Transition levels of defect centers in ZnO by hybrid functionals and localized basis set approach

A hybrid density functional study based on a periodic approach with localized atomic orbital basis functions has been performed in order to compute the optical and thermodynamic transition levels between different charge states of defect impurities in bulk ZnO. The theoretical approach presented allows the accurate computation of transition levels starting from single particle Kohn-Sham eigenvalues. The results are compared to previous theoretical findings and with available experimental data for a variety of defects ranging from oxygen vacancies, zinc interstitials, and hydrogen and nitrogen impurities. We find that H and Zn impurities give rise to shallow levels; the oxygen vacancy is stable only in the neutral V(O) and doubly charged V(O) (2+) variants, while N-dopants act as deep acceptor levels.     

Kernel energy method: Basis functions and quantum methods

The kernel energy method (KEM) has been illustrated with peptides and has been shown to reduce the computational difficulty associated with obtaining ab initio quality quantum chemistry results for large biological compounds. In a recent paper, the method was illustrated by application to 15 different peptides, ranging in size from 4 to 19 amino acid residues, and was found to deliver accurate Hartree–Fock (HF) molecular energies within the model, using Slater‐type orbital (STO)‐3G basis functions. A question arises concerning whether the results obtained from the use of KEM are wholly dependent on the STO‐3G basis functions that were employed, because of their relative simplicity, in the first applications. In the present work, it is shown that the accuracy of KEM does not depend on a particular choice of basis functions. This is done by calculating the ground‐state energy of a representative peptide, ADPGV7B, containing seven amino acid residues, using seven different commonly employed basis function sets, ranging in size from small to medium to large. It is shown that the accuracy of the KEM does not vary in any systematic way with the size or mathematical completeness of the basis set used, and good accuracy is maintained over the entire variety of basis sets that have been tested. Both approximate HF and density functional theory (DFT) calculations are made. We conclude that the accuracy inherent in the KEM is not dependent on a particular choice of basis functions. The first application, to 15 different peptides mentioned above, employed only HF calculations. A second question that arises is whether the results obtained with the use of KEM will be accurate only within the HF approximation. Therefore, in the present work we also study whether KEM is applicable across a variety of quantum computational methods, characterized by differing levels of accuracy. The peptide, Zaib4, containing 74 atoms, was used to calculate its energy at seven different levels of accuracy. These include the semi‐empirical methods, AM1 and PM5, a DFT B3LYP model, and ab initio HF, MP2, CID, and CCSD calculations. KEM was found to be widely applicable across the spectrum of quantum methods tested. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Mechanism of ZnO nanotube growth by hydrothermal methods on ZnO film-coated Si substrates

ZnO nanorods (NRs) and nanotubes (NTs) have been synthesized by a hydrothermal method on Si substrates that had been precoated (by pulsed laser deposition (PLD)) with a thin ZnO film. High-resolution transmission electron microscopy and selected area electron diffraction analysis confirm that the NTs are ZnO single crystals and that their growth direction is along [0001] (the c-axis). Scanning electron microscopy points to the early-time formation of two classes of NRs on the PLD ZnO coating, one of which is longer and displays higher length/diameter aspect ratios than the other. The morphologies of NRs belonging to the first of these classes were seen to evolve with time, progressively tapering, and producing volcano-like surface structures that develop into NTs. In contrast, NRs belonging to the other (shorter) class retain their hexagonal cross-section and have flat tops. To explain these emergent structures and, in particular, the selective growth of ZnO NTs, we have undertaken a systematic investigation of the effects of different substrates (e.g., borosilicate glass, Pt-coated glass, and both bare and PLD ZnO-coated Si wafers) and of the reactive solution on the growth properties of ZnO NRs, NTs, and the ZnO nanopowders that precipitate from the reactive mixture. The experimental findings suggest the following ZnO NT growth mechanism. The PLD ZnO film consists of many nanocrystallites, with a preferred c-axis alignment. These serve to nucleate the hydrothermal growth of (c-axis aligned) NRs. The NRs are deduced to be Zn-polar, but can be either Zn-atom or O-atom terminated. It is proposed that the different surface terminations influence (by electrostatic interactions) the cation (Zn(2+) and ZnOH(+)) to anion (OH(-)) concentration ratio in the double layer at the growing polar surface. Zn-atom termination causes a reduction in the local Zn(2+)/OH(-) (and ZnOH(+)/OH(-)) ratios (i.e., the extent of solution supersaturation) relative to those in the bulk solution, thereby encouraging tapered NR growth and, as the zinc concentration falls further, the emergence of volcano-like structures on the polar surface, which seed the subsequent growth of ZnO NTs.     

Interesting Magnetic and Optical Properties of ZnO Co-doped with Transition Metal and Carbon

Magnetic and optical properties of ZnO co-doped with transition metal and carbon have been investigated using density functional theory based on first-principles ultrasoft pseudopoten-tial method. Upon co-doping with transition metal (TM) and carbon, the calculated results show a shift in the Fermi level and a remarkable change in the covalency of ZnO. Such cases energetically favor ferromagnetic semiconductor with high Curie temperature due to p-d exchange interaction between TM ions and holes induced by C doping. The total en-ergy difference between the ferromagnetic and the antiferromagnetic configurations, spatial charge and spin density, which determine the magnetic ordering, were calculated in co-doped systems for further analysis of magnetic properties. It was also discovered that optical prop-erties in the higher energy region remain relatively unchanged while those at the low energyregion are changed after the co-doping. These changes of optical properties are qualitatively explained based on the calculated electronic structure. The validity of our calculation in comparison with other theoretical predictions will further motivate the experimental inves-tigation of (TM, C) co-doped ZnO diluted magnetic semiconductors.     

Challenges in the simulation of dye-sensitized ZnO solar cells: quantum confinement, alignment of energy levels and excited state nature at the dye/semiconductor interface

We report a first principles density functional theory/time-dependent density functional theory (DFT/TDDFT) computational investigation on a prototypical perylene dye anchored to realistic ZnO nanostructures, approaching the size of the ZnO nanowires used in dye-sensitized solar cells devices. DFT calculations were performed on (ZnO)(n) clusters of increasing size, with n up to 222, of 1.3 × 1.5 × 3.4 nm dimensions, and for the related dye-sensitized models. We show that quantum confinement in the ZnO nanostructures substantially affects the dye/semiconductor alignment of energy levels, with smaller ZnO models providing unfavourable electron injection. An increasing broadening of the dye LUMO is found moving to larger substrates, substantially contributing to the interfacial electronic coupling. TDDFT excited state calculations for the investigated dye@(ZnO)(222) system are fully consistent with experimental data, quantitatively reproducing the red-shift and broadening of the visible absorption spectrum observed for the ZnO-anchored dye compared to the dye in solution. TDDFT calculations on the fully interacting system also introduce a contribution to the dye/semiconductor admixture, due to configurational excited state mixing. Our results highlight the importance of quantum confinement in dye-sensitized ZnO interfaces, and provide the fundamental insight lying at the heart of the associated DSC devices.     

Electron energy levels in semiconductor electrochemistry

The significance of the flat-band potential and the energetic position of the band edges at the semiconductor/electrolyte interface in semiconductor electrochemistry and photoelectrochemistry is pointed out. Different methods for determining these parameters experimentally are discussed, such as methods based on the measurement of the photovoltage or photocurrent, as well as the method for determining the flat-band potential from interfacial capacitance measurements. The capacitance-voltage relationship of the ideal semiconductor/electrolyte Schottky barrier is described. Subsequently, possible complications of the capacitance behavior are discussed, and conditions indicated under which the determination of the flat-band potential from non-ideal capacitance results is still possible. A critical survey is then given of flat-band data for some selected semiconductor electrodes (ZnO, CdS, GaP, GaAs, TiO₂, SrTiO₃), comprising a discussion of problems encountere, factors on which the flat-band potential depends and discrepancies between different results. Attempts to predict the flat-band potential and the position of the band edges from atomic electronegativity data are reviewed. The relationship between flat-band potential or band-edge position and electrochemical behaviour is considered, i.e., as far as the magnitude of the photovoltage as well as the electrochemical and photoelectrochemical reactivity are concerned.     

Fluorescence energy transfer methods in bioanalysis

Energy transfer phenomena, in which excited fluorophores transfer energy to neighbouring chromophores, are well characterised in photochemistry and have found a wide range of applications in analytical biochemistry. The transfer of energy from a donor to an acceptor group is only significant over distances of a few nm, so it can be used as a spectroscopic ruler and as a means of detecting molecular interactions and conformational changes. Such methods usually retain the great sensitivity and sample handling flexibility of conventional fluorescence techniques. As a result many assays involving enzymes, antibodies and nucleotides utilise energy transfer measurement principles. This article outlines these principles for the main types of energy transfer, and summarises some of their most important areas of application.     

Transition states and energy barriers from density functional studies: Representative isomerization reactions

Three representative isomerization reactions (HNC → HCN, CH₃NC → CH₃CN, and N₂H₂ trans → cis and sin) have been studied using both the LCGTO–LSD and LCGTO–NLSD density functional methods and employing a new algorithm for the search and the refinement of the transition-state structures. The inclusion of the nonlocal corrections and the use of large basis sets improve the reliability of the energetic parameters. Results are in good agreement with previous accurate first-principle computations and available experimental data. © John Wiley & Sons, Inc.     

Transition structures and energy barriers of pericyclic reactions in the CASSCF approach

Five energy hypersurfaces of the most examined pericyclic reactions have been investigated by using ab initio SCF , CASSCF , and the semiempirical AM 1 methods. The systems are H₄, H₆, C₃H₆, C₄H₄, and C₃OH₄. Stationary points and their sets of harmonic vibrational frequencies have been calculated by means of analytical gradient techniques in the frameworks of the respective approaches. ZPE corrected energy barriers are based on single-point calculations including dynamical correlation corrections by CAS -CI (SD )+DC , CASCEPA , or MP 2.     

Photostable and luminescent ZnO films: synthesis and application as fluorescence resonance energy transfer donors

Photostable and luminescent ZnO films are effectively engineered from the corresponding nanocrystalline ZnO solutions, and they successfully demonstrated their capability as fluorescence resonance energy transfer (FRET) donors.     

Causes of energy destabilization in carbon nanotubes with topological defects

The relative stability of a family of carbon nanotubes (CNT) with defects has been investigated theoretically with first-principles density functional theory (DFT) calculations, B3LYP/6-31G*. A set of (12,0)?C(8,0) CNT heterojunctions with an increasing number (n?=?1?C4) of pentagon/heptagon defects were studied systematically in different arrangements, and the results were compared with a set of small defective graphene fragments. In addition, tubular structures with two pairs of defects distributed variedly (along and around the CNT) with increasing distances were considered. Within the defective structures, those containing the well-known Stone?CWales defect proved to be the most stable. However, when more than two pairs of defects coexisted, situations where the defects appeared together seemed to be preferred, in sharp contrast to the isolated pentagon rule (IPR) for fullerenes, although this agrees with some previous works on this topic. The junctions studied here constitute different arrangements that help us to identify which effects (geometry and energy) arise from the particular positions and orientations of the defects in nanotubes. Moreover, a close correlation was found between the energy stability and the geometric deformation, measured with the average pyramidalization angle (POAV) and the average trigonal deformation (D ₁₂₀). For this purpose, the different contributions to molecular strain were analysed with the TubeAnalyzer software.     

Enumeration of total aerobic microorganisms in foods by SimPlate Total Plate Count-Color Indicator methods and conventional culture methods: collaborative study

The relative efficacy of the SimPlate Total Plate Count-Color Indicator (TPC-CI) method (SimPlate 35 degrees C) was compared with the AOAC Official Method 966.23 (AOAC 35 degrees C) for enumeration of total aerobic microorganisms in foods. The SimPlate TPC-CI method, incubated at 30 degrees C (SimPlate 30 degrees C), was also compared with the International Organization for Standardization (ISO) 4833 method (ISO 30 degrees C). Six food types were analyzed: ground black pepper, flour, nut meats, frozen hamburger patties, frozen fruits, and fresh vegetables. All foods tested were naturally contaminated. Nineteen laboratories throughout North America and Europe participated in the study. Three method comparisons were conducted. In general, there was <0.3 mean log count difference in recovery among the SimPlate methods and their corresponding reference methods. Mean log counts between the 2 reference methods were also very similar. Repeatability (Sr) and reproducibility (SR) standard deviations were similar among the 3 method comparisons. The SimPlate method (35 degrees C) and the AOAC method were comparable for enumerating total aerobic microorganisms in foods. Similarly, the SimPlate method (30 degrees C) was comparable to the ISO method when samples were prepared and incubated according to the ISO method.     

Total energy calculations in the DFT on binary compounds

Calculations are carried out using first-principles self-consistent local-density and nonlocal density theory of the electronic structure, the total energy, and the charge density of a variety of semiconducting and insulating compounds under hydrostatic and uniaxial pressure. For several cases, the transition pressure from one structure to another is determined as well as the pressure coefficients of the main band gaps. It is shown that several properties are calculated with adequate accuracy to be compared with experiment, so that values which have not yet been measured are trustworthy predictions. © 1995 John Wiley & Sons, Inc.     

Total energy evaluation in the Strutinsky shell correction method

We analyze the total energy evaluation in the Strutinsky shell correction method (SCM) of Ullmo et al. [Phys. Rev. B 63, 125339 (2001)], where a series expansion of the total energy is developed based on perturbation theory. In agreement with Yannouleas and Landman [Phys. Rev. B 48, 8376 (1993)], we also identify the first-order SCM result to be the Harris functional [Phys. Rev. B 31, 1770 (1985)]. Further, we find that the second-order correction of the SCM turns out to be the second-order error of the Harris functional, which involves the a priori unknown exact Kohn-Sham (KS) density, rho(KS)(r). Interestingly, the approximation of rho(KS)(r) by rho(out)(r), the output density of the SCM calculation, in the evaluation of the second-order correction leads to the Hohenberg-Kohn-Sham functional. By invoking an auxiliary system in the framework of orbital-free density functional theory, Ullmo et al. designed a scheme to approximate rho(KS)(r), but with several drawbacks. An alternative is designed to utilize the optimal density from a high-quality density mixing method to approximate rho(KS)(r). Our new scheme allows more accurate and complex kinetic energy density functionals and nonlocal pseudopotentials to be employed in the SCM. The efficiency of our new scheme is demonstrated in atomistic calculations on the cubic diamond Si and face-centered-cubic Ag systems.     

Chemometric methods in energy dispersive X-ray fluorescence

Chemometric methods like principal component regression (PCR) are an excellent tool for the determination of matrix parameters from scattered radiation. PCR is used for the determination of carbon, hydrogen and oxygen from water and oil-based samples. This information is used in combination with fundamental parameters to determine zink in liquid samples. The method allows an accurate prediction of element concentrations in strong varying matrices.