Vibrational dynamics of amorphous beryllium hydride and lithium beryllium hydrides

The vibrational density of states of amorphous beryllium hydride (a-BeH2) and lithium beryllium hydrides have been studied using inelastic neutron scattering, infrared, and Raman spectroscopies. The positions of the symmetrical (120-180 meV) and antisymmetrical (200-260 meV) Be-H stretching modes and those of the H-Be-H bending mode (50-120 meV) have been determined and the results discussed and compared with recent theoretical calculations. With the addition of lithium to the beryllium hydride network, the vibrational bands are shifted to lower energies, indicating a less rigid network.     

Density functional theory studies on the electronic and vibrational spectra of octaethylporphyrin diacid

The ground-state structure and electronic and vibrational spectra of octaethylporphyrin diacid (H4OEP2+) have been studied with the density functional theory. The geometrical parameters computed with B3LYP, PBE1PBE and mPW1PW91 functionals and 6-31G* basis sets are well consistent with the experimental values. Electronic absorption spectrum of H4OEP2+ has been studied with the time-dependent DFT method, and the calculated excitation energies and oscillator strengths are compared with the experimental results. The Raman and IR spectra of H4OEP2+ and the Raman spectrum of its N-deuterated analogue (D4OEP2+) were measured. The observed Raman and IR bands have been assigned based on the frequency calculations at the B3LYP/6-31G* level of theory.     

Experimental and theoretical investigation of the molecular and electronic structure of anticancer drug camptothecin

The Fourier Transform Infrared spectrum of (S)-4 ethyl-4-hydroxy-1H-pyrano [3',4':6,7]-indolizino-[1,2-b-quinoline-3,14-(4H,12H)-dione] [camptothecin] was recorded in the region 4000-400 cm(-1). The Fourier Transform Raman spectrum of camptothecin (CPT) was also recorded in the region 3500-50 cm(-1). Quantum chemical calculations of geometrical structural parameters and vibrational frequencies of CPT were carried out by MP2/6-31G(d,p) and density functional theory DFT/B3LYP/6-311++G(d,p) methods. The assignment of each normal mode has been made using the observed and calculated frequencies, their IR and Raman intensities. The harmonic vibrational frequencies were calculated and the scaled values have been compared with experimental FT-IR and FT-Raman spectra. Most of the computed frequencies were found to be in good agreement with the experimental observations. The isotropic chemical shifts computed by (13)C and (1)H NMR analysis also show good agreement with experimental observations. Comparison of calculated spectra with the experimental spectra provides important information about the ability of computational method to describe the vibrational modes of large sized organic molecule.     

Conformational study of (R)-(+)-limonene in the liquid phase using vibrational spectroscopy (IR,Raman, and VCD) and DFT calculations

A conformational study in the liquid phase of the terpene (R)-(+)-limonene has been carried out, revealing the presence of three conformers. For this task, experimental vibrational techniques, such as IR, Raman, and VCD spectroscopies, together with quantum chemical calculations, have been used. Our study reveals that a previous vibrational analysis is desirable to achieve a thorough analysis of the VCD spectrum as well as that these three experimental techniques are complementary to characterize flexible systems, which present several conformers.     

Synthesis, FTIR, FT-Raman, UV-visible, ab initio and DFT studies on benzohydrazide

A systematic vibrational spectroscopic assignment and analysis of benzohydrazide (BH) has been carried out by using FTIR and FT-Raman spectral data. The vibrational analysis were aided by electronic structure calculations--ab initio (RHF) and hybrid density functional methods (B3LYP and B3PW91) performed with 6-31G(d,p) and 6-311++G(d,p) basis sets. Molecular equilibrium geometries, electronic energies, IR intensities, harmonic vibrational frequencies, depolarization ratios and Raman activities have been computed. Potential energy distribution (PED) and normal mode analysis have also been performed. The assignments proposed based on the experimental IR and Raman spectra have been reviewed and complete assignment of the observed spectra have been proposed. UV-visible spectrum of the compound was also recorded and the electronic properties, such as HOMO and LUMO energies and λ(max) were determined by time-dependent DFT (TD-DFT) method. The geometrical, thermodynamical parameters and absorption wavelengths were compared with the experimental data. The interactions of carbonyl and hydrazide groups on the benzene ring skeletal modes were investigated.     

Vibrational spectroscopic study of the hypophosphite and phosphite anions,H2PO2−2 and HPO2−3, and of their deuteriated analogues in the solid state and in aqueous solution

A full vibrational spectroscopic study of sodium hypophosphite, sodium phosphite and their deuteriated analogues has been made. The vibrations characteristic of the hypophosphite anion have been assigned and the presence of a previously unreported band has been established for the Raman spectrum of the aqueous solution. The first Raman study of deuteriated sodium phosphite has been undertaken and a full vibrational assignment is given.     

RESONANCE RAMAN AND SURFACE-ENHANCED RESONANCE RAMAN SPECTROSCOPY OF HYPERICIN

Hypericin has been found to exhibit a variety of photodynamic effects. To correlate biological activity with molecular structure, complete physical characterization of hypericin is required. The vibrational spectrum has been determined and resonance Raman and surface enhanced resonance Raman scattering spectra are reported. In addition, the Raman spectrum of a model compound has been studied to facilitate assignment of the vibrational modes of hypericin.     

Vibrational raman spectroscopic study of scytonemin, the UV-protective cyanobacterial pigment

The Raman spectrum of the photoprotective pigment scytonemin found in cyanobacterial sheaths has been obtained for the first time. Its skeletal structure is extensively conjugated and unique in nature. Detailed molecular vibrational assignments are proposed and a distinctive group of four corroborative vibrational bands have been identified as unique indicators for the compound. These bands, especially a prominent feature at wavenumber 1590 cm(-1), are sufficiently conspicuous to be detectable in the mixed biomolecular pools of undisturbed natural microbial communities. This has been confirmed by demonstrating the Raman spectral bands for scytonemin in a sample of an intact intertidal cyanobacterial mat.     

Revised vibrational band assignments for the experimental IR and Raman spectra of 2,3,4-trifluorobenzonitrile based on ab initio, DFT and normal coordinate calculations

In the present study, a systematic vibrational spectroscopic investigation for the experimental IR and Raman spectra of 2,3,4-trifluorobenzonitrile (TFB), aided by electronic structure calculations has been carried out. The electronic structure calculations – ab initio (RHF) and hybrid density functional methods (B3LYP) – have been performed with 6-31G* basis set. Molecular equilibrium geometries, electronic energies, IR intensities, harmonic vibrational frequencies, depolarization ratios and Raman activities have been computed. The results of the calculations have been used to simulate IR and Raman spectra for TFB that showed excellent agreement with the observed spectra. Potential energy distribution (PED) and normal mode analysis have also been performed. The assignments proposed based on the experimental IR and Raman spectra have been reviewed. A complete assignment of the observed spectra has been proposed.     

Raman scattering study of toluene vibrational relaxation in benzene-toluene liquid system

The polarizes and depolarized profiles of the 520 cm^?1 Raman line of toluene in benzene solutions have been measured as a function of concentration. The vibrational correlation functions were obtained by Fourier inversion of Raman band contours. The concentration dependence of the experimental vibrational correlation time has been compared with that computed from the Fischer-Laubereau vibrational dephasing model modified for use in binary mixtures.     

IR, Raman and SERS spectra of disodium terephthalate

The IR and Raman spectra of disodium terephthalate were recorded and analysed. Surface enhanced Raman scattering (SERS) spectrum was recorded in silver colloid. The vibrational wavenumber of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values. SERS studies suggest a flat orientation of the molecule at the metal surface.     

Ab initio spectrograms of the molecular vibrational spectrum

Theoretical spectrograms of the vibrational spectrum of 3,3-dimethylcyclopropene were constructed and juxtaposed with the experimental Raman and IR spectrograms. The theoretical spectrograms are represented as sets of vertical lines starting from the points corresponding to the values of the vibrational frequencies calculated from the scaled quantum-mechanical (QM) force field obtained at the HF/6-31G*//HF/6-31G* level. Two theoretical Raman spectrograms were constructed. In the first case, the heights of the vertical lines correspond to the QM values of the Raman scattering activities. In the second case they represent the relative differential Raman cross-sections calculated using the QM values of Raman scattering activities. The initial vibrational mode matrix remains virtually unchanged upon scaling of the QM force constant matrix because the dispersion of the scale factor values is low. Therefore, the heights of the theoretical lines for the IR spectrogram represent the QM intensities directly. The theoretical spectrogram based on the relative differential Raman cross-sections was shown to depict the experimental Raman spectrum more adequately. This makes it possible to use the results of the corresponding QM calculations more completely and obtain well-substantiated assignments of the vibrational frequencies.     

IR, Raman and SERS studies of methyl salicylate

The IR and Raman spectra of methyl salicylate (MS) were recorded and analysed. Surface enhanced Raman scattering (SERS) spectrum was recorded in silver colloid. The vibrational wave numbers of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values. SERS studies suggest a flat orientation of the molecule at the metal surface.     

Vibrational spectroscopy of liquid crystals : 2. Normal coordinate analysis of benzaniline: basis structure for some liquid crystals

The vibrational spectrum of benzalaniline, some derivatives of which have been found to exhibit crystalline properties in the liquid phase, has been interpreted in the light of new experimental data and from an accurate normal coordinate calculation. Kinematic and dynamic couplings are of great importance even for the modes corresponding to the central group. A modified Urey-Bradley force field refined on three isotopic species of benzene has been determined.

In the course of studies on the vibrational spectra of nematogenic Schiff bases, it has been found that the complete vibrational assignment of the parent molecule, benzaniline or benzylidene-aniline (B.A.) has never been reported. In a previous report [1], one of us (G.V.) showed the similarity in the Raman spectra of B.A. and (methoxy)-benzylidene-(butyl)-aniline (M.B.B.A.) which is a nematic type liquid crystal. For structural studies of the nematic phase itself and for the use of liquid crystals as solvents in vibrational spectroscopie studies of solute molecules, one needs to know the full assignment. The purpose of the present paper is to discuss the interpretation of the vibrational spectrum of B.A. in the light of new experimental data and from an accurate normal coordinate calculation.     

FT-IR, FT-Raman spectra and ab initio DFT vibrational analysis of p-bromophenoxyacetic acid

The Fourier transform Raman and Fourier transform infrared spectra of p-bromophenoxyacetic acid were recorded in the solid phase. The equilibrium geometry, harmonic vibrational frequencies, infrared intensities and Raman scattering activities were calculated by HF and DFT (B3LYP) method with the 6-31G(d,p) basis set. The scaled theoretical wavenumbers showed very good agreement with the experimental ones. A detailed interpretation of the infrared and Raman spectra of p-bromophenoxyacetic acid is reported on the basis of the calculated potential energy distribution. The theoretical spectrograms for the IR spectrum of the title molecule have been constructed.     

Structure and Raman spectrum of clavulanic acid in aqueous solution

The calculation of the vibrational Raman spectrum of enzyme-bound beta-lactamase inhibitors may be of help to understand the mechanisms responsible for bacterial drug resistance. Here, we present a study of the solvation structure and the vibrational properties of clavulanate, an important beta-lactamase inhibitor, in aqueous solution as obtained from full quantum and hybrid empirical/quantum molecular dynamics simulations at ambient conditions. The analysis of the vibrational density of states indicates that hybrid empirical/quantum mechanical simulations are able to properly describe the vibrational levels of clavulanate in solution. In addition, we propose a computationally efficient protocol to calculate the vibrational Raman effect for large solute molecules in water, which is able to faithfully reproduce the experimentally recorded clavulanate Raman spectrum and discloses the possibility to employ hybrid simulations to assign the experimental Raman spectra of inhibitors bound to beta-lactamases.     

Theoretical prediction of the Infrared and Raman spectra of O-ethyl S-2-diisopropylaminoethylmethylphosphonothiolate

We have extended our computations of the structure and of the infrared and Raman spectra of methylphosphonates and related compounds to the O-ethyl S-2-diisopropylaminoethylmethylphosphonothiolate molecule (we abbreviate the name to ESD). We have computed the optimized geometry and the vibrational infrared and Raman frequencies of ESD by means of the Guassian 92 Program Package using 6–31G * basis sets. We assign the vibrational frequencies and we correct each frequency by multiplying it with a previously derived 6–31G * correction factor. The result is a computer-generated prediction of the IR and Raman spectra of ESD . The agreement between our theoretical predictions and the experimental IR spectrum of ESD is surprisingly good. © 1994 John Wiley & Sons, Inc.     

Theoretical calculation and vibrational spectral analysis of L-arginine trifluoroacetate

Fourier transform infrared and Raman spectra of the nonlinear optical crystal, L-arginine trifluoroacetate (L-arginine.CF3COOH, abbreviated as LATF) have been calculated by the first-principles calculation and investigated in experiment. The calculated results are slightly different from those experimental values because of the distinction resulted from the intermolecular hydrogen bonds. The role of this type of intermolecular interaction on the crystal vibrational spectra and nonlinear optical properties has been discussed. The absorption-edge on the IR side has been estimated by the theoretical approach on basis of the calculated infrared spectrum, which will be meaningful for further research on NLO crystal.     

Biomedical Vibrational Spectroscopy in the Era of Artificial Intelligence

Biomedical vibrational spectroscopy has come of age. The past twenty years have brought many advancements and new developments and now its practitioners face a new challenge: artificial intelligence. Artificial intelligence has the capability to detect meaningful relationships in data sets such as those found in an infrared or Raman spectrum. The present narrative assesses the degree to which biomedical vibrational spectroscopy has already embraced artificial intelligence and what can be expected going forward. This article belongs to the Special Issue Biomedical Applications of Infrared and Raman Spectroscopy.