FT‐Raman,FT‐IR spectra and DFT calculations on monomeric and dimeric structures of 5‐fluoro‐ and 5‐chloro‐salicylic acid

The experimental and theoretical study on the structures and vibrations of 5‐fluoro‐salicylic acid and 5‐chloro‐salicylic acid (5‐FSA and 5‐ClSA, C₇H₅FO₃ and C₇H₅ClO₃) is presented. The Fourier transform infrared spectra (4000–400 cm⁻¹) and the Fourier transform Raman spectra (4000–50 cm⁻¹) of the title molecules in the solid phase were recorded. The molecular structures, vibrational wavenumbers, infrared intensities, Raman intensities and Raman scattering activities were calculated for a pair of molecules linked by the intermolecular O H···O hydrogen bond. The geometrical parameters and energies of 5‐FSA and 5ClSA were obtained for all eight conformers/isomers from density functional theory (DFT) (B3LYP) with 6‐311++G(d,p) basis set calculations. The computational results identified the most stable conformer of 5‐FSA and 5‐ClSA as the C1 form. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The spectroscopic and theoretical results were compared with the corresponding properties for 5‐FSA and 5‐ClSA monomers and dimer of C1 conformer. The optimized bond lengths, bond angles and calculated wavenumbers showed the best agreement with the experimental results. Copyright © 2010 John Wiley & Sons, Ltd.     

Time‐dependent density functional theory study on the excited‐state hydrogen bonding strengthening of photoexcited 4‐amino‐1,8‐naphthalimide in hydrogen‐donating solvents

The time‐dependent density functional theory (TDDFT) method was performed to investigate the excited‐state hydrogen bonding dynamics of 4‐amino‐1,8‐naphthalimide (4ANI) as hydrogen bond acceptor in hydrogen donating methanol (MeOH) solvent. The ground‐state geometry optimizations, electronic transition energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated 4ANi and hydrogen‐bonded 4ANi‐(MeOH)_1,4 complexes were calculated by the DFT and TDDFT methods, respectively. We demonstrated that the intermolecular hydrogen bond C═O···H–O and N–H···O–H in the hydrogen‐bonded 4ANi‐(MeOH)_1,4 is strengthened in the electronically excited state, because the electronic excitation energies of the hydrogen‐bonded complex are correspondingly decreased compared with that of the isolated 4ANi. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electronically excited state of fluorescent dye in hydrogen‐donating solvents exists in many other systems in solution. Copyright © 2013 John Wiley & Sons, Ltd.     

A DFT study on Diels–Alder cycloadditions of trans‐1,3‐butadiene to C60 and C70

Investigation of the relative reactivity of bonds in fullerenes will provide fundamental theory for the design of fullerene‐based materials. We have theoretically investigated the reactivity of the Diels–Alder (DA) cycloaddition of cis‐1,3‐butadiene to all types of bonds in C₆₀ and C₇₀ using the M06‐2X hybrid density functional theory (DFT) calculations (J. Phys. Org. Chem. 2012, 25 850–855) and have pointed out that the DA cycloadditions of cis and trans forms of 1,3‐butadiene to ethylene have a specially intimate relationship (J. Phys. Org. Chem. 2014, 27 652–660). For the aim of telling a whole story of the DA cycloaddition concerning C₆₀ and C₇₀, the DA cycloadditions of trans‐1,3‐butadiene to all types of bonds in C₆₀ and C₇₀ were explored at the same theoretical level as those of the cis‐1,3‐butadiene. The calculated results related with the trans‐ and cis‐1,3‐butadienes were compared. The potential energy curves of DA cycloadditions of trans‐ and cis‐1,3‐butadiene to C₆₀ and C₇₀ were discussed. The distortion–interaction energy model was employed to elucidate the origin of different reactivity of all kinds of C?C bonds. The solvent effects were examined using the continuum solvent model. These current results, along with our previous research, will help to obtain an overall view of the DA cycloadditions of 1,3‐butadiene to C₆₀ and C₇₀. Copyright © 2014 John Wiley & Sons, Ltd.     

Raman and ab initio study of the conformational isomerism in the 1‐ethyl‐3‐methyl‐imidazolium bis(trifluoromethanesulfonyl)imide ionic liquid

The calculated and experimental Raman spectra of the (EMI⁺)TFSI⁻ ionic liquid, where EMI⁺ is the 1‐ethyl‐3‐methylimidazolium cation and TFSI⁻ the bis(trifluoromethanesulfonyl)imide anion, have been investigated for a better understanding of the EMI⁺ and TFSI⁻ conformational isomerism as a function of temperature. Characteristic Raman lines of the planar (p) and non‐planar (np) EMI⁺ conformers are identified using the reference (EMI⁺)Br⁻ salt. The anion conformer of C₂ symmetry is confirmed to be more stable than the cis (C₁) one by 4.5 ± 0.2 kJ mol⁻¹. At room temperature, the population of trans (C₂) anions and np cations is 75 ± 2% and 87 ± 4%, respectively. Fast cooling quenches a metastable glassy phase composed of mainly C₂ anion conformers and p cation conformers, whereas slow cooling gives a crystalline phase composed of C₁ anion conformers and of np cation conformers. Copyright © 2006 John Wiley & Sons, Ltd.     

Hydrogen bond nature in formamide (CYHNH2···XH; YO,S, Se,Te; XF,HO, NH2) complexes at their ground and low‐lying excited states

A theoretical study on the nature of hydrogen bond for formamide and its heavy complexes (CYHNH₂···XH; Y?O, S, Se, Te; X?F, HO, NH₂) was performed on the basis of density functional theory and the quantum chemistry analysis. Except for the CYHNH₂···NH₃ complexes, the substitution of O atom at formamide with less electronegative atoms (S, Se, and Te) is found to weaken the hydrogen bond (H‐bond). This substitution results in cyclic structure of hydrated and ammoniated formamide complexes by the formation of bifunctional H‐bonds (Y···H₄X; X···H₃C). Natural bond orbital analysis indicates that the H‐bond is weakened because of less charge transfer from a lone pair orbital of H‐bond acceptor to antibonding orbital of H‐bond donor. The quantum theory of atoms in molecules analysis reveals that the acyclic structure with single H‐bond stabilizes the complexes more than the cyclic structure formed by bifunctional H‐bonds. Natural energy decomposition analysis (NEDA) and block‐localized wavefunction energy decomposition (BLW‐ED) analyses show that the H‐bond stabilization energies of NEDA and BLW‐ED have good correlation with the dissociation energy of formamide complexes and charge transfer from donor to acceptor atom play an important role in H‐bonding. We have also studied the low‐lying electronic excited states (T₁, T₂, and S₁) for CYHNH₂···H₂O complexes to explore the nature of H‐bond on the basis of electronegativity and found that NEDA also establishes a good correlation with relative electronic energy (with respect to their ground state) and H‐bond strength at their excited states. Copyright © 2014 John Wiley & Sons, Ltd.     

Rotational disorder in 2‐piperidyl‐5‐nitro‐6 ‐methylpyridine: structural phase transition and its vibrational characteristics

X‐ray diffraction (XRD) studies have shown that 2‐piperidyl‐5‐nitro‐6‐methylpyridine, C₁₁H₁₅N₃O₂, undergoes a structural phase transition at T = 240 K. The room temperature structure is tetragonal, space group I4₁/a, with the unit‐cell dimensions a = 13.993(2) and c = 23.585(5) Å. The pyridine ring takes trans conformation with respect to the piperidine unit. While pyridine is well ordered, the piperidine moiety shows apparent disorder resulting from a libration about the linking N C bond. The low‐temperature phase is monoclinic, space group I2/a. Contraction of the unit‐cell volume by 2.3% at 170 K enables the C H···O linkage between the molecules of the neighbouring stacks. As result, the asymmetric unit becomes bi‐molecular. The thermal librations of the piperidine and methyl groups become considerably reduced at 170 K and nearly fully reduced at about 100 K. The IR spectra and polarised Raman spectra agree with the X‐ray structure and confirm the disorder effect on the piperidine ring. The assignment of the bands observed was made on the basis of DFT chemical quantum calculations. Copyright © 2008 John Wiley & Sons, Ltd.     

Structures and Vibrational Spectra of the Hydrogen-Bonded Complexes Between Nitrous Acid and Acetone: Ab Initio and DFT Studies

ABSTRACT

The structures, stability, and vibrational spectra of the binary complexes formed between acetone and nitrous (trans and cis) acid have been investigated using ab initio calculations at the SCF and MP2 levels and B3LYP calculations with 6-311++G(d,p) basis set. Full geometry optimization was made for the complexes studied. It was established that the complex (CH₃)₂CO···HONO-trans is more stable than the complex (CH₃)₂CO···HONO-cis by 0.5–0.8 kcal·mol^?1. The accuracy of the calculations has been estimated by comparison between the predicted values of the vibrational characteristics (vibrational frequencies and infrared intensities) and the available experimental data. It was established, that the methods, used in this study are well adapted to the problem under examination. The predicted values with the B3LYP/6-311++G(d,p) calculations are very near to the results, obtained with MP2/6-311++G(d,p). The calculated frequency shift Δν(O[sbnd]H) for the complex (CH₃)₂CO···HONO-trans (1A) is larger than for the complex (CH₃)₂CO···HONO-cis (1B). In the same time the intensity of this vibration increases dramatically upon hydrogen bonding. The calculated increase for the complex 1A is up to 15 times and for the complex 1B is up to 30 times. The changes in the vibrational characteristics (vibrational frequencies and infrared intensities) of (CH₃)₂CO upon the complexation are more insignificant than the changes in the vibrational characteristics of HONO-trans and HONO-cis.     

Solution conformational preferences of glutaric, 3‐hydroxyglutaric, 3‐methylglutaric acid,and their mono‐ and dianions

Conformational preferences of glutaric, 3‐hydroxyglutaric and 3‐methylglutaric acid, and their mono‐ and dianions have been investigated with the aid of NMR spectroscopy. In contrast to succinic acid, glutaric acid displays essentially statistical conformational equilibria in polar and non‐polar solutions of high and low hydrogen‐bonding ability with no clear evidence for intramolecular hydrogen‐bonding interactions. The acid ionization constant ratios, K ₁/K₂, in D₂O and DMSO of glutaric, 3‐hydroxyglutaric, and 3‐methylglutaric acids also indicate that intramolecular interactions are much less important than, or indeed insignificant, for shorter‐chain acids. FTIR studies on 3‐methylglutaric acid indicate some preference for either association with solvent or dimerization, depending on the solvent, rather than intramolecular hydrogen bonding. Copyright © 2008 John Wiley & Sons, Ltd.     

Evolution of excess electron binding motifs under both internal‐push (from exo C–F bonds) and external‐push (from endo C–F bonds) electron effects in endohedral metallofullerenes with endo C–F bonds

How does the endo C–F bond influence the excess electron binding motif? For lithium‐doped endohedral perfluorofullerenes with endo C–F bonds, under both internal‐push (from exo C–F bonds) and external‐push (from endo C–F bonds) electron effects, the singly occupied molecular orbital electron cloud of the sphere‐like Li···F₈@C₆₀F₅₂ (D₂) is partially dispersed within the σ_p–s antibonding orbital of endo C–F bonds and the space between C^δ+–F_endo^δ– double electric layers, which makes Li···F₈@C₆₀F₅₂ have partial excess electron (electride characteristics) and partial lithium salt characteristics, while in the tube‐like Li···F₂@C₆₀F₅₈ (C_s), as the Li is changing from approaching F to keeping away from F and to approaching another one, the singly occupied molecular orbital electron cloud is mainly dispersed from within the p orbital of the short endo C–F bond to within the middle of the two F atoms and again to within the p orbital of the short endo C–F bond, which indicates an evolution from lithium salt characteristic to excess electron characteristic, and again to lithium salt characteristic. Copyright © 2012 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and DFT calculations of di‐amino acid cyclic peptides. Part I: cyclo(Gly‐Gly), cyclo(L‐Ala‐L‐Ala) and cyclo(L‐Ala‐Gly) in the solid state and in aqueous solution

Investigations of the vibrational spectra of cyclo(Gly‐Gly), cyclo(L‐Ala‐L ‐Ala) and cyclo(L ‐Ala‐Gly) are reported. Raman scattering and Fourier transform infrared (FTIR) spectra of solid‐state and aqueous protonated samples, as well as their corresponding N‐deuterated isotopomers, have been examined. In addition, density functional theory (DFT) (B3‐LYP/cc‐pVDZ) calculations of molecular structures and their associated vibrational modes were carried out. In each case, the calculated structures of lowest energy for the isolated gas‐phase molecules have boat conformations. Assignments have been made for the observed Raman and FTIR vibrational bands of the cyclic di‐amino acid peptides (CDAPs) examined. Raman polarization studies of aqueous phase samples are consistent with C₂ and C₁ symmetries for the six‐membered rings of cyclo(L‐Ala‐L‐Ala) and cyclo(L‐Ala‐Gly), respectively. There is a good correlation between experimental and calculated vibrational bands for the three CDAPs. These data are in keeping with boat conformations for cyclo(L‐Ala‐L‐Ala) and cyclo(L‐Ala‐Gly) molecules, predicted by the ab initio calculations, in both the solid and aqueous solution states. However, Raman spectroscopic results might infer that cyclo(L‐Ala‐Gly) deviates only slightly from planarity in the solid state. The potential energy distributions of the amide I and II modes of a cis‐peptide linkage are shown to be significantly different from those of the trans‐peptides. For example, deuterium shifts have shown that the cis‐amide I vibrations found in cyclo(Gly‐Gly), cyclo(L‐Ala‐L‐Ala), and cyclo(L‐Ala‐Gly) have larger N‐H contributions compared to their trans‐amide counterparts. Compared to trans‐amide II vibrations, cis‐amide II vibrations show a considerable decrease in N H character. Copyright © 2009 John Wiley & Sons, Ltd.     

XRD studies,vibrational spectra,and molecular structure of 1H‐imidazo [4,5‐b]pyridine based on DFT quantum chemical calculations

The molecular structures and vibrational properties of 1H‐imidazo[4,5‐b]pyridine in its monomeric and dimeric forms are analyzed and compared to the experimental results derived from the X‐ray diffraction (XRD), infrared (IR), and Raman studies. The theoretical data are discussed on the basis of density functional theory (DFT) quantum chemical calculations using Lee–Yang–Parr correlation functional (B3LYP) and 6‐31G(d,p) basis. This compound crystallizes in orthorhombic structure, space group Pna2₁(C_2v⁹) and Z = 4. The planar conformation of the skeleton and presence of the N H···N hydrogen bond was found to be characteristic for the studied system. The temperature dependence of IR and Raman modes was studied in the range 4–294 K and 8–295 K, respectively. The normal modes, which are unique for the imidazopyridine derivatives are identified. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational spectroscopy study of hydrothermally produced scorodite (FeAsO4·2H2O), ferric arsenate sub‐hydrate (FAsH; FeAsO4·0.75H2O) and basic ferric arsenate sulfate (BFAS; Fe[(AsO4)1−x(SO4)x(OH)x]·wH2O)

Three crystalline ferric arsenate phases: (1) scorodite; FeAsO₄·2H₂O, (2) ferric arsenate sub‐hydrate (FAsH; FeAsO₄·0.75H₂O) and (3) basic ferric arsenate sulfate (BFAS; Fe[(AsO₄)_1−x(SO₄)_x(OH)_x]·wH₂O) synthesized by hydrothermal precipitation (175–225 °C) from Fe(III)‐AsO₄³⁻–SO₄²⁻ solutions have been investigated via Raman and infrared spectroscopies. The spectroscopic nature of these high‐temperature Fe(III)‐ AsO₄³⁻–SO₄²⁻ phases has not been extensively studied despite their importance to the hydrometallurgical industrial processing of precious metal (Au and Cu) arsenic sulfidic ores. It was found that scorodite, FAsH and BFAS all gave rise to very distinct arsenate, sulfate and hydroxyl vibrations. In scorodite and FAsH, the distribution of the internal arsenate modes was found to be distinct, with the factor effect being more predominant in the crystal system. For the crystallographically unknown BFAS phase, vibrational spectroscopy was used to monitor the arsenate ↔ sulfate solid solution behavior that occurs in this phase where the molecular symmetry of arsenate and sulfate in the crystal structure is reduced from an ideal T_d to a distorted T_d or C₂/C_2v symmetry. With the new collected vibrational data of the pure phases, the use of attenuated total reflectance infrared (ATR‐IR) spectroscopy was finally extended to investigate the nature of the arsenate in an industrial residue generated by pressure oxidation of a gold ore, where it was found that the arsenate was present in the form of BFAS. Copyright © 2009 John Wiley & Sons, Ltd.     

Nitrosation of dialkylhydroxylamines,and computational and NMR investigations of the interconversion of conformational isomers of N‐nitroso‐dimethylhydroxylamine

The effect of acidity upon the rate of nitrosation of N‐benzyl,O‐methylhydroxylamine ( 3 ) in 1:1 (v/v) H₂O/MeOH at 25 °C has been investigated. The pseudo‐first‐order rate constant (k_obs) for loss of HNO₂ as the limiting reagent decreases as [H₃O⁺] increases. This is compatible with two parallel reaction channels (Scheme 2 ). One involves the direct reaction of the free hydroxylamine with HNO₂ (k₁ = 1.4 × 10² dm³ mol^?1 s^?1, 25 °C) and the other involves the reaction of the free hydroxylamine with NO⁺ (k₂ = 5.9 × 10⁹ dm³ mol^?1 s^?1). In contrast, there is only a very slight increase in k_obs with increasing [H₃O⁺] for nitrosation of N,O‐dimethylhydroxylamine ( 4 ) in dilute aqueous solution at 25 °C to give N‐nitroso‐dimethylhydroxylamine, 5 . This also fits a two‐channel mechanism (Scheme 3 ). Again, one involves the nitrosation of the free base by NO⁺ (k₂ = 8 × 10⁹ dm³ mol^?1 s^?1, 25 °C) but the other channel now involves catalysis by chloride (k₃ = 1.3 × 10⁸ dm³ mol^?1 s^?1). Arising from these results, we propose an estimate of pK_a ～ ?5 for protonated nitrous acid, (O = N? OH), which is appreciably different from the literature value of +1.7. The interconversion of cis and trans conformational isomers of 5 has been investigated by temperature‐dependent NMR spectroscopy in CDCl₃, methanol‐d₄, toluene‐d₈ and dimethyl sulfoxide‐d₆. Enthalpies and entropies of reaction and of activation have been determined and compared with computational values obtained at the B3LYP/6‐31G* level of theory. The cis form is slightly more stable at normal temperatures and no solvent effects upon the thermodynamics or kinetics of the conformational equilibrium were predicted computationally or detected experimentally. In addition, key geometric parameters and dipole moments have been calculated for the cis and trans forms, and for the lowest energy transition structure for their interconversion, in the gas phase and in chloroform. These results indicate electronic delocalisation in the ground states of 5 which is lost in the transition structure for their interconversion. Copyright © 2010 John Wiley & Sons, Ltd.     

Long distance structural consequences of H‐bonding: the case of complexes of para‐substituted phenol derivatives

H‐bonded complexes of p‐X‐PhOH/p‐X‐PhO^? with fluoride and hydrofluoric acid (X = OH, H, NO₂) were subject of optimization (by means of B3LYP/6‐311+G**) for gradually changed O···F distance from d_O···F = 4.0 Å down to (i) the distance of the proton transfer from the hydroxyl group to fluoride leading to O^?···HF interaction and (ii) fully optimized system (O^?···HF type). In this way, we simulate gradual changes of H‐bond strength estimating simultaneously the energy of interaction, E_int, energy of deformation, E_def, and the binding energy, E_tot. The obtained geometrical parameters allow us to show that H‐bond formation causes substantial changes in geometry, even at so distant parts of the system as the ring and bond length in para‐substituents (OH and NO₂). All these changes are monotonically dependent on interaction and deformation energies. Copyright © 2009 John Wiley & Sons, Ltd.     

Substituent effects on gas‐phase homolytic Fe–N bond energies of m‐G‐C6H4NHFe(CO)2(η5‐C5H5) and m‐G‐C6H4N(COMe)Fe(CO)2(η5‐C5H5) studied using density functional theory methods

One of the most fundamental properties in chemistry is the bond dissociation energy, the energy required to break a specific bond of a molecule. In this paper, the Fe–N homolytic bond dissociation energies [ΔH_homo(Fe–N)'s] of 2 series of (meta‐substituted anilinyl)dicarbonyl(η⁵‐cyclopentadienyl) iron [m‐G‐C₆H₄NHFp ( 1 )] and (meta‐substituted α‐acetylanilinyl)dicarbonyl(η⁵‐cyclopentadienyl) iron [m‐G‐C₆H₄N(COMe)Fp ( 2 )] were studied using density functional theory methods with large basis sets. In this study, Fp is (η⁵‐C₅H₅)Fe(CO)₂, and G is NO₂, CN, COMe, CO₂Me, CF₃, Br, Cl, F, H, Me, MeO, and NMe₂. The results show that Tao‐Perdew‐Staroverov‐Scuseria, Minnesota 2006, and Becke's power‐series ansatz from 1997 with dispersion corrections functionals can provide the best price/performance ratio and accurate predictions of ΔH_homo(Fe–N)'s. The ΔΔH_homo(Fe–N)'s ( 1 and 2 ) conform to the captodative principle. The polar effects of the meta‐substituents show the dominant role to the magnitudes of ΔΔH_homo(Fe–N)'s. σ_α· and σ_c· values for meta‐substituents are all related to polar effects. Spin‐delocalization effects of the meta‐substituents in ΔΔH_homo(Fe–N)'s are small but not necessarily zero. RE plays an important role in determining the net substituent effects on ΔH_homo(Fe–N)'s. Insight from this work may help the design of more effective catalytic processes.     

Raman spectroscopic characterization of a thiophene‐based active material for resistive organic nonvolatile memories

A combined theoretical and experimental Raman study is presented on a diphenyl bithiophene molecule known as a good candidate for the development of organic nonvolatile memory devices. Spectroscopic markers suitable to distinguish the different stable conformers of the molecule have been predicted and detected. The combined analysis of theoretical and experimental Raman spectra recorded in solution indicates that at room temperature a dynamical equilibrium, characterized by interconversion between the two more stable conformers (namely trans and cis), takes place and that the more populated species is the cis form. Referring to the solid phase instead, Raman spectra of single‐crystal samples show the presence of the only trans conformer, as confirmed by X‐ray measurements. Finally, Raman spectra of thin films, as those used for the memory device, were collected; samples just deposited from solution and after few hours from the deposition were analyzed. Following the evolution of selective spectroscopic Raman markers, an isomerization process from the abundant cis (as‐deposited) to the totally trans (after few hours) conformer in the solid phase was detected. These results open the way to the identification of the molecular isomers present in the thin film of the memory cell and finally of the active molecular species involved in the switching mechanism of the operating device. Copyright © 2009 John Wiley & Sons, Ltd.     

Extended X‐ray absorption fine structure and multiple‐scattering simulation of nickel dithiolene complexes Ni[S2C2(CF3)2]2n (n = −2, −1, 0) and an olefin adduct Ni[S2C2(CF3)2]2(1‐hexene)

A series of Ni dithiolene complexes Ni[S₂C₂(CF₃)]₂ⁿ (n = ?2, ?1, 0) ( 1 , 2 , 3 ) and a 1‐hexene adduct Ni[S₂C₂(CF₃)₂]₂(C₆H₁₂) ( 4 ) have been examined by Ni K‐edge X‐ray absorption near‐edge structure (XANES) and extended X‐ray absorption fine‐structure (EXAFS) spectroscopies. Ni XANES for 1 – 3 reveals clear pre‐edge features and approximately +0.7 eV shift in the Ni K‐edge position for `one‐electron' oxidation. EXAFS simulation shows that the Ni—S bond distances for 1 , 2 and 3 (2.11–2.16 Å) are within the typical values for square planar complexes and decrease by ～0.022 Å for each `one‐electron' oxidation. The changes in Ni K‐edge energy positions and Ni—S distances are consistent with the `non‐innocent' character of the dithiolene ligand. The Ni—C interactions at ～3.0 Å are analyzed and the multiple‐scattering parameters are also determined, leading to a better simulation for the overall EXAFS spectra. The 1‐hexene adduct 4 presents no pre‐edge feature, and its Ni K‐edge position shifts by ?0.8 eV in comparison with its starting dithiolene complex 3 . Consistently, EXAFS also showed that the Ni—S distances in 4 elongate by ～0.046 Å in comparison with 3 . The evidence confirms that the neutral complex is `reduced' upon addition of olefin, presumably by olefin donating the π‐electron density to the LUMO of 3 as suggested by UV/visible spectroscopy in the literature.     

Effects of conformation and hydrogen bonding on the CC and NCN stretching Raman bands of N‐deuterated histidinium

Histidine is an important and versatile amino acid residue that plays a variety of structural and functional roles in proteins. Although the Raman bands of histidine are generally weak, histidine in the N‐deuterated cationic form with imidazole N_π D and N_τ D bonds (N‐deuterated histidinium) gives two strong Raman bands assignable to the C₄C₅ stretch (ν_CC) and the N_π C₂ N_τ symmetric stretch (ν_NCN) of the imidazole ring. We examined the Raman spectra of N‐deuterated histidinium in 12 crystals with known structures. The observed ν_CC and ν_NCN wavenumbers were analyzed to find empirical correlations with the conformation and hydrogen bonding. The effect of conformation on the vibrational wavenumber was expressed as a threefold cosine function of the C_α C_β C₄C₅ torsional angle. The effect of hydrogen bonding at N_π or N_τ was assumed to be proportional to the inverse sixth power of the distance between the hydrogen and acceptor atoms. Multiple linear regression analysis clearly shows that the conformational effect on the vibrational wavenumber is comparable for ν_CC and ν_NCN. The hydrogen bond at N_π weakly lowers the ν_CC wavenumber and substantially raises the ν_NCN wavenumber. On the other hand, the hydrogen bond at N_τ strongly raises the ν_CC wavenumber but does not affect the ν_NCN wavenumber. These empirical correlations may be useful in Raman spectral analysis of the conformation and hydrogen bonding states of histidine residues in proteins. Copyright © 2010 John Wiley & Sons, Ltd.     

The equilibrium and kinetics of intermolecular hydrogen bonding in nitroarene anion radical–alcohol system: 1,3‐dinitro‐benzene anion radical – R–OH (R═CH3–, C2H5–, (CH3)2 CH–)

To explore the possibility of hydrogen bonding of a stable anion radical with DNA – component sugar, hormones, steroid, and so on (through hydroxyl group), as a first step, the possibility of hydrogen bonding of 1,3‐dinitrobenzene anion radical (1,3‐DNB^??) with aliphatic alcohols was studied. It was found that 1,3‐DNB^?? anion radical undergoes hydrogen bonding with alcohols: methanol, ethanol, and 2‐proponal. The hydrogen‐bonding equilibrium constant K_eq and the (hydrogen‐bonding) rate constants k₂ were evaluated through the use of linear scan and cyclic voltammetry theory and techniques. The K_eq was found to be in the range of 1.4–6.0 m ^?1, whereas the rate constants k₂ were found to be in the range of 1.5–3.6 m ^?1 s^?1, depending upon the hydrogen‐bonding agent and the equation used for the calculation of the rate constants. The hydrogen‐bonding number n was found to be around 0.5 or 1.0. The implication of this study in, for example, the replication of DNA, the prevention of the formation of super oxide, and so on is discussed. Copyright © 2012 John Wiley & Sons, Ltd.