Coverage‐Dependent Variation of Adsorption Configurations of Methionine on Ge(100)

The adsorption configurations of methionine molecules on the Ge(100) surface have been studied by using DFT calculations, core‐level photoemission spectroscopy (CLPES), and low‐energy electron diffraction (LEED) to scrutinize the adsorption structure as a function of coverage. At first, we obtained two important and stable structures. One is the most stable structure between these structures described as an “O H dissociated‐N dative‐S dative‐bonded structure” and the other is a less stable adsorption structure of these indicating an “O H dissociated‐S dative‐bonded structure” by using DFT calculations. We also performed CLPES to clarify our DFT calculation results. Through the spectral analysis of the S 2p, C 1s, N 1s, and O 1s core‐level spectra, we acquired the reasonable results that also revealed quite different bonding configurations depending on the methionine coverage. At low coverage (ca. 0.30 ML), a single type of sulfur and charged nitrogen peaks, which indicate an “O H dissociated‐N dative‐S dative‐bonded structure”, were observed. On the other hand, two types of sulfur peaks with thiol formation and two nitrogen peaks with neutralized and charged characteristics were monitored at a higher coverage (0.60 ML and above), which can be described as an “O H dissociated‐S dative‐bonded structure”. Hence, we can clearly demonstrate that our results obtained from CLPES spectra and DFT calculations are matched well with each other. Moreover, we additionally confirmed that the relative population of the two types of thiols and amines being included in methionine in between half monolayer induces a surface reorientation in the ordering from 2×1 to 1×1 employing LEED. This interesting variation of the methionine adsorbed on the Ge(100) surface by coverage dependence will be precisely discussed by using DFT calculations, CLPES, and LEED.     

Living cationic polymerization of an azide‐containing vinyl ether toward addressable functionalization of polymers

We first achieved the living cationic polymerization of azide‐containing monomer, 2‐azidoethyl vinyl ether (AzVE), with SnCl₄ as a catalyst (activator) in conjunction with the HCl adduct of a vinyl ether [H‐CH₂CH(OR)‐Cl; R ? CH₂CH₂Cl, CH₂CH(CH₃)₂]. Despite the potentially poisoning azide group, the produced polymers possessed controlled molecular weights and fairly narrow distributions (M_w/M_n ～ 1.2) and gave block polymers with 2‐chloroethyl vinyl ether. The pendent azide groups are easily converted into various functional groups via mild and selective reactions, such as the Staudinger reduction and copper‐catalyzed azide‐alkyne 1,3‐cycloaddition (CuAAC; a “click” reaction). These reactions led to quantitative pendent functionalization into primary amine (? NH₂), hydroxy (? OH), and carboxyl (? COOH) groups, at room temperature and without any acidic or basic treatment. Thus, poly(AzVE) is a versatile precursor for a wide variety of functional vinyl ether polymers with well‐defined structures and molecular weights. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 1449–1455, 2010     

Relative Stability of Multiple Bonds between Germanium and Stibium. A Theoretical Study

Substituent effects on the potential energy surface of XGeSb (X=H, Li, Na, BeH, MgH, BH₂, AlH₂, CH₃, SiH₃, NH₂, PH₂, OH, SH, F, and Cl) were investigated by using B3LYP/Def2‐TZVP, B3PW91/Def2‐ TZVPP CCSD (T)//B3LYP/Def2‐TZVP methods. The isomers include structures with formal double (Ge=SbX) and triple (Xge=Sb) bonds to germanium‐stibium, so a direct comparison of these types of species is possible. Our model calculations indicate that electropositively substituted Ge=SbX species are thermodynamically and kinetically more stable than their isomeric Xge=Sb molecules. Moreover, the theoretical findings suggest that only the organic substitutions (such as CH₃) can make triply bonded Xge=Sb molecule more stable than the doubly bonded Ge=SbX species.     

甲硫醇在Cu(111)表面的解离吸附: 密度泛函理论研究

采用基于密度泛函理论的第一性原理方法和平板模型研究了CH₃SH分子在Cu(111)表面的吸附反应.系统地计算了S原子在不同位置以不同方式吸附的一系列构型, 第一次得到未解离的CH₃SH分子在Cu(111)表面顶位上的稳定吸附构型,该构型吸附属于弱的化学吸附, 吸附能为0.39 eV. 计算同时发现在热力学上解离结构比未解离结构更加稳定. 解离的CH₃S吸附在桥位和中空位之间, 吸附能为0.75-0.77 eV. 计算分析了未解离吸附到解离吸附的两条反应路径, 最小能量路径的能垒为0.57 eV. 计算结果还表明S―H键断裂后的H原子并不是以H₂分子的形式从表面解吸附而是以与表面成键的形式存在. 通过比较S原子在独立的CH₃SH分子和吸附状态下的局域态密度, 发现S―H键断裂后S原子和表面的键合强于未断裂时S原子和表面的键合.     

Interaction of Plasma Proteins with Tri‐quaternary Ammonium Salt Cationic Surfactant Studied by QCM‐D

A tri‐quaternary ammonium salt cationic surfactant was synthesized. Its structure was confirmed by using Fourier‐transform infrared spectroscopy, ¹H nuclear magnetic resonance spectroscopy, and X‐ray photoelectron spectroscopy analyses. Three model surfaces, including Au‐CH₃, Au‐OH and Au‐COOH, were fabricated. Adsorptions of surfactant on the three model surfaces and subsequent plasma proteins adsorption were investigated by quartz crystal microbalance with dissipation (QCM‐D). The mass of surfactant on the Au‐COOH surface was the largest, followed by that on the Au‐CH₃ surface, and that on the Au‐OH surface. These results suggested that the main driving force of surfactant immobilization was electrostatic interaction followed by hydrophobic interaction. Based on the results obtained, we concluded that the protein mass adsorbed on Au‐CH₃‐ S , Au‐OH‐ S , and Au‐COOH‐ S surfaces depended on the protein size and orientation. The mass and thickness of S on the Au‐COOH surface is the largest and the protein adsorption capacity of Au‐COOH‐ S surface is inferior to that of Au‐CH₃‐ S . The Au‐COOH‐ S surface could inhibit lysozyme adsorption, maintain the adsorption balance of bovine serum albumin, and induce fibrinogen‐binding protein adsorption.     

Adsorption and dissociation of the methanethiol (CH3SH) molecule on the Fe(100) surface

These contributions explore interaction modes between the methanethoil (CH₃SH) molecule and the Fe(100) surface via implementing accurate density functional theory (DFT) calculations with the inclusion of van der Waals corrections. We consider three adsorption sites over the Fe(100) surface, namely, top(T), bridge (B), and hollow (H) sites as potential catalytic active sites for the molecular and dissociative adsorption of the CH₃SH molecule. The molecular adsorption structures are found to occupy either B or T sites with former sites holding higher stability by 0.17 eV. The inclusion of van der Waals corrections refound to slightly alter adsorption energies. For instance, adsorption energies increased by ~ 0.18 and ~ 0.21 eV for B and T structure, respectively, in reference to values obtained by the plain generalized gradient approximation (GGA) functional. A stability ordering of the dissociation products was found to follow the sequence (CH₄, S) > (CH₃, S, H) > (─SCH_3, H) > (─CH₃, SH). The differential charge density distributions were examined to underpin prominent electronic contributing factors. Direct fission of C─S bond in the CH₃SH molecule attains exothermic values in the range 2.0 to 2.1 eV. The most energetically favorable sites for the surface-mediated fission of the thiol's S─H bond correspond to the structure where the ─SCH₃ and H are both situated on hollow sites with an adsorption energy of −2.43 eV. Overall, we found that inclusion of van der Waals functional to change the binding energies more noticeably in case of dissociative adsorption structures. The results presented herein should be instrumental in efforts that aim to design stand-alone Fe desulfurization catalysts.     

密度泛函理论研究十二烷硫醇在Au(111)面上的吸附

采用第一性原理方法研究了十二烷硫醇(C₁₂H₂₅SH)分子在Au(111)面上未解离和解离吸附的结构、能量和吸附性质,在此基础上分析判断长链硫醇分子在Au(111)面吸附时S―H键的解离, 以及分子链长度对吸附结构和能量的影响. 计算了S原子在不同位置以不同方式吸附的系列构型, 结果表明在S―H键解离前和解离后,均存在两种可能的表面结构, 直立吸附构型和平铺吸附构型; 未解离的C₁₂H₂₅SH分子倾向于吸附在top位, 吸附能为0.35-0.38 eV; H原子解离后C₁₂H₂₅S基团倾向于吸附在bri-fcc位, 吸附能量为2.01-2.09 eV. 比较分析未解离吸附和解离吸附, 发现C₁₂H₂₅SH分子未解离吸附相较于解离吸附要稳定, 未解离吸附属于弱化学吸附.局域电子态密度和差分电荷密度分析进一步验证了S―H解离后S原子与表面之间成键的数目增加, 而且键合更强. 同时我们发现长链硫醇的吸附能量较短链硫醇的吸附能量略大, S原子与表面Au原子之间的距离略小.     

Relative stability of multiple bonds between germanium and arsenic. A theoretical study

Substituent effects on the potential energy surface of XGeAs (X=H, Li, Na, BeH, MgH, BH₂, AlH₂, CH₃, SiH₃, NH₂, PH₂, OH, SH, F, and Cl) were investigated by using B3LYP and CCSD(T) methods. The isomers include structures with formal double (GeAsX) and triple (XGeAs) bonds to germanium–arsenic, so a direct comparison of these types of species is possible. Our model calculations indicate that electropositively substituted GeAsX species are thermodynamically and kinetically more stable than their isomeric XGeAs molecules. Moreover, the theoretical findings suggest that F, OH, NH₂, and CH₃ substitution prefer to shift the double bond (GeAsX) by forming a triple bond (XGeAs).     

Tautomerism of monochalcogenosilanoic acids CH3Si(O)XH (X = S,Se, Te) in the gas phase and in the polar and aprotic solution: An ab initio computational investigation

Computational investigations by an ab initio molecular orbital method (HF and MP2) with the 6‐311+G(d,p) and 6‐311++G(2df, 2pd) basis sets on the tautomerism of three monochalcogenosilanoic acids CH₃Si(?O)XH (X = S, Se, and Te) in the gas phase and a polar and aprotic solution tetrahydrofuran (THF) was undertaken. Calculated results show that the silanol forms CH₃Si(?X)OH are much more stable than the silanone forms CH₃Si(?O)XH in the gas‐phase, which is different from the monochalcogenocarboxylic acids, where the keto forms CH₃C(?O)XH are dominant. This situation may be attributed to the fact that the Si? O and O? H single bonds in the silanol forms are stronger than the Si? X and X? H single bonds in the silanone forms, respectively, even though the Si?X (X = S, Se, and Te) double bonds are much weaker than the Si?O double bond. These results indicate that the stability of the monochalcogenosilanoic acid tautomers is not determined by the double bond energies, contrary to the earlier explanation based on the incorrect assumption that the Si?S double bond is stronger than the S?O double bond for the tautomeric equilibrium of RSi(?O)SH (R?H, F, Cl, CH₃, OH, NH₂) to shift towards the thione forms [RSi(?S)OH]. The binding with CH₃OCH₃ enhances the preference of the silanol form in the tautomeric equilibrium, and meanwhile significantly lowers the tautomeric barriers by more than 34 kJ/mol in THF solution. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Methanol oxidation on the PtPd(111) alloy surface: A density functional theory study

The mechanisms of methanol (CH₃OH) oxidation on the PtPd(111) alloy surface were systematically investigated by using density functional theory calculations. The energies of all the involved species were analyzed. The results indicated that with the removal of H atoms from adsorbates on PtPd(111) surface, the adsorption energies of (i) CH₃OH, CH₂OH, CHOH, and COH increased linearly, while those of (ii) CH₃OH, CH₃O, CH₂O, CHO, and CO exhibited odd‐even oscillation. On PtPd(111) surface, CH₃OH underwent the preferred initial C H bond scission followed by successive dehydrogenation and then CHO oxidation, that is, CH₃OH → CH₂OH → CHOH → CHO → CHOOH → COOH → CO₂. Importantly, the rate‐determining step of CH₃OH oxidation was found to switch from CO → CO₂ on Pt(111) to COOH → CO₂ + H on PtPd(111) with a lower energy barrier of 0.96 eV. Moreover, water also decomposed into OH more easily on PtPd(111) than on Pt(111). The calculated results indicate that alloying Pt with Pd could efficiently improve its catalytic performance for CH₃OH oxidation through altering the primary pathways from the CO path on pure Pt to the non‐CO path on PtPd(111).     

Polyion Covalency: Exotic Species from the Unexplored World of Electrostatically Shielded Molecular Ion Chemistry

Standard quantum chemical methods have been employed to describe a variety of kinetically stable polyionic molecular species that are trapped in appreciable potential wells by chemical bonding forces, despite powerful electrostatic opposition that challenges conventional chemical detection and characterization. The studied species are covalent or dative analogs of “anti‐electrostatic” hydrogen‐bonded (AEHB) species, all illustrating how short‐range quantum covalency can overcome the powerful “shielding” opposition of long‐range electrostatic forces to form highly charged molecular species, analogous to known neutral or singly ionic counterparts. Computational predictions of representative structural, spectroscopic, and NBO‐based electronic signatures of multiply charged analogs of common neutral species (CH₃CH₃, CO₂, FeCO) are provided to suggest the unique material properties characteristic of this shielded domain of polyionic chemical phenomena.     

Theoretical study of the effects of substitution,solvation, and structure on the interaction between nitriles and methanol

We report an investigation on intermolecular interactions in R? CN ··· H? OCH₃ (R = H, CH₃, F, Cl, NO₂, OH, SH, SCH₃, CHO, COCH₃, CH₂Cl, CH₂F, CH₂OH, CH₂COOH, CF₃, SCOCH₃, SCF₃, OCHF₂, CH₂CF₃, CH₂OCH₃, and CH₂CH₂OH) complexes using density functional theory. The calculations were conducted on B3LYP/6‐311++G** level of theory for optimization of geometries of complexes and monomers. An improper hydrogen bonding (HB) in the H₃CO? H ··· NC? R complexes was observed in that N atom of the nitriles functions acts as a proton acceptor. Furthermore, quantum theory of “Atoms in Molecules” (AIM) and natural bond orbital (NBO) method were applied to analyze H‐bond interactions in respective complexes. The electron density (ρ) and Laplacian (?²ρ) properties, estimated by atoms in molecules calculations, indicate that H ··· N bond possesses low ρ and positive ?²ρ values, which are in agreement with partially covalent character of the HBs, whereas O? H bonds have negative ?²ρ values. In addition, the weak intermolecular force due to dipole–dipole interaction (U) is also considered for analysis. The examination of HB in these complexes by quantum theory of NBO method fairly supports the ab initio results. Natural population analysis data, the electron density, and Laplacian properties, as well as, the ν(O? H) and γ(O? H) frequencies of complexes, calculated at the B3LYP/6‐311++G** level of theory, are used to evaluate the HB interactions. The calculated geometrical parameters and conformational analysis in water phase solution show that the H₃CO? H ··· NC? R complexes in water are more stable than that in gas phase. The obtained results demonstrated a strong influence of the R substituent on the properties of complexes. Numerous correlations between topological, geometrical, thermodynamic properties, and energetic parameters were also found. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Application of thiol‐ene click chemistry to preparation of functional polyethylene with high molecular weight and high polar group content: Influence of thiol structure and vinyl type on reactivity

A series of functional polyethylenes have been simply and efficiently synthesized via the combination of regioselective ethylene/5‐vinyl‐2‐norbornene (VNB) copolymerization using [PhNC(CF₃)CHCO(Ph)]₂TiCl₂ catalyst and following ultraviolet light initiated thiol‐ene click reaction. On treatment of ethylene/VNB copolymer with different thiols including mercaptoethanol, 1‐thioglycerol, methyl mercaptoacetate, methyl mercaptopropionate, 2‐mercaptoethylamine, mercaptoacetic acid, and mercaptopropanoic acid, various polar groups have been successfully introduced into the polyethylene. Except 2‐mercaptoethylamine, the functionalizations are quite efficient with the degree of functionalization higher than 94%, which is independent of thiol structure and double bond content. The content of polar group in functional polyethylene can be tuned in a wide range of 0–30 mol %. Gel permeation chromatography profiles indicate all functional polyethylenes that have very high molecular weights (160–336 kg/mol) with homogeneous formation. Besides, systematic investigation of the influence of vinyl type and thiol structure on reactivity has been also carried out. By treatment of mercaptoethanol with different copolymers (ethylene/VNB, ethylene/5‐ethylidene‐2‐norbornene, and ethylene/dicyclopentadiene copolymer), the order of vinyl reactivity can be summarized as terminal > internal > cyclic double bond. For different thiols, the reactivity has the sequence of SHCH₂COOH > SHCH₂COOCH₃ > SHCH₂CH₂COOH > SHCH₂CH₂COOCH₃ > SHCH₂CH(OH)CH₂OH > SHCH₂CH₂OH > SHCH₂CH₂NH₂, which is depended on the solubility and the electron‐withdrawing inductive effect of polar group. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Selective Functionalization of Hollow Nanospheres with Acid and Base Groups for Cascade Reactions

The inner‐surface functionalization of hollow silica spheres has rarely been reported and is still a challenging topic. Herein, we report a deacetalization–Henry cascade reaction catalyzed by dual‐functionalized mesoporous silica hollow nanospheres with basic amine groups (?NH₂) on the internal shell and carboxylic acid groups (?COOH) on the external shell. The selective functionalization has been realized by a combination of “step‐by‐step post‐grafting” and “cationic surfactant‐assisted selective etching” strategy. Compared to unisolated catalyst, the selectively isolated acidic and basic dual catalyst provides excellent catalytic performance for the deacetalization–Henry cascade reaction in terms of both activity (>99 %) and selectivity (95 %).     

A Hydrogen‐Bonded Organic Framework (HOF) with Type IV NH3 Adsorption Behavior

An S‐shaped gas isotherm pattern displays high working capacity in pressure‐swing adsorption cycle, as established for CO₂, CH₄, acetylene, and CO. However, to our knowledge, this type of adsorption behavior has not been revealed for NH₃ gas. Herein, we design and characterize a hydrogen‐bonded organic framework (HOF) that can adsorb NH₃ uniquely in an S‐shape (type IV) fashion. While conventional porous materials, mostly with type I NH₃ adsorption behavior, require relatively high regeneration temperature, this platform which has significant working capacity is easily regenerated and recyclable at room temperature.     

Functionalization of polymeric surfaces by simple photoactivation of C?H bonds

A universal photoassisted pathway to functionalize polymeric surfaces is presented by transferring the inert surface sp³ C? H bonds into reactive groups, such as ? SO₃H, ? NH₂, ? SH, and ? COOH. The proposed method uses acetone as photoinitiator and different phenols with a para substituent XR as the reactants. Acetone excited by UV irradiation acts as a pair of scissors cutting both the surface C? H bonds of the polymer substrate and the O? H bonds of phenol, leading to the formation of carbon‐centered surface chain free radicals and oxygen‐centered phenoxy free radicals. By coupling of these two radicals, a variety of functional X groups with an R spacer from XR species of different phenol reactants were readily bonded to the polymeric surfaces, where phenol reactants included 4‐hydroxylbenzene sulfonic acid for ? SO₃H, p‐aminophenol and tyramine for ? NH₂, 4‐hydroxythiophenol for ? SH, and tyrosine for ? COOH. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011     

Substituent effects on the Bergman cyclization of (Z)‐1,5‐hexadiyne‐3‐enes: a systematic computational study

The effects of several substituents (? BH₂, ? BF₂, ? AlH₂, ? CH₃, ? C₆H₅, ? CN, ? COCH₃, ? CF₃, ? SiH₃, ? NH₂, ? NH₃⁺, ? NO₂, ? PH₂, ? OH, ? OH₂⁺, ? SH, ? F, ? Cl, ? Br) on the Bergman cyclization of (Z)‐1,5‐hexadiyne‐3‐ene (enediyne, 3 ) were investigated at the Becke–Lee–Yang–Parr (BLYP) density functional (DFT) level employing a 6‐31G* basis set. Some of the substituents (? NH₃⁺, ? NO₂, ? OH, ? OH₂⁺, ? F, ? Cl, ? Br) are able to lower the barrier (up to a minimum of 16.9 kcal mol^?1 for difluoro‐enediyne 7rr ) and the reaction enthalpy (the cyclization is predicted to be exergonic for ? OH₂⁺ and ? F) compared to the parent system giving rise to substituted 1,4‐dehydrobenzenes at physiological temperatures. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1605–1614, 2001     

Manipulation of Structure on Silicon Surfaces via Chemical Adsorption

Via chemical adsorption, various films were assembled onto silicon surfaces. The structures and properties of the monolayer‐ or bilayer‐modified silicon surfaces, such as Si‐C₁₀H₂₀ CH₂OC(O)CF₃, Si‐C₁₀H₂₀CH₂OH, and Si‐C₁₀H₂₀‐CH₂‐NH‐C₁₈H₃₇, were investigated by various techniques. x‐ray photoelectron spectroscopy (XPS) gave clear proofs of the formation of octadecylamine layer and other kinds of layers on silicon surfaces. The contact angle measurements showed that the wettability of silicon surfaces was dominated by the terminal functional groups of the attached layers. Atomic force microscopy (AFM) observations showed that interesting patterns have formed on the monolayer‐ or bilayer‐modified silicon surfaces. Electrochemical impedance spectra (EIS) measurements showed that the Si‐C₁₀H₂₀CH₂‐NH‐C₁₈H₃₇ has a better ability to prevent charge transfer as compared with that of Si‐C₁₀H₂₀CH₂OH, which may find applications in the area of surface passivations.     

DFT study on hydrogen-bonding adsorption mechanism of rutin onto macroporous adsorption resins functionalized with amino, hydroxyl, and carboxyl groups

The adsorption mechanism of a series of macroporous adsorption resins (p-(CH₃NH)PhL (L = NH₂, OH, COOH)) with rutin have been investigated using density functional theory calculations at B3LYP/6-31G(d,p) level of theory. Solvent effects on these species were explored using calculations that included a polarizable continuum model for the aqueous solvent. In this article, the geometry structure, interaction energies and the infrared spectra for the stable reactants and the adsorption complexes were obtained and analyzed. The results show that the hydrogen-bonding have been formed in the adsorption complexes. The higher interaction energy is calculated for the carboxyl group, while the resin with amino group has the highest adsorption capacity for rutin. The adsorption complexes become more and more stable as increasing the number of adsorbents. Our theoretical study is in good explanation for the experimental results.     

硫的取代对基态硫代乙酸单分子解离反应影响的理论研究

应用B3LYP方法,结合6-31G**、cc-pVDZ、aug-cc-pVDZ和cc-pVTZ基组对硫代乙酸的两种异构体CH3C(O)SH和CH3C(S)OH在基态势能面上的9个单分子反应进行了研究。本文计算预测硫代乙酸主要以CH3C(O)SH的形式存在,两种异构体均以顺式构象为优势构象。通过对比CH3C(O)SH、CH3C(S)OH和 CH3C(O)OH的反应性差异,我们可以得出结论：CH3C(O)OH中-OH基团的O被S取代后,只有当-SH作为一个整体参加反应时才对分子解离过程有较大影响;而C=O或C=S对反应性影响较小。