Confocal fluorescence and Raman microscopy in industrial research

 Modern chemical and pharmaceutical industrial research benefits from improved spectroscopic tools. New developments in confocal fluorescence and Raman microscopy lead to an increase in sensitivity, selectivity and speed of microscopic imaging and fluctuation analysis resulting in a better understanding of structure–property relationships essential for targeted development. In this paper we report on the application of fluorescence and Raman microscopy for characterizing the morphology of polymeric multiphase solid-state samples and on new developments in the corresponding correlation spectroscopies for the characterization of the dynamics of complex colloidal systems in the liquid state. In the case of fluorescence new technological opportunities are gained by two-photon excitation. Received: 5 February 1998 Accepted: 16 February 1998     

Fluorescence Dynamics in the Endoplasmic Reticulum of a Live Cell: Time‐Resolved Confocal Microscopy

Fluorescence dynamics in the endoplasmic reticulum (ER) of a live non‐cancer lung cell (WI38) and a lung cancer cell (A549) are studied by using time‐resolved confocal microscopy. To selectively study the organelle, ER, we have used an ER‐Tracker dye. From the emission maximum of the ER‐Tracker dye, polarity (i.e. dielectric constant, ?) in the ER region of the cells (≈500 nm in WI38 and ≈510 nm in A549) is estimated to be similar to that of chloroform ( =506 nm, ?≈5). The red shift by 10 nm in in the cancer cell (A549) suggests a slightly higher polarity compared to the non‐cancer cell (WI38). The fluorescence intensity of the ER‐Tracker dye exhibits prolonged intermittent oscillations on a timescale of 2–6 seconds for the cancer cell (A549). For the non‐cancer cell (WI38), such fluorescence oscillations are much less prominent. The marked fluorescence intensity oscillations in the cancer cell are attributed to enhanced calcium oscillations. The average solvent relaxation time (<τ_s>) of the ER region in the lung cancer cell (A549, 250±50 ps) is about four times faster than that in the non‐cancer cell (WI38, 1000±50 ps).     

Single‐Molecule Sensors: Challenges and Opportunities for Quantitative Analysis

Measurement science has been converging to smaller and smaller samples, such that it is now possible to detect single molecules. This Review focuses on the next generation of analytical tools that combine single‐molecule detection with the ability to measure many single molecules simultaneously and/or process larger and more complex samples. Such single‐molecule sensors constitute a new type of quantitative analytical tool, as they perform analysis by molecular counting and thus potentially capture the heterogeneity of the sample. This Review outlines the advantages and potential of these new, quantitative single‐molecule sensors, the measurement challenges in making single‐molecule devices suitable for analysis, the inspiration biology provides for overcoming these challenges, and some of the solutions currently being explored.     

Cryogenic Correlative Single‐Particle Photoluminescence Spectroscopy and Electron Tomography for Investigation of Nanomaterials

Cryogenic single‐particle photoluminescence (PL) spectroscopy has been used with great success to directly observe the heterogeneous photophysical states present in a population of luminescent particles. Cryogenic electron tomography provides complementary nanometer scale structural information to PL spectroscopy, but the two techniques have not been correlated due to technical challenges. Here, we present a method for correlating single‐particle information from these two powerful microscopy modalities. We simultaneously observe PL brightness, emission spectrum, and in‐plane excitation dipole orientation of CdSSe/ZnS quantum dots suspended in vitreous ice. Stable and fluctuating emitters were observed, as well as a surprising splitting of the PL spectrum into two bands with an average energy separation of 80 meV. In some cases, the onset of the splitting corresponded to changes in the in‐plane excitation dipole orientation. These dynamics were assigned to structures of individual quantum dots and the excitation dipoles were visualized in the context of structural features.     

Cell‐Derived Vesicles for Single‐Molecule Imaging of Membrane Proteins

A new approach is presented for the application of single‐molecule imaging to membrane receptors through the use of vesicles derived from cells expressing fluorescently labeled receptors. During the isolation of vesicles, receptors remain embedded in the membrane of the resultant vesicles, thus allowing these vesicles to serve as nanocontainers for single‐molecule measurements. Cell‐derived vesicles maintain the structural integrity of transmembrane receptors by keeping them in their physiological membrane. It was demonstrated that receptors isolated in these vesicles can be studied with solution‐based fluorescence correlation spectroscopy (FCS) and can be isolated on a solid substrate for single‐molecule studies. This technique was applied to determine the stoichiometry of α3β4 nicotinic receptors. The method provides the capability to extend single‐molecule studies to previously inaccessible classes of receptors.     

Spatially Resolved Confocal Resonant Raman Microscopic Analysis of Anode‐Grown Geobacter sulfurreducens Biofilms

When grown on the surface of an anode electrode, Geobacter sulfurreducens forms a multi‐cell thick biofilm in which all cells appear to couple the oxidation of acetate with electron transport to the anode, which serves as the terminal metabolic electron acceptor. Just how electrons are transported through such a biofilm from cells to the underlying anode surface over distances that can exceed 20 microns remains unresolved. Current evidence suggests it may occur by electron hopping through a proposed network of redox cofactors composed of immobile outer membrane and/or extracellular multi‐heme c‐type cytochromes. In the present work, we perform a spatially resolved confocal resonant Raman (CRR) microscopic analysis to investigate anode‐grown Geobacter biofilms. The results confirm the presence of an intra‐biofilm redox gradient whereby the probability that a heme is in the reduced state increases with increasing distance from the anode surface. Such a gradient is required to drive electron transport toward the anode surface by electron hopping via cytochromes. The results also indicate that at open circuit, when electrons are expected to accumulate in redox cofactors involved in electron transport due to the inability of the anode to accept electrons, nearly all c‐type cytochrome hemes detected in the biofilm are oxidized. The same outcome occurs when a comparable potential to that measured at open circuit (?0.30 V vs. SHE) is applied to the anode, whereas nearly all hemes are reduced when an exceedingly negative potential (?0.50 V vs. SHE) is applied to the anode. These results suggest that nearly all c‐type cytochrome hemes detected in the biofilm can be electrochemically accessed by the electrode, but most have oxidation potentials too negative to transport electrons originating from acetate metabolism. The results also reveal a lateral heterogeneity (x–y dimensions) in the type of c‐type cytochromes within the biofilm that may affect electron transport to the electrode.     

双光子激光共焦扫描显微技术在环境化学中的应用及展望

介绍了双光子激光共焦扫描显微技术的基本原理,评述了该技术与传统荧光显微技术和单光子激光共焦扫描显微技术的异同,并且结合双光子激光共焦扫描显微技术在实际工作中的应用,评述了其在环境化学中的应用潜力及发展前景.     

一种共聚焦激光诱导荧光检测器的研制

 基于共聚焦检测，研制了一台便携式激光诱导荧光检测器。该系统具有体积小、重量轻、成本低等特点；成像观察校准系统使日常校准非常简单。采用毛细管电泳和流动注射方式对该体系性能进行了评价，以Cy5染料与Cy5标记的色氨酸作为检测物质，其检测下限为3.7 nmol/L。     

Photon Counting Histogram Analysis for Two‐Dimensional Systems

Photon counting statistics in 3D photon counting histogram analysis for one‐photon excitation is a function of the number of molecules of particular brightness in the excitation‐detection volume of a confocal microscope. In mathematical form that volume is approximated by a three‐dimensional Gaussian function which is embedded in the PCH theoretical equations. PCH theory assumes that a molecule can be found anywhere inside the excitation‐detection volume with equal probability. However, one can easily imagine systems in which this assumption is violated because molecules are constrained by the geometry of the sample. For example, molecules on a surface or in a membrane would be constrained to two dimensions. To enable the analysis of such systems by PCH, the theoretical framework requires modification. Herein, we present an extension of the PCH analysis to systems where molecules exist in thin structures that are effectively two‐dimensional. The method, aptly called two‐dimensional photon counting histogram (2D PCH), recovers the number of fluorescent particles per unit area and their molecular brightness. Both theoretical background and experimental results are presented. The theory was tested using computer‐simulated and experimental 2D PCHs obtained from confocal experiments. We demonstrate that this modification of the theoretical framework provides a tool to extract data that reveal states of aggregation, surface photophysics, and reactivity.     

Formation of an intact liposome layer adsorbed on oxidized gold confirmed by three complementary techniques: QCM‐D,AFM and confocal fluorescence microscopy

Supported layers of vesicles of dimyristoyl and dipalmitoyl phosphatidylcholine (DMPC and DPPC) containing cholesterol (CHOL) are adequate models for eukaryotic plasma membranes. Among the possible substrates to support these layers, gold offers the possibility of being used as an electrode for application in sensors. However, the formation of intact liposome layers on gold is not completely understood and several authors use more or less complex strategies to bind the liposomes. In this work we investigate the adsorption of unilamellar vesicles of DMPC, DMPC/CHOL and DMPC/DPPC/CHOL on the surface of oxidized gold using a quartz crystal microbalance with dissipation, atomic force microscopy and laser scanning confocal fluorescence microscopy. The results of all techniques indicate that for lipid concentrations ≥ 0.7 mg?mL^–1 a dense layer of intact liposomes irreversibly adsorbs on the gold surface. Copyright © 2011 John Wiley & Sons, Ltd.     

Addressing the Requirements of High‐Sensitivity Single‐Molecule Imaging of Low‐Copy‐Number Proteins in Bacteria

Single‐molecule fluorescence super‐resolution imaging and tracking provide nanometer‐scale information about subcellular protein positions and dynamics. These single‐molecule imaging experiments can be very powerful, but they are best suited to high‐copy number proteins where many measurements can be made sequentially in each cell. We describe artifacts associated with the challenge of imaging a protein expressed in only a few copies per cell. We image live Bacillus subtilis in a fluorescence microscope, and demonstrate that under standard single‐molecule imaging conditions, unlabeled B. subtilis cells display punctate red fluorescent spots indistinguishable from the few PAmCherry fluorescent protein single molecules under investigation. All Bacillus species investigated were strongly affected by this artifact, whereas we did not find a significant number of these background sources in two other species we investigated, Enterococcus faecalis and Escherichia coli. With single‐molecule resolution, we characterize the number, spatial distribution, and intensities of these impurity spots.     

SLAP: Small Labeling Pair for Single‐Molecule Super‐Resolution Imaging

Protein labeling with synthetic fluorescent probes is a key technology in chemical biology and biomedical research. A sensitive and efficient modular labeling approach (SLAP) was developed on the basis of a synthetic small‐molecule recognition unit (Ni‐trisNTA) and the genetically encoded minimal protein His_6‐10‐tag. High‐density protein tracing by SLAP was demonstrated. This technique allows super‐resolution fluorescence imaging and fulfills the necessary sampling criteria for single‐molecule localization‐based imaging techniques. It avoids masking by large probes, for example, antibodies, and supplies sensitive, precise, and robust size analysis of protein clusters (nanodomains).     

Use of a dye‐labeled ethylene‐butene copolymer as a tracer in laser scanning confocal fluorescence microscopy studies of thermoplastic olefins

A benzothioxanthene‐labeled ethylene‐butene rubber has been synthesized and tested as a potential fluorescent tracer for the impact modifier (IM) phase in laser scanning confocal fluorescence microscopy (LSCFM) studies of thermoplastic olefin (TPO) morphology. The amino‐functional Hostasol Yellow derivative HY‐DP reacts with maleated EBR‐28 to give a good labeling yield (ca. 70%) and a dye concentration of 0.051 mmol/g, when the maleated rubber is first refluxed over molecular sieves and the reaction purged with N₂. Without pretreatment of the rubber and N₂ purging, a lower labeling yield (0.036 mmol dye/g) is obtained and the labeled product tends to undergo crosslinking at 240 °C and subsequent dye detachment when the crosslinked gel is hydrolyzed. LSCFM studies reveal HY‐labeled EBR to be completely miscible and evenly dispersed in the unlabeled EBR‐9 of model TPO blends. Moreover, the HY‐labeled EBR provides good fluorescence contrast between the IM droplets and the PP matrix in the TPO blend PP/EBR (80/20) (w/w) + 3 wt % labeled polymer with respect to EBR. Imaging of IM droplets down to 40 μm below the film surface of this blend has been demonstrated. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 239–252, 2001     

Mechanostability of the Single‐Electron‐Transfer Complexes of Anabaena Ferredoxin–NADP+ Reductase

The complexes formed between the flavoenzyme ferredoxin–NADP⁺ reductase (FNR; NADP⁺=nicotinamide adenine dinucleotide phosphate) and its redox protein partners, ferredoxin (Fd) and flavodoxin (Fld), have been analysed by using dynamic force spectroscopy through AFM. A strategy is developed to immobilise proteins on a substrate and AFM tip to optimise the recognition ability. The differences in the recognition efficiency regarding a random attachment procedure, together with nanomechanical results, show two binding models for these systems. The interaction of the reductase with the natural electron donor, Fd, is threefold stronger and its lifetime is longer and more specific than that with the substitute under iron‐deficient conditions, Fld. The higher bond probability and two possible dissociation pathways in Fld binding to FNR are probably due to the nature of this complex, which is closer to a dynamic ensemble model. This is in contrast with the one‐step dissociation kinetics that has been observed and a specific interaction described for the FNR:Fd complex.     

Molecular Vise Approach to Create Metal‐Binding Sites in MOFs and Detection of Biomarkers

We report a new approach to create metal‐binding site in a series of metal–organic frameworks (MOFs), where tetratopic carboxylate linker, 4′,4′′,4′′′,4′′′′‐methanetetrayltetrabiphenyl‐4‐carboxylic acid, is partially replaced by a tritopic carboxylate linker, tris(4‐carboxybiphenyl)amine, in combination with monotopic linkers, formic acid, trifluoroacetic acid, benzoic acid, isonicotinic acid, 4‐chlorobenzoic acid, and 4‐nitrobenzoic acid, respectively. The distance between these paired‐up linkers can be precisely controlled, ranging from 5.4 to 10.8 Å, where a variety of metals, Mg²⁺, Al³⁺, Cr³⁺, Mn²⁺, Fe³⁺, Co²⁺, Ni²⁺, Cu²⁺, Zn²⁺, Ag⁺, Cd²⁺ and Pb²⁺, can be placed in. The distribution of these metal‐binding sites across a single crystal is visualized by 3D tomography of laser scanning confocal microscopy with a resolution of 10 nm. The binding affinity between the metal and its binding‐site in MOF can be varied in a large range (observed binding constants, K_obs from 1.56×10² to 1.70×10⁴ L mol^?1), in aqueous solution. The fluorescence of these crystals can be used to detect biomarkers, such as cysteine, homocysteine and glutathione, with ultrahigh sensitivity and without the interference of urine, through the dissociation of metal ions from their binding sites.