Electronic structure of monosubstituted benzenes and X-ray emission spectroscopy

The electronic structure of fluorobenzene was investigated by X-ray emission spectroscopy (using the F−Kα- and C−Kα-spectra) and quantum-chemical MNDO calculations. Molecular orbitals of fluorobenzene were compared with those of benzene and hydrogen fluoride. The P_π−p_π-interaction between the phenyl ring and the fluorine atom in the fluorobenzene molecule is weak for both the outer and inner π levels. For Part 2, see Ref. 1. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1454–1460, August, 1997.     

Electronic structures of monosubstituted benzenes and X-ray emission spectroscopy 5. Nitrobenzene

The electronic structure of nitrobenzene was studied by X-ray emission spectroscopy. The O-Kα, N-Kα, and C-Kα spectra of the title compound in the gas and solid phases were obtained. Based on the results of quantum chemical MNDO calculations, theoretical spectra were constructed. An interpretation of the experimental spectra is given. π-Interaction between phenyl fragment and nitro group in nitrobenzene is weak. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1297–1300, August, 2006.     

A study of the electronic structure of the hexafluorobenzene and pentafluorobenzene molecules by ultrasoft X-ray emission spectroscopy

The electronic structure of the hexafluorobenzene and pentafluorobenzene molecules was studied by ultrasoft X-ray emission spectroscopy. The FK _α and CK _α spectra of these compounds in the gas phase were obtained. The results of quantum-chemical calculations performed at the RHF/STO-6G//6-31G level were used to construct the theoretical spectra. The highest occupied molecular orbitals were found to consist largely of the 2p _π carbon atomic orbitals. The contribution of fluorine orbitals was small. π-Type interactions mainly involved deeper valence orbitals.     

Chemical Constituents of Brown Rice Grain (<Emphasis Type="Italic">Oryza sativa</Emphasis>)

One new compound 3,7,11,15,19-pentamethyl-9α,10α,11α,17α,18α-pentahydroxy-n-tetracosan-1-oxy-p-hydroxycaffeoate (oryzaterpenyl caffeoate) (1), together with three known fatty acids linoleic acid, stearic acid and myristic acid were isolated and identified from the rice grain of Oryza sativa. The structure of the new compound was elucidated by 1D and 2D NMR spectroscopic techniques (¹H-¹HCOSY, ¹H-¹³C HETCOR) aided by EI-MS, and IR spectra. __________ Published in Khimiya Prirodnykh Soedinenii, No. 6, pp. 535–537, November–December, 2005.     

Orbital phase control of the conformations of α- and β-substituted enamines and vinyl ethers

The conformational stabilities of the α- and β-substituted enamines and vinyl ethers were predicted by orbital phase theory and confirmed by ab initio molecular orbital calculations. Cyclic interaction significantly occurs among the nonbonding orbital n _Y for the lone pair on the hetero atom Y (N in the enamines or O in the ethers), the π and π* orbitals of the CC bond, and the σ_C-H or σ*_C-X orbitals on the substituent CH₂X. The cyclic -n _Y-π-σ_C-H-π*- interaction is favored by the orbital phase continuity in the α-substituted molecules, while the cyclic -n _Y-π-σ*_C-X-π*- interaction is favored in the β-substituted molecules. The most stable conformation was then predicted to be synperiplanar or (pseudo)equatorial in the α-substituted molecules and anticlinical or (pseudo)axial in the β-substituted molecules. Received: 8 May 1998 / Accepted: 30 July 1998 / Published online: 16 November 1998     

Synthesis,characterization, and quantum chemical calculational studies on 3-<Emphasis Type="Italic">p</Emphasis>-methylphenyl-4-amino- 1, 2, 4-triazole-5-thione

The title compound of 3-p-methylphenyl-4-amino-1, 2, 4-triazole-5-thione was synthesized and characterized by elemental analysis, IR, electronic spectra, and X-ray single crystal diffraction. Quantum chemical calculations of the structure, natural bond orbital, and thermodynamic functions of the title compound were performed by using B3LYP/6-311G** and HF-6-311G** methods. Both the methods can well simulate the molecular structure. Vibrational frequencies were predicted, assigned and compared with the experimental values, and B3LYP/6-311G** method is superior to HF/6-311G** method to predict the vibrational frequencies. Electronic absorption spectra calculated by B3LYP/6-311G** method have some red shifts compared with the experimental ones and natural bond orbitals analyses indicate that the two absorption bands are mainly derived from the contribution of n → π^* and π → π^* transitions. On the basis of vibrational analyses, the thermodynamic properties of the title compound at different temperatures have been calculated, revealing the correlations between C ⁰ _p,m , S ⁰ _m , H ⁰ _m , and temperatures.     

Use of unsymmetrical one-range addition theorems of Slater type orbitals in molecular electronic structure determination

In this work, the applicability of the unsymmetrical one-range addition theorems obtained from the use of complete orthonormal sets of Ψ^α-exponential type orbitals (Ψ^α-ETOs, where α = 1, 0, − 1, − 2, ...) to the study of electronic structure of molecules is demonstrated using minimal basis sets of Slater type orbitals (STOs). As an example of application of unsymmetrical one-range addition expansion method to evaluate the multicenter electronic integrals, the calculation has been performed for the ground state of BH ₃ molecule. The results of computer calculations for the orbital and total energies, and linear combination coefficients of symmetrized molecular orbitals are presented.     

Reaction of N-Acyl-α-triphenylphosphonio-α-amino Acid Esters with Organic Bases: Mechanism of the Base-Catalyzed Nucleophilic Substitution of the Triphenylphosphonium Group

Summary.  Reactions of N-acyl-α-triphenylphosphonio-α-amino acid methyl esters with organic bases (triethylamine or DBU) were investigated as the crucial step of the base-catalyzed displacement of the triphenylphosphonium group by nucleophiles. It was proved that N-acyl-α-triphenylphosphonioglycinates are transformed to an equilibrium mixture of the corresponding N-acyliminoacetates and N-acyl-α-triphenylphosphoranylidene glycinates by bases. In the case of N-acyl-α-triphenylphosphonio-α-amino acid esters with quaternary α-carbon, the α-substituted homologues of the N-acyliminoacetates were detected to be the only primary reaction product which, however, can undergo further tautomerization to the corresponding α,β-dehydro-α-amino acid derivatives. In both these cases the reaction of N-acyl-α-triphenylphosphonio-α-amino acid esters with nucleophiles proceeds via the addition of a nucleophile to the activated C=N double bond of the N-acylimino intermediate. Corresponding author. E-mail: romanm@zeus.polsl.gliwice.pl Received October 31, 2001. Accepted (revised) December 17, 2001     

Use of addition theorems in evaluation of multicenter nuclear-attraction and electron-repulsion integrals with integer and noninteger n Slater-type orbitals

Multicenter integrals appearing in the Hartree–Fock–Roothaan equations for molecules are calculated using different kinds of series expansion formulas obtained from the expansions of integer and noninteger n Slater-type orbitals, in terms of Ψ ^α -exponential-type orbitals (where α=1, 0, –1, –2,...) at a displaced center, that form complete orthonormal sets and are represented by linear combinations of integer n Slater-type orbitals. The convergence of these series is tested by calculating concrete cases. The accuracy of the results is quite high for quantum numbers, screening constants, and location of orbitals. Received: 13 February 2002 / Accepted: 11 March 2002 / Published online: 4 July 2002     

Enantiomeric resolution of N-methyl-α-amino acids and α-alkyl-α-amino acids by ligand-exchange chromatography

Summary The enantiomeric resolution of N-methyl-DL-α-amino acids (NMe-AA) and DL-α-alkyl-α-amino acids (AAA) was achieved by ligand-exchange (LE) high performance liquid chromatography (HPLC) using silica bonded L-amino acids as the chiral selector (Chiral ProCu, Chiral HyproCu, Chiral ValCu, Nucleosil Chiral-1). Using aqueous solutions of copper sulfate or acetate adjusted to pH 4–6 and the addition of acetonitrile (10–20%) or methanol (10–40%), baseline resolution occurred in many cases. By comparison with enantiomers of known optical configuration, the elution order of a number of NMe-AA and AAA could be determined and on-line polarimeter detection enabled the assignment of the optical rotation, elution order and configuration of AAA enantiomers. Using a preparative column (300mm × 20mm i.d.) packed with Chiral ProCu, a baseline resolution of 60mg DL-α-methylphenylalanine was achieved. Further, LE-TLC, using a chiral stationary phase (“Chiralplate”), enabled the chiral separation of very hydrophobic AAA, characterized by increasingly large alkyl side chains,viz. the homologous series α-ethylalanine to α-nonylalanine and α-propyl-α-amino-n-butyric acid to α-hexyl-α-amino-n-butyric acid. Presented at the Eleventh International Symposium on Column Liquid Chromatography, June 28–July 3, 1987, Amsterdam, The Netherlands. Parts of the results have also been presented at ANAKON ’87, May 11–14, Baden-Baden, FRG, and the Tenth American Peptide Symposium, May 23–28, 1987, St. Louis, MO, USA.     

Eletronic structure of monosubstituted benzenes and X-ray emission spectroscopy

The electronic structure of benzonitrile has been studied by X-ray spectroscopy. N-K and C-K spectra were recorded. The corresponding theoretical spectra were constructed on the basis of MNDO calculations. The molecular orbitals (MO) of benzonitrile have been compared with those of benzene and hydrogen cyanide. The p-p-interaction between the phenyl fragment and the cyano group has been studied. The contribution of the latter to the highest occupied orbitals of the molecule was shown to be small.For part 1, see Ref. 1.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1251–1254, July, 1994.In conclusion, the authors would like to thank Prof. D. S. Werch (Queen Mary College, London) who put the OHM crystals at their disposal.     

Reactions of α-monochloro- and α,α-dichloro-β-oxoaldehyde acetals with bases

α,α-Dichloro-β-oxoaldehyde diethyl acetals decompose under the action of bases (NaOH, MeONa) with cleavage of the carbon-carbon bond and formation of carboxylic acids or their esters and the dichloroacetaldehyde diethyl acetal carbanion. The latter reactsin situ with benzaldehyde to form stable α-chloro-α,β-epoxyacetal. α-Chloro-α-formyl-γ-butyrolactone diethyl acetal is transformed into α-chloro-α-diethoxymethyl-γ-hydroxybutyric acid under the action of an alkali. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 685–687, April, 1998.     

Interaction of polynitro compounds with difluoroamine

Difluoroamine does not react with tetranitromethane and fluoro-, chloro-, and bromotrinitromethanes in DMF and in acidic media (CF₃COOH, ClSO₃H, FSO₃H, and oleum), but reacts with α-fluoro- and α-(difluoroamino)-α,α-dinitrotoluenes to give substitution products of the difluoroamino group for both the nitro groups,viz., PhC(NF₂)₂F and PhC(NF₂)₃, respectively. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1647–1649, August, 1998.     

Structures of new polar steroids from the Far-Eastern starfish <Emphasis Type="Italic">Ctenodiscus crispatus</Emphasis>

A fraction of sulfated polyhydroxylated steroids from the Far-Eastern starfish Ctenodiscus crispatus was investigated. The main component of this fraction was identified as (22E,24R,25R)-24-methyl-5α -cholest-22-en-3β,5,6β,15α,25,26-hexol 26-O-sulfate. For the compound stereoisomeric with respect to the side chain, the (24R,25S) or (24S,25R) relative configurations were assigned to the C(24) and C(25) chiral centers. The structures of two other compounds isolated from the fraction were identified as (22E, 24ξ)-26,27-bisnor-24-methyl-5α-cholest-22-en-3β,5,6β,15α,25-pentol 25-O-sulfate and (22E, 24ξ,25ξ)-24-methyl-5α-cholest-22-en-3β,5,6β,8,15α,25,26-heptol 26-O-sulfate. Dedicated to Academician N. K. Kochetkov on the occasion of his 90th birthday. __________ Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1229–1234, May, 2005.     

Structures of ferrocenylalkyl derivatives of adenine

9-(α-Ferrocenylethyl)adenine was prepared by the reaction of adenine with α-hydroxyethylferrocene in a two-phase aqueous-organic medium in the presence of HBF₄. The structure of the resulting compound was established by X-ray diffraction analysis. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1828–1831, September, 1998.     

Photoelectron spectrum and quantum chemical analysis of the structure of bis(1,3,6-trimethyluracilyl-5)methane

Photoelectron spectra of bis(1,3,6-trimethyluracilyl-5)methane (I) and 1,3,6-trimethyluracil (II) were studied; AM1 optimization of geometric characteristics was carried out. The total energy minimum and the best agreement between the values of IP_m and -ɛ_m were obtained for conformations with nearly orthogonal location of uracilyl fragments. In such conformations, the highest occupied orbitals are pseudodegenerate. To interpret the photoelectron spectra, we employed ab initio calculations in STO-3G and 4-31G basis sets. For uracil and its derivatives, all methods give the π, π, n⁻, n⁺, π sequence of the highest orbitals. A. E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center, Russian Academy of Sciences. Translated fromZhurnal Struktumoi Khimii, Vol. 36, No. 1, pp. 102–107, January–February, 1995. Translated by L. Smolina     

A quantitative prediction of the electronic spectra of thiocarbonyl chromophores: TD-DFT versus SAC-CI

In this contribution, we set up a SAC-CI methodology to evaluate the n → π* and π → π* vertical transition energies of a series of thiocarbonyl derivatives. We show that Frozen-Core SAC-CI provides accurate vertical excitations energies. Nevertheless, in order to obtain converged results, the R2S2 unliked integrals have to be taken into account in L3-SAC-CI calculations. In addition, we present the comparative performances of three computational procedures, INDO/S, TD-DFT, and SAC-CI, for the calculation of valence excited states energies and it turns out that: (1) no tuning of the exact exchange (α) included in TD-DFT allows to consistently reproduce the SAC-CI results; (2) SAC-CI and TD-B3LYP both evaluate the n → π*, as well as the π → π* transition energies, with a similar accuracy. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Investigation of UV spectra of isomeric nitropyrazoles by the semiempirical AM1 (CI) method

The absorption bands in the UV spectra of isomeric nitropyrazoles were assigned by the calculations in the semiempirical AMI (CI) approximation. The long-wave absorption of nitropyrazoles is caused by π→π* and η₀→π* transitions. The charge-transfer band is the most intense. The π→π* transitions undergo a considerable bathochromic shift in the deprotonation. The first ionization potential (PI) of the 4-nitropyrazole anion was estimated from the empirical dependence of the energy of the excited π-state on PI of alkyl-substituted 4-nitropyrazoles. The PI of the 4-nitropyrazole anion is 3 eV lower than that of a neutral molecule. This is evidence for a substantial destabilization of the boundary β-orbital in the heterolytic cleavage of the N−H bond. The analysis of the UV and NMR spectra of 3(5)-nitropyrazole confirms the viewpoint that the 3-nitro tautomer predominates in solution. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya. No. 2, pp. 310–314, February, 1997.     

Regioselective phosphorylation of α-N-alkylamino ketones

General preparative methods for regioselective functionalization of α-amino ketones with organophosphorus reagents were developed. Stable phosphorylated derivatives of all their prototropic forms (α-amino ketones, α-hydroxy imines, and β-hydroxy enamines) were obtained for the first time. The relative thermodynamic stability sequence of α-amino ketones was found to be reversed upon their phosphorylation: O-substituted forms were more stable than N-substituted ones, in contrast to the equilibrium between the prototropic isomers. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 288—293, February, 2006.     

Solid state linear-dichroic infrared (IR-LD) spectroscopic characterization of α-and β-glycine polymorphs

IR-LD spectroscopic analysis using nematic liquid crystal suspension as a solid-state orientation technique and the reducing-difference procedure for polarized spectra interpretation are applied to the α-and β-polymorphs of glycine. Both structural analysis and detailed IR band assignments were carried out.