants were determined for each carboxylic acid group of the octasaccharide, as well as for related tetra- and hexasaccharides, from chemical shift–pD titration curves. Chemical shift–pD titration curves were obtained for each carboxylic acid group from sub-spectra taken from BASHD-TOCSY spectra that were measured as a function of pD. The pK _As of the carboxylic acid groups of the ∆UA(2S) residues are less than those of the IdoA(2S) residues, and the pK _As of the carboxylic acid groups of the IdoA(2S) residues for a given oligosaccharide are similar in magnitude. Relative acidities of the carboxylic acid groups of each oligosaccharide were calculated from chemical shift data by a pH-independent method.     

Distribution of <Superscript>137</Superscript>Cs, <Superscript>40</Superscript>K, <Superscript>232</Superscript>Th and <Superscript>238</Superscript>U in coastal marine sediments of Margarita Island,Venezuela

This work presents the results of ¹³⁷Cs, ⁴⁰K, ²³²Th and ²³⁸U concentration (Bq kg⁻¹) values in coastal marine sediments collected from 38 sites along the coastline of the island of Margarita, Venezuela. The purpose was to determine baseline values for these radionuclides in surface marine sediments and to detect if there were any anomalously high concentration values. Only three of the 38 sediments analyzed had measurable values above the detection limit of 0.9 Bq kg⁻¹ for ¹³⁷Cs and the highest only being 1.4 Bq kg⁻¹. While, the concentration (Bq kg⁻¹) ranges for the primordial radionuclides, ⁴⁰K, ²³²Th and ²³⁸U were as follows: 12.2–211.7, <1.5–9.8 and <4.4–20.7, respectively. These concentration ranges for the primordial radionuclides can be considered as baseline values for surface marine sediments for areas that are considered not polluted by man or contaminated by nature. Finally, the concentration range of ¹³⁷Cs can also be employed as baseline values, which only seem to have been the result of the atmospheric testing of nuclear weapons in the past.     

Chemical Constituents of Brown Rice Grain (<Emphasis Type="Italic">Oryza sativa</Emphasis>)

One new compound 3,7,11,15,19-pentamethyl-9α,10α,11α,17α,18α-pentahydroxy-n-tetracosan-1-oxy-p-hydroxycaffeoate (oryzaterpenyl caffeoate) (1), together with three known fatty acids linoleic acid, stearic acid and myristic acid were isolated and identified from the rice grain of Oryza sativa. The structure of the new compound was elucidated by 1D and 2D NMR spectroscopic techniques (¹H-¹HCOSY, ¹H-¹³C HETCOR) aided by EI-MS, and IR spectra. __________ Published in Khimiya Prirodnykh Soedinenii, No. 6, pp. 535–537, November–December, 2005.     

Determination of galactosamine impurities in heparin samples by multivariate regression analysis of their <Superscript>1</Superscript>H NMR spectra

Heparin, a widely used anticoagulant primarily extracted from animal sources, contains varying amounts of galactosamine impurities. Currently, the United States Pharmacopeia (USP) monograph for heparin purity specifies that the weight percent of galactosamine (%Gal) may not exceed 1%. In the present study, multivariate regression (MVR) analysis of ¹H NMR spectral data obtained from heparin samples was employed to build quantitative models for the prediction of %Gal. MVR analysis was conducted using four separate methods: multiple linear regression, ridge regression, partial least squares regression, and support vector regression (SVR). Genetic algorithms and stepwise selection methods were applied for variable selection. In each case, two separate prediction models were constructed: a global model based on dataset A which contained the full range (0–10%) of galactosamine in the samples and a local model based on the subset dataset B for which the galactosamine level (0–2%) spanned the 1% USP limit. All four regression methods performed equally well for dataset A with low prediction errors under optimal conditions, whereas SVR was clearly superior among the four methods for dataset B. The results from this study show that ¹H NMR spectroscopy, already a USP requirement for the screening of contaminants in heparin, may offer utility as a rapid method for quantitative determination of %Gal in heparin samples when used in conjunction with MVR approaches.     

Ion-exchange selectivity of a network calixarene-containing polymer obtained by the template synthesis on Na<Superscript>+</Superscript>, K<Superscript>+</Superscript>, and Ba<Superscript>2+</Superscript> matrices

The ion-exchange equilibrium in network polymers obtained from cis-2,8,14,20-tetraphenyl-4,6,10,12,16,18,22,24-octahydroxycalix[4]arene by template synthesis on cations Na⁺, K⁺, and Ba²⁺ as matrices was studied. The selectivity coefficients of ion exchanges Ba²⁺-H⁺, Na⁺-H⁺, K⁺-H⁺, Na⁺-K⁺, and Na⁺-NH₄ ⁺ were determined. The template synthesis enhanced the affinity of the polymers to matrix-forming cations by 6–8 kJ mol⁻¹. __________ Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1919–1922, August, 2005.     

Ionic mobility in heptafluorozirconantes with a mixed cationic sublattice as probed by <Superscript>1</Superscript>H and <Superscript>19</Superscript>F NMR

The ionic mobility in heptafluorozirconates (NH₄)_2.7Rb_0.3ZrF₇ and (NH₄)_2.75Cs_0.25ZrF₇ has been studied by ¹H and ¹⁹F NMR in the temperature range 150–430 K. The types of ion motion were determined and their activation energies were estimated. A phase transition results in a modification in which diffusion in the ammonium sublattice and orientational disorder of ZrF₇³⁻ anions are observed. Owing to diffusion of ammonium ions, the compounds have relatively high ionic conductivity (σ ≥ 5 × 10⁻⁵ S/cm at 420 K).     

Hydridosilazanes hydrolysis-condensation reactions studied by <Superscript>1</Superscript>H and <Superscript>29</Superscript>Si liquid NMR spectroscopy

Hydridosilazane compounds containing Si–N and Si–H bonds can be used as precursors of SiO_x materials. The hydrolysis-condensation reactions of tetramethyldisilazane, as a polyhydridosilazane model compound, were investigated by ¹H and ²⁹Si liquid NMR spectroscopy. These reactions were carried out at room temperature for up to 120 min in presence of water. The identified products are short linear siloxane species (hydride terminated polydimethylsiloxanes M^HD_xM^H) and cyclosiloxanes. Silicon hydride persistence in the reactional mixture suggested that silazane group is more sensitive to hydrolysis reaction than silicon hydride group. Moreover, additional experiments evidenced that the low steric hindrance of the silicon hydride influences the silazane hydrolysis kinetic. Hence the presence of ammonia released during silazane hydrolysis reaction was demonstrated to be a catalyst of the silicon hydride hydrolysis reaction.