The assignment of signals in the nitrogen NMR spectra of polycyclic diazines

¹⁵N Nitrogen screening data are reported for some polycyclic azines and compared with previous results where available. INDO/S parameterized screening calculations for cinnoline and quinazoline help to decide between alternative nitrogen assignments. Nitrogen solvent shifts of several ppm are reported for all of the molecules studied.     

Definitive assignment of 13C NMR signals in tryptophan and related molecules

Selective photodeuteration of carboxyltryptamines at C-4 allowed to settle the controversy about the ¹³C nmr assignment of C-4, C-5 and C-6, which for tryptophan are definitively assigned at 118.4, 118.2 and 120.6 ppm, respectively.     

New and old NMR experiments for the resonance assignment of complex oligosaccharides--application to a cyclodextrin derivative

The complete assignment of the (1)H and (13)C sugar resonances in mono-3,6-anhydro-heptakis(2,3-O-methyl)-hexakis(6-O-methyl)-β-cyclodextrin, an asymmetrically functionalized β-cyclodextrin, was carried out by means of 2D NMR experiments. The TOCSY and the homonuclear multiple relay COSY spectra provided most of the (1)H assignments. The multiplicity edited HSQC and a set of F(1) selective HSQC-TOCSY and multiple relay HSQC-COSY spectra gave access to most of the (13)C chemical shifts. The latter were fully and accurately determined by means of a pair of complementary, highly folded HSQC-TOCSY spectra. The TOCSY-ROESY and ROESY-TOCSY spectra yielded the sequential assignment of the sugar units. A high resolution F(1) selective F(1) decoupled version of the TOCSY-ROESY experiment was recorded.     

The assignment of the 1H NMR signals to the methine bridge H-atoms in chlorophyll derivatives

Experiments are described which prove the assignments of the α- and β-protons in the ¹H NMR spectra of methyl phaeophorbide a ( 1 ) and methyl pyrophaeophorbide a ( 2 ). Because of the structural relationship between derivatives of the bacteriochlorophylls d ( 5 ) and 2 , dehydration of 5 results in a homologue mixture [2-(des-α-hydroxyethyl)-2-vinyl-bacteriomethyl phaeophorbide] d ( 6 ) of 2. Since the homologue substituents in 6 are located at C-4 and C-5 surrounding the β-H position, and since only one broad signal appears in its ¹H NMR spectrum, this is assigned to the β-proton. This experiment proves that the sequence of increasing shielding is β, α and δ in 6 ; and, therefore, the same sequence applies to the ¹H NMR spectra of 1 and 2 . This knowledge reveals that the product of electrochemical reduction of 1 in deuteromethanol is exclusively an α-chlorin-phlorin ( 8 ). In addition, the ¹H NMR spectrum of the 2-vinyl derivatives of the bacteriomethyl phaeophorbides c ( 7 ) shows the same broad signal at lowest field as does that of 6 . The sequence of increasing shielding is therefore, β, α. The influence of the additional δ-methyl group in 7 on the ring current is explained.     

NMR detection of single-walled carbon nanotubes in solution

The detection of nanotube carbons in solution by (13)C NMR is reported. The highly soluble sample was from the functionalization of (13)C-enriched single-walled carbon nanotubes (SWNTs) with diamine-terminated oligomeric poly(ethylene glycol) (PEG(1500N)). The ferromagnetic impurities due to the residual metal catalysts were removed from the sample via repeated magnetic separation. The nanotube carbon signals are broad but partially resolved into two overlapping peaks, which are tentatively assigned to nanotube carbons on semiconducting (upfield) and metallic (downfield) SWNTs. The solid-state NMR signals of the same sample are similarly resolved. Mechanistic and practical implications of the results are discussed.     

Total assignment and structure in solution of tetrandrine by NMR spectroscopy and molecular modelling

High-resolution 1- and 2D NMR spectra of tetrandrine and molecular modelling were employed to characterise its structure in solution. Complete and unambiguous assignment of all proton and carbon resonance signals is reported. Scalar couplings were determined from dihedral angles with the Karplus equation. Inter-proton distances were evaluated from NOE correlation peaks. Comparison of simulated and X-ray conformations of tetrandrine reveals only small differences.     

Near-IR absorption and fluorescence spectra and AFM observation of the light-harvesting 1 complex on a mica substrate refolded from the subunit light-harvesting 1 complexes of photosynthetic bacteria Rhodospirillum rubrum

The subunit light-harvesting 1 (LH 1) complexes isolated from photosynthetic bacteria Rhodospirillum rubrum using n-octyl-beta-glucoside were reassociated and adsorbed on a mica substrate using spin-coat methods with the aim of using this LH complex in a nanodevice. The near-IR absorption and fluorescence spectra of the LH 1 complexes indicated that the LH 1 complex on the mica was stable, and efficient energy transfer from a carotenoid to a bacteriochlorophyll a was observed. Atomic force microscopy of the reassociated LH 1 complexes, under air, showed the expected ringlike structure. The outer and inner diameters of the ringlike structure of the LH 1 complex were approximately 30 and 8 nm, respectively, and the ringlike structure protruded by 0.2-0.6 nm.     

13C NMR spectra of the aminoglycoside antibiotics streptomycin and dihydrostreptomycin. Complete assignment of the signals

On the basis of the results of a study of the dependence of the chemical shifts of the¹³C NMR spectra streptomycin and dihydrostreptomycin over a wide pH range (from 1.0 to 10.0) and a comparison with the spectrum of streptidine in an acid medium, a complete assignment of the spectra of the antibiotics investigated has been made. The optimum pH values of solutions at which the clearest separation of the resonance signals in the spectra of streptomycin and dihydrostreptomycin have been determined (pH 1.0–7.0 and pH ≤ 8.6, respectively). All-Union Scientific-Research Institute of Antibiotics, Moscow. I. M. Sechinov 1st Moscow Medical Institute. Translated from Khimiya Prirodnykh Soedinenii, No. 5, pp. 695–700, September–October, 1980.     

Three-dimensional solution NMR spectroscopy of complex structures and mixtures

This paper reviews the non-biological applications of three dimensional NMR (3D-NMR) spectroscopy methodologies for studying chemical structures in polymer science, dendrimer research, organometallic chemistry, organosilicon chemistry, and mixtures of small organic molecules. Four methodologies for solving chemical structure problems are described, where the appropriate method is determined by the presence or absence of a third X nucleus (in addition to (1)H and (13)C) with suitable NMR properties.     

Automatic assignment of 13C NMR signals based on the Karplus-Pople equation

A modified version of the method of automatic assignment of ¹³C NMR spectra, based on the Karplus-Pople equation is applied to six substituted benzenes. The results are the same as in the case of simple ¹³C chemical shift/charge density linear relationship previously used: -XR substituted aryls (XO, RH, CH₃, CH₂CH₂OH) yield good correlation and correct automatic assignment, while -CH₂CH₂Y substituents (YH, OH, NH₂) yield poor correlation and incorrect assignment.     

Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [13C,15N]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field

The electronic ground states of the bacteriochlorophyll a type B800 and type B850 in the light-harvesting 2 complex of Rhodopseudomonas acidophila strain 10050 have been characterized by magic angle spinning (MAS) dipolar (13)C-(13)C correlation NMR spectroscopy. Uniformly [(13)C,(15)N] enriched light-harvesting 2 (LH2) complexes were prepared biosynthetically, while [(13)C,(15)N]-B800 LH2 complexes were obtained after reconstitution of apoprotein with uniformly [(13)C,(15)N]-enriched bacteriochlorophyll cofactors. Extensive sets of isotropic (13)C NMR chemical shifts were obtained for each bacteriochlorin ring species in the LH2 protein. (13)C isotropic shifts in the protein have been compared to the corresponding shifts of monomeric BChl a dissolved in acetone-d(6). Density functional theory calculations were performed to estimate ring current effects induced by adjacent cofactors. By correction for the ring current shifts, the (13)C shift effects due to the interactions with the protein matrix were resolved. The chemical shift changes provide a clear evidence for a global electronic effect on the B800 and B850 macrocycles, which is attributed to the dielectrics of the protein environment, in contrast with local effects due to interaction with specific amino acid residues. Considerable shifts of -6.2 < Deltasigma < +5.8 ppm are detected for (13)C nuclei in both the B800 and the B850 bacteriochlorin rings. Because the shift effects for the B800 and B850 are similar, the polarization of the electronic ground states induced by the protein environment is comparable for both cofactors and corresponds with a red shift of approximately 30 nm relative to the monomeric BChl dissolved in acetone-d(6). The electronic coupling between the B850 cofactors due to macrocycle overlap is the predominant mechanism behind the additional red shift in the B850.     

Synthesis and complete assignment of the 1H and 13C NMR signals of new acetamido and aminoflavonoid derivatives

The complete ¹H and ¹³C NMR assignment of 9 acetamidochalcones, 18 acetamidoflavones, 18 aminoflavones, 9 acetamidoflavonols and 9 aminoflavonols has been performed using one‐ and two‐dimensional NMR techniques including COSY, HMQC and HMBC experiments. Copyright © 2010 John Wiley & Sons, Ltd.     

Synthesis and complete assignment of the 1H and 13C NMR signals of some oxopyrancoumarin and oxofuropyrancoumarin derivatives

The synthesis of four pyranocoumarins starting from phloroglucinol and the complete (1)H and (13)C NMR assignment of seven pyranocoumarins has been performed using 1D and 2D NMR techniques including COSY, HMQC and HMBC experiments.     

Complete assignment of the carbon-13 NMR spectrum of chlorophyl a

The ¹³C NMR spectrum (at natural abundance) of monomeric chlorophyll α in acetone-d₆ has been recorded to re-examine the assignments of the low field (aromatic-olefinic) region of the spectrum. The assignments, made by the examination of the fully coupled spectrum and by the use of long-range selective ¹H decoupling (LSPD) with low-power irradiation, were compared with those of the previous reports. The results of the present work clarify the ambiguities previously encountered in the assignment of the 10a-ester, 7c-propionyl, P-2-phytyl, 2b-vinyl, γ- and β-methine carbon atoms, as well as the β-pyrrolic carbon-6 and α-pyrrolic carbons ?16 and ?17 of chlorophyll α. Reassignment of the three last carbons was found necessary. Knowledge of the chemical shifts of these carbon atoms was considered to be particularly valuable, as it yields relevant information on the delocalized π electron system which is crucial for the function of chlorophyll in photosynthesis.     

NMR spectroscopic study of the inclusion complex of desloratadine with β-cyclodextrin in solution

Desloratadine (DES) is an antihistamine used in the treatment of allergies and chronic urticaria. ¹H NMR spectroscopic study of varying ratios of DES and β-Cyclodextrin (β-CD) in D₂O suggests the formation of a 1:1 inclusion complex formed by the penetration of Cl-substituted aromatic ring into the β-CD cavity. The stoichiometry and binding constant of the complex were determined by Scott’s method.     

Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy

In the general view of protein-complex formation, a transient and dynamic encounter complex proceeds to form a more stable, well-defined, and active form. In weak protein complexes, however, the encounter state can represent a significant population of the complex. The redox proteins adrenodoxin (Adx) and cytochrome c (C c) associate to form such a weak and short-lived complex, which is nevertheless active in electron transfer. To study the conformational freedom within the protein complex, the native complex has been compared to a cross-linked counterpart by using solution scattering and NMR spectroscopy. Oligomerization behavior of the native complex in solution revealed by small-angle X-ray scattering indicates a stochastic nature of complex formation. For the cross-linked complex, interprotein paramagnetic effects are observed, whereas for the native complex, extensive averaging occurs, consistent with multiple orientations of the proteins within the complex. Simulations show that C c samples about half of the surface area of adrenodoxin. It is concluded that the complex of Adx/C c is entirely dynamic and can be considered as a pure encounter complex.     

Characterisation of uniformly 13C, 15N labelled bacteriochlorophyll a and bacteriopheophytin a in solution and in solid state: complete assignment of the 13C, 1H and 15N chemical shifts

In this investigation we report a complete assignment of (13)C, (1)H and (15)N solution and solid state chemical shifts of two bacterial photosynthetic pigments, bacteriochlorophyll (BChl) a and bacteriopheophytin (BPheo) a. Uniform stable-isotope labelling strategies were developed and applied to biosynthetic preparation of photosynthetic pigments, namely uniformly (13)C, (15)N labelled BChl a and BPheo a. Uniform stable-isotope labelling with (13)C, (15)N allowed performing the assignment of the (13)C, (15)N and (1)H resonances. The photosynthetic pigments were isolated from the biomass of photosynthetic bacteria Rhodopseudomonas palustris 17001 grown in uniformly (13)C (99%) and (15)N (98%) enriched medium. Both pigments were characterised by NMR in solution (acetone-d(6)) and by MAS NMR in solid state and their NMR resonances were recorded and assigned through standard liquid 2D (13)C-(13)C COSY, (1)H-(13)C HMQC, (1)H-(15)N HMBC and solid 2D (13)C-(13)C RFDR, (1)H-(13)C FSLG HETCOR and (1)H-(15)N HETCOR correlation techniques at 600 MHz and 750 MHz. The characterisation of pigments is of interest from biochemical to pharmaceutical industries, photosynthesis and food research.     

Effect of denaturants on the stability of light-harvesting complex

 The effect of denaturants such as urea and normal alcohols on the formation of light-harvesting (LH) polypeptides/bacteriochlorophyll a (BChla) complex (LH1 complex) in n-octyl-β-D-glucopyranoside (OG) micelle was examined to provide an insight into stability of the complex. The stabilities of the LH1 complex in OG micelle and of the complex in the chromatophore of photosynthetic bacteria were compared by addition of denaturants. The extent of stability of these complexes was monitored by the change in absorbance of Qy band of BChla in these complexes, resulting generally in the blue-shifting of the Qy band from near 870 nm to about 777 nm upon addition of these denaturants. Urea and guanidium hydrochloride (Gnd) showed a relatively weak denaturing effect. Normal alcohols showed stronger denaturing effect, depending on the hydrophobicity of the alcohols. These results imply that the stability of LH1 complex in OG micelle can be largely attributed to the hydrophobic interactions in the complex as well as that of the complex in the chromatophore of photosynthetic bacteria. Received: 23 May 1997 Accepted: 13 September 1997     

Insertion of a bulky rhodium complex into a DNA cytosine-cytosine mismatch: an NMR solution study

The bulky octahedral complex Rh(bpy)2chrysi3+ (chrysi = 5,6-chrysenequinonediimine) binds single-base mismatches in a DNA duplex with micromolar binding affinities and high selectivity. Here we present an NMR solution study to characterize the binding mode of this bulky metal complex with its target CC mismatch in the oligonucleotide duplex (5'-CGGACTCCG-3')2. Both NOESY and COSY studies indicate that Rh(bpy)2chrysi3+ inserts deeply in the DNA at the mismatch site via the minor groove and with ejection of both destabilized cytosines into the opposite major groove. The insertion only minimally distorts the conformation of the oligonucleotide local to the binding site. Both flanking, well-matched base pairs remain tightly hydrogen-bonded to each other, and 2D DQF-COSY experiments indicate that all sugars maintain their original C2'-endo conformation. Remarkably, 31P NMR reveals that opening of the phosphate angles from a BI to a BII conformation is sufficient for insertion of the bulky metal complex. These results corroborate those obtained crystallographically and, importantly, provide structural evidence for this specific insertion mode in solution.