Besides N(2), What Is the Most Stable Molecule Composed Only of Nitrogen Atoms?

Polynitrogen molecules have been studied systematically at high levels of ab initio and density functional theory (DFT). Besides N(2), the thermodynamically most stable N(n)() molecules, located with the help of a newly developed energy increment system, are all based on pentazole units. The geometric, energetic, and magnetic criteria establish pentazole (2) and its anion (3) to be as aromatic as their isoelectronic analogues, e.g., furan, pyrrole, and the cyclopentadienyl anion. The bond lengths in 2 and 3 are equalized; both have large aromatic stabilization energies (ASE) and also substantial magnetic susceptibility exaltations (Lambda). The C(s)() symmetric azidopentazole (14), a candidate for experimental investigation, is the lowest energy N(8) isomer but is still 196.7 kcal/mol higher in energy than four N(2) molecules. Octaazapentalene (12) with 10 pi electrons also is aromatic. The D(2)(d)() symmetric bispentazole (21) is the lowest energy N(10) minimum but is 260 kcal/mol higher in energy than five N(2) molecules. For strain-free molecules, the average deviation is +/-2.6 kcal/mol between the DFT energies and those based on the increment scheme. The increment scheme also provides estimates of the strain energies of polynitrogen compounds, e.g., tetraazatetrahedrane (8, 48.2 kcal/mol), octaazacubane (11, 192.6 kcal/mol), and N(20) (27, 294.6 kcal/mol), and is useful in searching for new high-energy-high-density materials.     

Impact of N-Aryl- and NHC Core-Substituents on the Coupling of Alkylzinc Nucleophiles: Is Bigger always Better?

Bulky Pd−N-heterocyclic carbene (NHC) catalysts (e. g., N-(di-2,6-(3-pentyl)phenyl), IPent) have been shown to have significantly higher reactivity in a wide variety of cross-coupling applications (i. e., C−C, C−S, C−N) than less hindered variants (e. g., N-(di-2,6-(isopropyl)phenyl), IPr). Further, chlorinating the backbone of the NHC ring sees an even greater increase in reactivity. In the cross-coupling of (hetero)aryl electrophiles to secondary alkyl nucleophiles, making the N-aryl groups larger reduces the amount of β-hydride elimination leading to alkene byproducts and chlorinating the NHC core had an even greater effect, all but eliminating alkene formation. In the present study involving the cross-coupling of primary alkyl electrophiles and nucleophiles, a sharp and surprising reversal of all of the above trends was observed. Bulkier catalysts had generally slower rate of reaction and β-hydride elimination worsened leading to extensive amounts of alkene byproducts.     

Sulfinates as Nucleophiles for the Ring-Opening of Epoxides: A Convenient Route to β-Hydroxysulfones

It has been found that the nucleophilic ring-opening of epoxides by arenesulfinates, in the presence of magnesium nitrate as a Lewis acid catalyst, provides a preparatively useful, convenient route to β-hydroxysulfones.     

Cage Chirality of P?C Cage Compounds: Highly Diastereoselective Formation of Diastereomeric P5‐Deltacyclenes,Separation of Diastereomers,and Removal of the Chiral Auxiliary

Cage chirality : Cyclic addition reactions of chirally modified stannyl‐1,2,4‐triphospholes with tBuC?P leads to stannylated P₅‐deltacyclenes in high yields as separable 1:1 mixtures of diastereomers. Destannylation of a separated diastereomer gives a single enantiomer of an optically pure P? C cage compound. The novel cage‐chiral P₅C₄ unit (shown here) dominates the chiroptical properties, not only of the isolated enantiomer, but of the diastereomeric compounds as well.

     

The Reactivity of Ambident Nucleophiles: Marcus Theory or Hard and Soft Acids and Bases Principle?

The model reactions CH₃X + (NH—CH=O)M ➔ CH₃—NH—NH═O or NH═CH—O—CH₃ + MX (M = none, Li, Na, K, Ag, Cu; X = F, Cl, Br) are investigated to demonstrate the feasibility of Marcus theory and the hard and soft acids and bases (HSAB) principle in predicting the reactivity of ambident nucleophiles. The delocalization indices (DI) are defined in the framework of the quantum theory of atoms in molecules (QT-AIM), and are used as the scale of softness in the HSAB principle. To react with the ambident nucleophile NH═CH—O⁻, the carbocation H₃C⁺ from CH₃X (F, Cl, Br) is actually a borderline acid according to the DI values of the forming C…N and C…O bonds in the transition states (between 0.25 and 0.49), while the counter ions are divided into three groups according to the DI values of weak interactions involving M (M…X, M…N, and M…O): group I (M = none, and Me₄N) basically show zero DI values; group II species (M = Li, Na, and K) have noticeable DI values but the magnitudes are usually less than 0.15; and group III species (M = Ag and Cu(I)) have significant DI values (0.30–0.61). On a relative basis, H₃C⁺ is a soft acid with respect to group I and group II counter ions, and a hard acid with respect to group III counter ions. Therefore, N-regioselectivity is found in the presence of group I and group II counter ions (M = Me₄N, Li, Na, K), while O-regioselectivity is observed in the presence of the group III counter ions (M = Ag, and Cu(I)). The hardness of atoms, groups, and molecules is also calculated with new functions that depend on ionization potential (I) and electron affinity (A) and use the atomic charges obtained from localization indices (LI), so that the regioselectivity is explained by the atomic hardness of reactive nitrogen atoms in the transition states according to the maximum hardness principle (MHP). The exact Marcus equation is derived from the simple harmonic potential energy parabola, so that the concepts of activation free energy, intrinsic activation barrier, and reaction energy are completely connected. The required intrinsic activation barriers can be either estimated from ab initio calculations on reactant, transition state, and product of the model reactions, or calculated from identity reactions. The counter ions stabilize the reactant through bridging N- and O-site of reactant of identity reactions, so that the intrinsic barriers for the salts are higher than those for free ambident anions, which is explained by the increased reorganization parameter Δr. The proper application of Marcus theory should quantitatively consider all three terms of Marcus equation, and reliably represent the results with potential energy parabolas for reactants and all products. For the model reactions, both Marcus theory and HSAB principle/MHP principle predict the N-regioselectivity when M = none, Me₄N, Li, Na, K, and the O-regioselectivity when M = Ag and Cu(I). © 2019 Wiley Periodicals, Inc.     

Three-component Oxytrifluoromethylation of Alkenes: Highly Efficient and Regioselective Difunctionalization of CC Bonds Mediated by Photoredox Catalysts

Here comes the sun: A facile vicinal difunctionalization of alkenes, oxytrifluoromethylation, was established by visible-light-driven photoredox catalysis. Judicious choice of the CF(3) source is key. Nucleophiles such as water, alcohols, and carboxylic acids can be used in this highly efficient (2-4?h) and regioselective (100?%) transformation using light-emitting diode (LED) lamps and natural sunlight. SET=single-electron transfer.     

Direct Nucleophilic Substitution Reaction of Cage B−H Bonds by Grignard Reagents: A Route to Regioselective B4-Alkylation of o-Carboranes

Direct nucleophilic substitution reaction of cage B−H bonds of o-carboranes by Grignard reagents in the absence of any transition metals has been achieved for the first time, and leads to the regioselective synthesis of a series of 4-alkyl-1,2-diaryl-o-carboranes in very high yields. The presence of two electron-withdrawing aryl groups on the cage carbon atoms is crucial to realizing the reaction. The regioselectivity is controlled by both electronic and steric factors. This work represents a new strategy for the development of methods for carborane functionalization.     

Emetine and the Alternative Splicing of Bcl-X: Where to next?

Interference with the alternative splicing of apoptotic factors offers an innovative and specific mechanism to target malignant cells. In this issue of Chemistry & Biology, Zhou et al. report on the regulation of the alternative splicing of Bcl-x pre-mRNA in response to emetine, a potent protein synthesis inhibitor, as well as define a major player in the signaling mechanism.     

ChemInform Abstract: The Hypothetic Phosphorus Clusters P6 and P8 - Which Isomers Would Be the Most Stable Ones?

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Are the Fluorescent Properties of the Cyan Fluorescent Protein Sensitive to Conditions of Oxidative Stress?

The modifications induced by reactive oxygen species (ROS) on fluorescent proteins (FPs) may have important implications for live cell fluorescence imaging. Using quantitative γ-radiolysis, we have studied the ROS-induced biochemical and photophysical perturbations on recombinant cyan fluorescent protein (CFP). After oxidation by the ˙OH radical, the protein displays a modified RP-HPLC elution profile, while the CFP fluorescence undergoes pronounced decreases in intensity and lifetime, without changes in its excitation and emission spectra. Meanwhile, the Förster resonant energy transfer (FRET) between the single W⁵⁷ and the chromophore remains unperturbed. These results rule out a direct oxidation of the CFP chromophore and of W⁵⁷ as well as major changes in the protein 3D structure, but show that new fluorescent forms associated to a higher level of dynamic quenching have been generated. Thus, strict in situ controls are required when CFP is to be used for FRET studies in situations of oxidative activity, or under strong illumination.     

Are the continuum and the lattice representation of freely jointed chains equivalent?

The partition function and force elongation relation of freely jointed chains of rigid rod segments are calculated for arbitrary dimensions in the continuum and on a lattice. The qualitative differences between these models are discussed for polymers embedded in spaces of various dimensions. These investigations show that chains of rigid rod segments in higher dimensions are equivalent to chains of segments with internal degree of freedom in lower dimensions. Networks composed of these chains show a similar behaviour as uniaxial stretching experiments of rubber-like materials.     

Silylene-Mediated Polarity Reversal of Dienoates: Additions of Dienoates to Aldehydes at the δ-Position To Form trans-Dioxasilacyclononenes

Silylene transfer to α,β,γ,δ-unsaturated carbonyl compounds produced oxasilacyclopentenes that underwent thermal additions to aldehydes to produce trans-dioxasilacyclononenes as single stereoisomers. This reaction, which converts the δ-position of the unsaturated carbonyl compound into a nucleophilic center, represents an inversion of polarity from the normal pattern of reactivity. The stereospecificity of the reaction suggests that the addition to aldehydes occurred through a closed, chairlike six-membered transition state. This reaction can be used to prepare enantiomerically pure materials by the use of chiral auxiliaries to control the formation of the oxasilacyclopentenes. Functionalization of the resulting trans-cycloalkene occurred with complete stereoselectively.     

Are the enolates of amides and esters stabilized by electrostatics?

The fact that amides and esters form less stable enolates than ketones might be seen as evidence that electrostatic stabilization is unimportant in these anions. However, ab initio molecular orbital calculations show that electrostatic stabilization does in fact lie beneath the competing resonance effect that causes the decrease in acidity. The electrostatic contribution is revealed by examining torsionally twisted amide and ester structures in which the pi resonance interactions are largely inhibited. These twisted amides and esters have greater enolate acidity than the corresponding ketones. Qualitatively similar behavior is observed with respect to protonation, such that twisted amides and esters are generally less basic than the reference ketones, in striking contrast to their behavior in the normal geometries.     

Are Boryl Radicals from Amine–Boranes and Phosphine–Boranes the Most Stable Radicals?

The relative stability of the radicals that can be produced from amine–boranes and phosphine–boranes is investigated at the G3‐RAD level of theory. Aminyl ([RNH]^.:BH₃) and phosphinyl ([RPH]^.:BH₃) radicals are systematically more stable than the boryl analogues, [RNH₂]:BH₂^. and [RPH₂]:BH₂^.. Despite similar stability trends for [RNH]^.:BH₃ and [RPH]^.:BH₃ radicals with respect to boryl radicals, there are significant dissimilarities between amine– and phosphine–boranes. The homolytic bond dissociation energy of the N?H bond decreases upon association of the amines with BH₃, whereas that of the P?H bond for phosphines increases. The stabilization of the free amine is much smaller than that of the corresponding aminyl radical, whereas for phosphines this is the other way around. The homolytic bond dissociation energy of the B?H bond of borane decreases upon complexation with both amines and phosphines.     

Is NMR the tool to characterize the structure of C20 isomers?

We investigate the feasibility of using nuclear magnetic resonance (NMR) chemical shift calculations as a tool to provide structural information for C₂₀ fullerene type molecules. NMR chemical shifts are extremely sensitive to the local chemical environment of an atom, reflecting unambiguously its bond lengths and angles as well as its hybridization. Thus, they can distinguish between the different isomers that are candidates for the ground state of this molecule. We calculate the NMR shifts for several C₂₀ isomers and show that NMR constitutes a potential tool to discriminate and identify experimentally a particular C₂₀ molecular conformation, and also the level of theory which best describes the experimental structure.     

Using Polymers to Impart Lubricity and Biopassivity to Surfaces: Are These Properties Linked?

Polymer brushes have been widely applied for the reduction of both friction and non‐specific protein adsorption. In many (but not all) applications, such as contact lenses or medical devices, this combination of properties is highly desirable. Indeed, for many polymer‐brush systems, lubricity and resistance to biofouling appear to go hand in hand, with modifications of brush architecture, for example, leading to a similar degree of enhancement (or degradation) in both properties. In the case of poly(ethylene glycol) (PEG) brushes, this has been widely demonstrated. There are, however, examples where this behavior breaks down. In systems where linear brushes are covalently crosslinked during surface‐initiated polymerization (SIP), for example, the presence and the chemical nature of links between grafted chains might or might not influence biopassivity of the films, while it always causes an increment in friction. Furthermore, when the grafted‐chain topology is shifted from linear to cyclic, chemically identical brushes show a substantial improvement in lubrication, whereas their protein resistance remains unaltered. Architectural control of polymer brush films can provide another degree of freedom in the design of lubricious and biopassive coatings, leading to new combinations of surface properties and their independent modulation.     

On the Formation of Cyclobutane Pyrimidine Dimers in UV‐irradiated DNA: Why are Thymines More Reactive?¶

The reaction pathways for thermal and photochemical formation of cyclobutane pyrimidine dimers in DNA are explored using density functional theory techniques. Although it is found that the thermal [2 + 2] cycloadditions of thymine + thymine (T + T --> T x T), cytosine + cytosine (C + C --> C x C) and cytosine + thymine (C + T --> C x T) all are similarly unfavorable in terms of energy barriers and reaction energies, the excited-state energy curves associated with the corresponding photochemical cycloadditions display differences that--in line with experimental findings--unanimously point to the predominance of T x T in UV-irradiated DNA. It is shown that the photocycloaddition of thymines is facilitated by the fact that the S1 state of the corresponding reactant complex lies comparatively high in energy. Moreover, at a nuclear configuration coinciding with the ground-state transition structure, the excited-state energy curve displays an absolute minimum only for the T + T system. Finally, the T + T system is also associated with the most favorable excited-state energy barriers and has the smallest S2-S0 energy gap at the ground-state transition structure.     

Inclusion Complexes of Ionic Liquids and Cyclodextrins: Are They Formed in the Gas Phase?

The interaction of imidazolium-based ionic liquids with α- and β-cyclodextrins was investigated by electrospray ionization mass spectrometry with variable collision induced dissociation energy and quantum chemical gas-phase calculations. The center-of-mass energy at which 50 % of a precursor ion decomposes (E_cm,1/2) was determined for the isolated [cyclodextrin + cation]⁺ or [cyclodextrin + anion]^– adduct ions of imidazolium-based ionic liquids with different alkyl chain lengths combined with a large set of anions, such as chloride, bromide, bis(trifluoromethylsulfonyl)imide, tetrafluoroborate, hexafluorophosphate, trifluoromethanesulfonate, methanesulfonate, dicyanamide, and hydrogensulfate. Moreover, both symmetric and asymmetric imidazolium cationic cores were evaluated. The relative interaction energies in the adduct ions were interpreted in terms of the influence of cation/anion structures and their inherent properties, such as hydrophobicity and hydrogen bond accepting ability, in the complexation process with the cyclodextrins. The trends observed in the mass spectral data together with quantum-chemical calculations suggest that in the gas phase, cations and anions will preferentially interact with the lower or upper rim of the cyclodextrin, respectively, as opposed to what has been reported in condensed phase where the formation of an inclusion complex between ionic liquid and cyclodextrin is assumed.