Halogenotrinitromethanes: A Combined Study in the Crystalline and Gaseous Phase and Using Quantum Chemical Methods

The halogenotrinitromethanes FC(NO₂)₃ ( 1 ), BrC(NO₂)₃ ( 2 ), and IC(NO₂)₃ ( 3 ) were synthesized and fully characterized. The molecular structures of 1 – 3 were determined in the crystalline state by X‐ray diffraction, and gas‐phase structures of 1 and 2 were determined by electron diffraction. The Hal?C bond lengths in F?, Cl?, and Br?C(NO₂)₃ in the crystalline state are similar to those in the gas phase. The obtained experimental data are interpreted in terms of Natural Bond Orbitals (NBO), Atoms in Molecules (AIM), and Interacting Quantum Atoms (IQA) theories. All halogenotrinitromethanes show various intra‐ and intermolecular non‐bonded interactions. Intramolecular N ??? O and Hal ??? O (Hal=F ( 1 ), Br ( 2 ), I ( 3 )) interactions, both competitors in terms of the orientation of the nitro groups by rotation about the C?N bonds, lead to a propeller‐type twisting of these groups favoring the mentioned interactions. The origin of the unusually short Hal?C bonds is discussed in detail. The results of this study are compared to the molecular structure of ClC(NO₂)₃ and the respective interactions therein.     

Experimental Charge Density Evidence for Pnicogen Bonding in a Crystal of Ammonium Chloride

Chemical binding in crystalline ammonium chloride, a simple inorganic salt with an unexpectedly complex bonding pattern, was studied by using a topological analysis of electron density function derived from high‐resolution X‐ray diffraction. Supported by periodic quantum chemical calculations, it provided experimental evidence for weak σ‐hole bonds (1.5 kcal mol^?1) that involve ammonium cations in a crystal. Our results show this type of supramolecular interaction to be more numerous than has been found to date by using gas‐phase calculations or statistical analysis of CSD.     

Charge density and experimental electrostatic potentials of two penicillin derivatives

Two penicillin derivatives, the active penamecillin and the inactive penamecillin-1beta-sulfoxide, were used to study the relationship between their charge density and their activity. Single crystals of both compounds were measured at the synchrotron beamline F1 at the HASYLAB/DESY, at 100 K and up to resolutions of around 0.4 A. Experimental charge densities were obtained by using the Hansen-Coppens multipole formalism. The cleavage of the amide bond in the beta-lactam ring is of paramount importance in the mechanism of action of penicillins. Topological analysis of this bond in terms of Bader's AIM theory showed that its strength is equal in both compounds; therefore a direct influence of bond strength on the activity can be ruled out. However, the two derivatives differ significantly in their experimental electrostatic potentials. These differences are discussed and provide further insight into the chemistry and activity of penicillins.     

Anharmonic Thermal Motion Modelling in the Experimental XRD Charge Density Determination of 1-Methyluracil at T = 23 K

The experimental electron density distribution (EDD) of 1-methyluracil (1-MUR) was obtained by single crystal X-ray diffraction (XRD) experiments at 23 K. Four different structural models fitting an extensive set of XRD data to a resolution of (sinθ/λ)_max = 1.143 Å⁻¹ are compared. Two of the models include anharmonic temperature factors, whose inclusion is supported by the Hamilton test at a 99.95% level of confidence. Positive Fourier residuals up to 0.5 eÅ^–3 in magnitude were found close to the methyl group and in the region of hydrogen bonds. Residual density analysis (RDA) and molecular dynamics simulations in the solid-state demonstrate that these residuals can be likely attributed to unresolved disorder, possibly dynamical and long–range in nature. Atomic volumes and charges, molecular moments up to hexadecapoles, as well as maps of the molecular electrostatic potential were obtained from distributed multipole analysis of the EDD. The derived electrostatic properties neither depend on the details of the multipole model, nor are significantly affected by the explicit inclusion of anharmonicity in the least–squares model. The distribution of atomic charges in 1-MUR is not affected by the crystal environment in a significant way. The quality of experimental findings is discussed in light of in-crystal and gas-phase quantum simulations.     

The Dark Side of Hydrogen Bonds in the Design of Optical Materials: A Charge‐Density Perspective

A combined investigation of the structural, electronic, and optical properties of three crystalline nonaaqualanthanoid(III) triflates, [Ln(H₂O)₉(CF₃SO₃)₃], has provided unambiguous experimental evidence for charge redistribution in the first coordination sphere of a lanthanide ion as a result of hydrogen bonds with outer‐sphere anions. As well as resulting in charge transfer from the noncoordinated anions to the coordinated water molecules, these hydrogen bonds give rise to a new excited state, an hydrogen‐bond‐induced charge‐transfer state, which is observed experimentally for the first time. This state was shown to be responsible for the previously unknown negative aspect of hydrogen bonds with a lanthanide‐bound water molecule: rather than increasing the luminescence efficiency of the complex, they can lead to additional quenching that is unfavorable for the task‐specific design of optical materials.     

Octahedral adducts of dichlorosilane with substituted pyridines: synthesis, reactivity and a comparison of their structures and (29)si NMR chemical shifts

H(2)SiCl(2) and substituted pyridines (Rpy) form adducts of the type all-trans-SiH(2*)Cl(2)2 Rpy. Pyridines with substituents in the 4- (CH(3), C(2)H(5), H(2)C=CH, (CH(3))(3)C, (CH(3))(2)N) and 3-positions (Br) give the colourless solids 1 a-f. The reaction with pyrazine results in the first 1:2 adduct (2) of H(2)SiCl(2) with an electron-deficient heteroaromatic compound. Treatment of 1 d and 1 e with CHCl(3) yields the ionic complexes [SiH(2)(Rpy)(4)]Cl(2*)6 CHCl(3) (Rpy=4-methylpyridine (3 d) and 4-ethylpyridine (3 e)). All products are investigated by single-crystal X-ray diffraction and (29)Si CP/MAS NMR spectroscopy. The Si atoms are found to be situated on centres of symmetry (inversion, rotation), and the Si-N distances vary between 193.3 pm for 1 c (4-(dimethylamino)pyridine complex) and 197.3 pm for 2. Interestingly, the pyridine moieties are coplanar and nearly in an eclipsed position with respect to the SiH(2) units, except for the ethyl-substituted derivative 1 e, which shows a more staggered conformation in the solid state. Calculation of the energy profile for the rotation of one pyridine ring indicates two minima that are separated by only 1.2 kJ mol(-1) and a maximum barrier of 12.5 kJ mol(-1). The (29)Si NMR chemical shifts (delta(iso)) range from -145.2 to -152.2 ppm and correlate with the electron density at the Si atoms, in other words with the +I and +M effects of the substituents. Again, compound 1 e is an exception and shows the highest shielding. The bonding situation at the Si atoms and the (29)Si NMR tensor components are analysed by quantum chemical methods at the density functional theory level. The natural bond orbital analysis indicates polar covalent Si-H bonds and very polar Si-Cl bonds, with the highest bond polarisation being observed for the Si-N interaction, which must be considered a donor-acceptor interaction. An analysis of the topological properties of the electron distribution (AIM) suggests a Lewis structure, thereby supporting this bonding situation.     

Charge‐Scaling Effect in Ionic Liquids from the Charge‐Density Analysis of N,N′‐Dimethylimidazolium Methylsulfate

The charge scaling effect in ionic liquids was explored on the basis of experimental and theoretical charge‐density analyses of [C₁MIM][C₁SO₄] employing the quantum theory of atoms in molecules (QTAIM) approach. Integrated QTAIM charges of the experimental (calculated) charge density of the cation and anion resulted in non‐integer values of ±0.90 (±0.87) e. Efficient charge transfer along the bond paths of the hydrogen bonds between the imidazolium ring and the anion was considered as the origin of these reduced charges. In addition, a detailed QTAIM analysis of the bonding situation in the [C₁SO₄]^? anion revealed the presence of negative π_O→σ*_S‐O hyperconjugation.     

Understanding the formation and evolution of ceria nanoparticles under hydrothermal conditions

Supercritical growth: The formation and evolution of ceria nanoparticles during hydrothermal synthesis was investigated by in?situ total scattering and powder diffraction. The nucleation of pristine crystalline ceria nanoparticles originated from previously unknown cerium dimer complexes. The nanoparticle growth was highly accelerated under supercritical conditions.     

Synthesis and Characterization of Two Formyl 2‐Tetrazenes

The synthesis of two formyl 2‐tetrazenes, namely, (E)‐1‐formyl‐1,4,4‐trimethyl‐2‐tetrazene ( 2 ) and (E)‐1,4‐diformyl‐1,4‐dimethyl‐2‐tetrazene ( 3 ), by oxidation of (E)‐1,1,4,4‐tetramethyl‐2‐tetrazene ( 1 ) using potassium permanganate in acetone solution is presented. Compound 3 was also synthesized in an improved yield from the oxidation of 1‐formyl‐1‐methylhydrazine ( 4a ) using potassium permanganate in acetone. Both compounds 2 and 3 were characterized by analytical (elemental analysis, GC‐MS) and spectroscopic methods (¹H, ¹³C, and ¹⁵N NMR spectroscopy, and IR and Raman spectroscopy). In addition, the solid‐state structures of the compounds were confirmed by low‐temperature X‐ray analysis. (Compound 2 : triclinic; space group P‐1; a=5.997(1) Å, b=8.714(1) Å, c=13.830(2) Å; α=107.35(1)°, β=90.53(1)°, γ=103.33(1)°; V_UC=668.9(2) ų; Z=4; ρ_calc=1.292 cm^?3. Compound 3 : monoclinic; space group P2₁/c; a=5.840(2) Å, b=7.414(3) Å, c=8.061(2) Å; β=100.75(3)°; V_UC=342(2) ų; Z=2; ρ_calc=1.396 g cm^?3.) The vibrational frequencies of compounds 2 and 3 were calculated using the B3LYP method with a 6‐311+G(d,p) basis set. We also computed the natural bond orbital (NBO) charges using the rMP2/aug‐cc‐pVDZ method and the heats of formation were determined on the basis of their electronic energies. Furthermore, the thermal stabilities of these compounds, as well as their sensitivity towards classical stimuli, were also assessed by differential scanning calorimetry and standard BAM tests, respectively. Lastly, the attempted synthesis of (E)‐1,2,3,4‐tetraformyl‐2‐tetrazene ( 6 ) is also discussed.     

Environmentally Friendly γ‐MnO2 Hexagon‐Based Nanoarchitectures: Structural Understanding and Their Energy‐Saving Applications

Although about 200,000 metric tons of γ‐MnO₂ are used annually worldwide for industrial applications, the γ‐MnO₂ structure is still known to possess a highly ambiguous crystal lattice. To better understand the γ‐MnO₂ atomic structure, hexagon‐based nanoarchitectures were successfully synthesized and used to elucidate its internal structure for the present work. The structural analysis results, obtained from the hexagon‐based nanoarchitectures, clearly show the coexistence of akhtenskite (ε‐MnO₂), pyrolusite (β‐MnO₂), and ramsdellite in the so‐called γ‐MnO₂ phase and verified the heterogeneous phase assembly of the γ‐MnO₂ state, which violates the well‐known “De Wolff” model and derivative models, but partially accords with Heuer's results. Furthermore, heterogeneous γ‐MnO₂ assembly was found to be a metastable structure under hydrothermal conditions, and the individual components of the heterogeneous γ‐MnO₂ system have structural similarities and a high lattice matches with pyrolusite (β‐MnO₂). The as‐obtained γ‐MnO₂ nanoarchitectures are nontoxic and environmentally friendly, and the application of such nanoarchitectures as support matrices successfully mitigates the common problems for phase‐change materials of inorganic salts, such as phase separation and supercooling‐effects, thereby showing prospect in energy‐saving applications in future “smart‐house” systems.     

Progress in the understanding of drug-receptor interactions, Part 1: experimental charge-density study of an angiotensin II receptor antagonist (C30H30N6O3S) at T = 17 K

An experimental study of the electron-density distribution rho(r) in an angiotensin II receptor antagonist 1 has been made on the basis of single-crystal X-ray diffraction data collected at a low temperature. The crystal structure of 1 consists of infinite ribbons in which molecules are connected by an N-H...N hydrogen bond and several interactions of the C-H...O, C-H...N, and C-H...S type. The molecular conformation, characterized by the syn orientation of a tetrazole and a pyrimidinone ring with respect to a phenyl spacer group, is stabilized by two short SO and SN intramolecular contacts between a substituted thiophene fragment and the other two heterocycles of 1. The electrostatic nature of these interactions is documented. Furthermore, the Laplacian of rho(r) in the plane defined by the sulfur, oxygen, and nitrogen atoms involved in these interactions shows their strongly directional character as the regions of charge concentration on the valence shell of the nitrogen and oxygen atoms directly face the regions of charge depletion on the valence shell of the sulfur atom. All the chemical bonds and the relevant intra- and intermolecular interactions of 1 have been quantitatively described by the topological analysis of rho(r). Simple relationships between the bond path lengths (R(b)) and the values of rho at the bond critical points (rho(bcp)) have been obtained for the 28 C-C bonds, the seven N-C bonds, and the four O-C bonds. For the first two classes of bonds the relationship is in the form of a straight line, whose parameters, for the C-C bonds, agree, within experimental uncertainty, with those previously derived in our laboratory from a 19 K X-ray diffraction study of crystals of a different compound. Maps of the molecular electrostatic potential phi(r) derived from the experimental charge density display features that are important for the drug-receptor recognition of 1.     

Experimental and Computational Probes of the Nature of Halogen Bonding: Complexes of Bromine‐Containing Molecules with Bromide Anions

The nature of halogen bonding is examined via experimental and computational characterizations of a series of associates between electrophilic bromocarbons R? Br (R? Br=CBr₃F, CBr₃NO₂, CBr₃COCBr₃, CBr₃CONH₂, CBr₃CN, etc.) and bromide anions. The [R? Br, Br^?] complexes show intense absorption bands in the 200–350 nm range which follow the same Mulliken correlation as those observed for the charge‐transfer associates of bromide anions with common organic π‐acceptors. For a wide range of the associates, intermolecular R? Br???Br^? separations decrease and intramolecular C? Br bond lengths increase proportionally to the Br^?→R? Br charge transfer; and the energies of R? Br???Br^? bonds are correlated with the linear combination of orbital (charge‐transfer) and electrostatic interactions. On the whole, spectral, structural and thermodynamic characteristics of the [R? Br, Br^?] complexes indicate that besides electrostatics, the orbital (charge‐transfer) interactions play a vital role in the R? Br???Br^? halogen bonding. This indicates that in addition to controlling the geometries of supramolecular assemblies, halogen bonding leads to electronic coupling between interacting species, and thus affects reactivity of halogenated molecules, as well as conducting and magnetic properties of their solid‐state materials.     

On the Molecular Structure and Bonding in a Lithium Bismuth Porphyrin Complex: LiBi(TPP)2

A new Bi? Li porphyrin sandwich compound, LiBi(TPP)₂ has been synthesized and characterized (TPP=tetraphenylporphyrin). The unique molecular structure of LiBi(TPP)₂ is such that the Bi sits between the porphyrins and is directed towards the Li. This complex was shown to remain intact in solution by temperature‐dependent 2D NMR spectroscopy. In order to investigate the potential interaction between these two metals, DFT calculations were used and showed a Bi 6s orbital polarized towards Li which could be indicative of a Bi? Li dative bond. This bond is remarkably short, 2.87 Å, and is among the shortest Bi? Li distances seen in a small molecule.