Solvothermal syntheses and crystal structures of two 4‐heterocyclic acylpyrazolone complexes

Many explorations of transition metal (M)‐L system under solvothermal condition, have led to the syntheses of two new 4‐heterocyclic acylpyrazolone complexes [Co(L)₂(CH₃OH)₂] (HL = 1‐phenyl‐3‐methyl‐4‐(2‐furoyl)‐5‐pyrazolone) ( 1 ) and [Cr(L)₃] ( 2 ). Single‐crystal X‐ray analyses reveal that crystal structures of compound 1 and 2 are respectively orthorhombic, Pbca, a = 15.0378(6) Å, b = 9.8405(4) Å, c = 20.7321(8) Å, V = 3067.9(2) ų, Z = 8 and triclinic, P‐1, a = 10.7966(18) Å, b = 13.023(2) Å, c = 15.520(3) Å, α = 73.011(4)°, β = 84.884(4)°, γ = 70.267(4)°, V = 1964.3(6) ų, Z = 2. Complex 1 has a two‐dimensional (2D) network structure that is formed by O–H···N H‐bonding interactions. Complex 2 makes a one‐dimensional (1D) zigzag chain structure by intermolecular π···π interactions, which is further interlinked via C–H···N H‐bonding interactions to generate a 2D sheet, and then a three‐dimensional (3D) supramolecular network structure is further linked by intermolecular C–H···π interactions. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Synthesis and crystal structure investigation of pyridine‐2‐(3′‐mercaptopropanoic acid)‐N ‐oxide

Pyridine‐2‐(3′‐mercaptopropanoic acid)‐N ‐oxide (I), is a higher homologue of 1‐oxopyridinium‐2‐thioacetic acid (II) [1]. It crystallizes in monoclinic space group P2₁ with a = 9.2168(2) Å, b = 4.1423(2) Å, c = 11.3904(4) Å, β = 98.65(2)°, V = 429.93(3) ų and Z = 2. The least‐squares refinement gave residual index R = 0.024 for 1070 observed reflections. The introduction of an additional methylene group in (II) causes a flip in the carboxylic acid group of (I) that facilitates the molecules to align infinite antiparallel chains through strong C–H···O interactions. The molecules are interlinked by O–H···O hydrogen bonding across the chains and forming an infinite screw chain along y‐direction. The molecular packing is stabilized by O–H···O and C–H···O hydrogen bonding and π‐π electron interactions. This is an important facet of the crystal packing. (© 2007 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Salt and co-crystal formation from the reaction of fumaric acid with different N-heterocyclic compounds: Experimental and DFT study

In this work, four fumaric acid adducts with different nitrogenous bases were synthesized and characterized with FT-IR, ¹H NMR, ¹³C NMR and UV-Vis. spectroscopies. The solid-state structures of the compounds were determined by X-ray diffraction analysis. In addition, quantum chemical calculations employing density functional theory (DFT/B3LYP) method with the 6???311++G(d,p) basis set were performed to study the structural and spectroscopic properties of the compounds, and the results were compared with the experimental findings. X-ray analysis suggests that the crystal structures is stabilized by O–H···O, N–H···O, O–H···N and C–H···O type hydrogen bonds and also π···π stacking interactions. The harmony between the experimental and theoretical structural and spectroscopic data is acceptable in general.     

Hyperpolarizability,Hirshfeld, and density functional theory computations of a nonlinear optical picrate

bis(2-nitroaniline) picrate (BNP) single crystals was grown by slow evaporation growth technique using mixed solvent system with methanol–acetone (1:1, v/v) at a constant temperature, and the structure was interpreted by single crystal X-ray, Power Diffraction (XRD) analysis. Inter- and intramolecular hydrogen bonding interactions were interpreted, and crystal cohesion was architectured by N-H···O, O-H···O, C-H···N, H···H, O···O, and π···π staking interactions. All intermolecular interactions occurring in the crystal lattice were calculated using fingerprint analysis. Interaction strengths were graphically illustrated by the Hirshfeld surface analysis. The band gap energy of BNP was estimated by the application of the Kubelka–Munk algorithm. Nonlinear optical behavior was confirmed by the Kurtz–Perry technique. Optimized geometry was derived by the density functional theory calculations. The first-order molecular hyperpolarizability (β) and excited state energies were estimated by the time-dependent density functional theory analysis.     

Supramolecular structure of 5-methyl-5-phenyl hydantoin and hydrogen-bonding patterns in 5,5′-substituted hydantoins

The crystal structure of heterocyclic compound 5-methyl-5-phenyl hydantoin has been determined from X-ray single crystal structural characterization. This material crystallizes in the orthorhombic system and noncentrosymmetric space group P21 (N°4). The crystal packing is governed by N–H···O hydrogen bond-type intermolecular interactions, forming chains and edge-fused 12-membered rings with graph-set C(4) C(5) C22(8) R33(12) in a similar hydrogen-bonding pattern of another chiral 5,5′-substituted hydantoins.     

Crystal structure and packing analysis of nitrofurantoin N,N-dimethylformamide solvate

The N, N′-dimethylformamide solvated crystal of the drug nitrofurantoin has been prepared and analysed by single-crystal X-ray diffraction. The two co-crystallized molecules, in the 1 : 1 stoichiometric ratio, are linked by a medium/strong N–H···O hydrogen bond (N···O is 2.759 (3) Å) and a weaker C–H···O interaction to form isolated supramolecular adducts, that in turn are packed into the lattice framework mainly through C–H···O hydrogen bonds. Two-dimensional fingerprint plots of Hirshfeld surfaces are used to visualize, analyze and compare intermolecular interactions found in the title compound and in similar structures.     

Crystal structure,spectroscopic properties,and DFT studies of 2-(2-hydroxyphenyl)benzo[d]oxazole-6-carbaldehyde

The title compound 2-(2-hydroxyphenyl)benzo[d]oxazole-6-carbaldehyde (1a) was synthesized and characterized by single-crystal X-ray diffraction. Compound 1a possesses intramolecular C–H···O and O–H···N hydrogen bonds, which generate S(5) and S(6) rings, respectively. Intermolecular π–π stacking is observed in the crystal structure, which links a pair of molecules into a cyclic centrosymmetric dimer. The crystal structure is further stabilized by three different intermolecular C–H···O hydrogen bonds, which link the molecules into a continuous three-dimensional framework. Its spectroscopic properties and complementary density functional theory (DFT) calculations are also reported.     

Synthesis and crystal structure of a new 2,6-dimethyl piperazine-1,4-diium perchlorate monohydrate: [C<Subscript>6</Subscript>H<Subscript>16</Subscript>N<Subscript>2</Subscript>](ClO<Subscript>4</Subscript>)<Subscript>2</Subscript> · H<Subscript>2</Subscript>O

A proton transfer compound 2,6-dimethyl piperazine-1,4-diium perchlorate monohydrate was synthesized by slow evaporation at room temperature using 2,6-dimethyl piperazine as template. The asymmetric unit contains one organic dication, two crystal graphically independent perchlorate anions and one water molecule. Each organic entities is engaged in a large number of bifurcated and non-bifurcated N–H···O (O) and C–H···O hydrogen bonds with different species and enhanced the three dimensional supramolecular network. In addition, the diprotonated piperazine ring adopts a chair conformation with the methyl groups occupying equatorial positions.     

Experimental and theoretical spectroscopic and structural analyses of a new chalcone single crystal derived from 4-bromo-2-thiophenecarboxaldehyde

A new chalcone compound, (E)-1-([1,1′-Biphenyl]-4-yl)-3-(4-bromothiophen-2-yl)prop-2-en-1-one (BBTP), crystallizes in the monoclinic space group P2₁/c and its structure has been characterized by Fourier transform infrared (FTIR), nuclear magnetic resonance (NMR), and ultraviolet and visible (UV-Vis) absorption spectroscopy. The structural and spectroscopic analyses of the chalcone were calculated using DFT/B3LYP method. Molecular structure, crystal structure arrangement, and intermolecular hydrogen bond interactions were determined by single crystal X-ray diffraction method. In the crystal packing, intermolecular C?H···O hydrogen bonds and C?H···π interaction formed infinite two-dimensional sheets, thus strengthening the crystal structure. Hirshfeld surface analysis, HOMO-LUMO, and molecular electrostatic potential results are also reported.     

Crystal and molecular structure of 1‐allyl‐5‐(4‐methylbenzoyl)‐4‐(4‐methylphenyl)pyrimidine‐2(1H)‐thione

The crystal structure of 1‐allyl‐5‐(4‐methylbenzoyl)‐4‐(4‐methylphenyl)pyrimidine‐2(1H)‐thione (C₂₂H₂₀N₂OS) has been determined from three dimensional single crystal X‐ray diffraction data. The title compound crystallizes in the monoclinic space group P 2₁/c, with a = 10.6674(13), b = 10.1077(7), c = 17.9467(19) Å, β = 98.460(9)°, V = 1914.0(3) ų, D_calc = 1.251 g cm^–3, Z = 4. In the title compound, the allyl group shows positional disorder. Molecules are linked by C‐H···O, C‐H···N and C‐H···S intermolecular interactions forming two‐dimensional network. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystal and Molecular Structure of 3,5-Diphenyl-4,5-dihydro-2-phenylcarboxamide-1H-pyrazole

Crystal structure of the title compound C₂₂H₁₉N₃O is determined by single crystal X-ray diffraction (sp. gr. P2₁/c, Z = 4). The molecule as a whole, is not planar: phenyl cycles are rotated relative to the plane of pyrazole ring. N?H···N intramolecular hydrogen bond forms five-membered ring fused to pyrazole ring. There are also intramolecular C?H···O and C?H···π interactions. Intermolecular C?H···O hydrogen bond links the molecules into a C(7) chain along the a axis. The crystal structure is stabilized also by C–H···π and π···π intermolecular hydrogen bonds.     

Synthesis,Crystal Structure and Characterization of (Z)-2-N′-hydroxyisonicotinamidine

The compound (Z)-2-N′-hydroxyisonicotinamidine, (2) was synthesized and characterized by ¹H NMR, FT-IR, FAB-Mass, UV-Visible Spectra, and elemental Analysis. Its molecular structure was solved by single crystal X-ray diffraction method. The title molecule, C₆H₇N₃O is crystallized in the orthorhombic crystal system with the space group Pna2₁ and with unit cell parameters a = 12.5664(8) Å, b = 8.8622(6) Å, c = 5.7953(4) Å, α = 90°, β = 90°, γ = 90°, and Z = 4. The molecular and crystal structure of the title molecule is stabilized by an intramolecular interaction of the type N—H···O, and the intermolecular interactions of types N—H···N and O—H···N.     

Structural and Spectroscopic Study of Cu(II) Pyridine-2,6-dicarboxylate Complex with 2-Ethylimidazole

Abstract  

A mononuclear copper(II) complex, [Cu(pydca)(2-Etlm)(H₂O)] (1) (H₂pydca = pyridine-2,6-dicarboxylic acid, 2-Etlm = 2-ethylimidazole), has been synthesized and characterized by elemental analyses, IR, UV–Vis, TG-DTA and single crystal X-ray diffraction. The complex 1 is in the orthorhombic crystal system, space group Pbca and Z = 8. The structural analysis indicated that Cu(II) center is five coordinated in a slightly distorted square pyramidal geometry by one N and two O atoms from a 2,6-pyridine dicarboxylate dianion, one N atom from a 2-ethylimidazole ligand, and one O atom from a aqua molecule. This mononuclear motif of 1 is further assembled to 3D supramolecular framework through strong O–H···O and N–H···O hydrogen bonding interactions.     

Near Supramolecular Isomorphism Involving Homologous Solvents: Pyrimethaminium Terephthalate Methanol Solvate and Pyrimethaminium Terephthalate Ethanol Solvate

Abstract  

Two nearly isostructural pseudopolymorphic forms of pyrimethaminium terephthalate have been synthesized and their supramolecular architectures analyzed. In both the crystals, the protonated pyrimethamine (PMN) cation interacts with the carboxylate anion via N–H···O hydrogen bonds to form the robust R₂²(8) motif. The centrosymmetrically (N–H···N) paired PMN cations are bridged on either sides by interaction of the solvent molecules with the amino groups (N–H···O) of PMN cations. The combination of two R₂²(8) motifs formed between the PMN cations and PMN cation solvent, leads to the formation of the complementary DADA (D = hydrogen bonded donor, A = hydrogen bonded acceptor) array of quadruple hydrogen bonds. The solvent molecule further interacts with the corresponding anion via O–H···O hydrogen bonds. Moreover, both the solvates exhibit several edge to face stacking interactions. They have in common, two C–H···π interactions; one between the symmetry related cations and other between the cation and anion. The molecular packing of the ethanol solvate is further strengthened by C–H···O and C–H···π interaction between the solvent and the ions.     

Synthesis and Crystal Structure of 7,8,9,10-Tetrahydro-2-bromo-cyclohepta[<Emphasis Type="Italic">b</Emphasis>]indol-6(5<Emphasis Type="Italic">H</Emphasis>)-one

The title compound, C₁₃H₁₂BrNO, was synthesized and characterised by IR, ¹H and ¹³C NMR spectroscopy. The proposed structure was confirmed by single crystal X-ray diffraction. The single crystal data revealed that the compound crystallizes in the triclinic system, sp. gr. P1, with Z = 2. The sevenmembered ring exhibits a slightly distorted envelope conformation. N–H···O hydrogen bonds form a centrosymmetric dimer, these interactions create a stair-like chain of molecules that interacts only loosely with neighbouring chains via van der Waals interactions, and C–H···π contacts are found in the crystal structure.     

Crystal Structure of 4-Amino-3-(thiophen-2-ylmethyl)-1H-1,2,4-triazole-5(4H)one Monohydrate

The molecular structure of the 4-amino-3-(thiophen-2-ylmethyl)-1H-1,2,4-triazole-5(4H)one monohydrate was determined by X-ray diffraction. The compound crystallizes in the monoclinic sp. gr. C2/c with Z = 4 in the unit cell. The title compound is not planar. The dihedral angle between the thiophene and 1,2,4-triazole rings is 73.4(5)°. In the crystal structure, the molecules are connected by intermolecular N–H···O, N–H···N, O–H···O, and C–H···N type hydrogen bonds. The N–H···N and C–H···N hydrogen bonds link the molecules into infinite chains along the c axis.     

1-[(Pyridine-2-ylamino)methyl]pyrrolidine-2,5-dione: Supramolecular Aggregation via Cooperative H-bonded Network of N–H···N and C–H···O Interactions

Abstract  

In the crystal structure of the title compound, C₁₀H₁₁N₃O₂, the pyrrolidine ring adopts a puckered envelope conformation. The supramolecular architecture is dictated by the cooperative H-bonded network of centrosymmetric dimers of N–H···N and C–H···O interactions. Two edge to face C–H···π interactions involving the centroid of the pyrrolidine ring contribute to the supramolecular aggregation.     

A new supramolecular cocrystal of 2-amino-3-bromopyridine with 4-methylbenzoic acid: Synthesis,structural, spectroscopic characterization and comparative theoretical studies

The 1:1 cocrystal of 2-amino-3-bromopyridine (2A3BP) with 4-methylbenzoic acid (4MBA) has been prepared by slow evaporation method in methanol, which was crystallized in monoclinic P2₁/c space group having two molecules in the asymmetric unit. The cocrystal has been characterized by single crystal X-ray analysis, FTIR, ¹H NMR, ¹³C NMR, and Powder XRD. Theoretical investigations have been calculated by HF and density function (B3LYP) method with the 6-311+G(d,p) basis set. The vibrational frequencies together with the ¹H NMR and ¹³C NMR chemical shifts have been calculated on the fully optimized geometry of 1. Theoretical calculations of bond parameters, harmonic vibration frequencies, and isotropic chemical shifts are in good agreement with the experimental results. Solvent-free formation of these cocrystal was confirmed by powder X-ray diffraction analysis. The crystal structure was stabilized by N_pyridine—H···O = C, C = O—H···N_pyridine and C—H···Br hydrogen bonding interactions.     

Synthesis,Characterization and Crystal Structure of (<Emphasis Type="Italic">S</Emphasis>)-2-(2-Hydroxynaphthalen-6-yl)-<Emphasis Type="Italic">N</Emphasis>-((pyridin-4-yl)methyl) Propanamide

Abstract  

The synthesis, characterization and crystal structure of the title compound, (S)-2-(2-hydroxynaphthalen-6-yl)-N-((pyridin-4-yl)methyl) propanamide, is described. The salt is enantiomerically pure and crystallize in the orthorhombic P2₁2₁2₁ chiral space group with a = 7.9174(13) ?, b = 11.1583(18) ?, c = 11.2600(18) ?. Each molecule is linked to four neighboring molecules through the O–H···O and N–H···N hydrogen bonds into a supramolecular helical chain. The O–H···O and N–H···N hydrogen bonds lead to 24-membered open rings. Chains are further connected into layers via extensive interchain H···O and H···C short contacts.     

Supramolecular Network via Hydrogen Bonding and π–π Stacking in 4,4′-Bipyridin-1-ium Perchlorate Dihydrate

Abstract The crystal structure of 4,4′-bipyridin-1-ium perchlorate dihydrate, [C₁₀H₉N₂](ClO₄) · 2H₂O, is determined by room temperature X-ray diffraction. The compound crystallizes in the triclinic space group P-1 with a = 8.122(3) ?, b = 9.726(3) ?, c = 17.648(6) ?, α = 78.181(4)°, β = 82.797(5)°, γ = 67.439(4)°, Z = 2, V = 1258.4(7) ?³. In the compound, monoprotonated 4,4′-bipyridin-1-ium cations are self-assembled into supramolecular chains along the a-axis through N–H···N hydrogen bonds in a head-to-tail fashion. The chains are stacked via π–π stacking interactions to create two-dimensional sheets. The interlayer space is occupied by the hydrogen-bonded water chains that are linked to the organic sheets via C–H···O interactions and the perchlorate anions that are linked to the water chains and the organic sheets via O–H···O and C–H···O hydrogen bonds, respectively, thus generating a three-dimensional supramolecular architecture. Index Abstract Supramolecular Network via Hydrogen Bonding and π–π Stacking in 4,4′-Bipyridin-1-ium perchlorate dihydrate Jian-Yong Zhang, Ai-Ling Cheng and En-Qing Gao* Monoprotonated 4,4′-bipyridin-1-ium cations are self-assembled into supramolecular chains along the a-axis through N–H···N hydrogen bonds, and these chains are stacked via π–π stacking and hydrogen bond interactions involving water molecules and perchlorate anions.