Transannular Hydrogen Bonding in Planar‐Chiral [2.2]Paracyclophane‐Bisamides

A series of [2.2]paracyclophane‐bisamide regioisomers and alkylated comparators were designed, synthesized, and characterized in order to better understand the transannular hydrogen bonding of [2.2]paracyclophane‐based molecular recognition units. X‐Ray crystallography shows that transannular hydrogen bonding is maintained in the solid‐state, but no stereospecific self‐recognition is observed. The assignment of both transannularly and intermolecularly hydrogen bonded N?H stretches could be made by infrared spectroscopy, and the effect of transannular hydrogen bonding on amide bond rotation dynamics is observed by ¹H‐NMR in nonpolar solvents. The consequences of transannular hydrogen bonding on the optical properties of [2.2]paracyclophane is observed by comparing alkylated and non‐alkylated pseudo‐ortho 4,12‐[2.2]paracyclophane‐bisamides. Finally, optical resolution of 4‐mono‐[2.2]paracyclophane and pseudo‐ortho 4,12‐[2.2]paracyclophane‐bisamides was achieved through the corresponding sulfinyl diastereoisomers for circular dichroism studies. Transannular hydrogen bonding in [2.2]paracyclophane‐amides allows preorganization for self‐complementary intermolecular assembly, but is weak enough to allow rapid rotation of the amides even in nonpolar solvents.     

Ditopic Receptors based on Lower‐ and Upper‐Rim Substituted Hexahomotrioxacalix[3]arenes: Cation‐Controlled Hydrogen Bonding of Anion

Heteroditopic hexahomotrioxacalix[3]arene receptors that are capable of binding an anion and a cation simultaneously in a cooperative fashion were synthesized. The structure of one of the triamide derivatives was confirmed by single‐crystal X‐ray diffraction. The binding of alkali metals at the lower rim, and the binding of anions (chloride, bromide) at the upper rim, has been investigated by using ¹H NMR titration experiments. Alkali metal binding at the lower rim controls the calix cavity. Li⁺‐ion binding to the lower rim can improve the binding ability of anions at the upper rim amide moiety by a factor of 15, thus suggesting a strong positive allosteric effect for anion recognition. However, when a Na⁺ cation is bound to the ionophoric site on the lower rim, the calix cavity is changed from a “flattened cone” to a more‐upright form, which is favored for intramolecular hydrogen bonding between the neighboring NH and C?O groups; this change can block the inclusion of anions onto the amide moiety at the upper rim, which strongly suggests a negative allosteric effect of Na⁺‐ion binding, which controls the cooperative recognition system.     

Strong CH⋅⋅⋅Halide Hydrogen Bonds from 1,2,3‐Triazoles Quantified Using Pre‐Organized and Shape‐Persistent Triazolophanes

The structures associated with halide (F^?, Cl^?, Br^?) complexation inside CH hydrogen‐bonding macrocyclic receptors, called triazolophanes, are characterized using density functional theory (DFT). The associated binding energies in the gas and solution phases are evaluated. The ruffles in the empty triazolophane become smoothed‐out upon Cl^?‐ and Br^?‐ion binding directly into the middle of the cavity. The largely pre‐organized cavity morphs into an elliptical shape to facilitate shorter hydrogen bonds in the north and south regions and longer ones west and east. The smaller F^? ion sits in, and flattens‐out, only the north (or south) region. The 1,2,3‐triazoles show shorter CH???Cl^? contacts than for the phenylenes. Both Cl^? and Br^? show the same binding geometries but Cl^? has a larger binding energy consistent with its stronger Lewis basicity. Model triads were used to decompose the overall binding energy into those of its components. In the course of this triad analysis, anion polarization was identified and its contribution to the triad???Cl^? binding energy estimated. Consequently, the binding energies for the individual aryl units within the comparatively non‐polarized triazolophanes were estimated. The 1,2,3‐triazoles are twice as strong as the phenylenes thus contributing most of the interaction energy to Cl^?‐ion binding. Therefore, the 1,2,3‐triazoles appear to approach the hydrogen bond strengths of the NH donors of pyrrole units.     

Investigation of Steric Influences on Hydrogen‐Bonding Motifs in Cyclic Ureas by Using X‐Ray,Neutron, and Computational Methods

A series of urea‐derived heterocycles, 5N‐substituted hexahydro‐1,3,5‐triazin‐2‐ones, has been prepared and their structures have been determined for the first time. This family of compounds only differ in their substituent at the 5‐position (which is derived from the corresponding primary amine), that is, methyl ( 1 ), ethyl ( 2 ), isopropyl ( 3 ), tert‐butyl ( 4 ), benzyl ( 5 ), N,N‐(diethyl)ethylamine ( 6 ), and 2‐hydroxyethyl ( 7 ). The common heterocyclic core of these molecules is a cyclic urea, which has the potential to form a hydrogen‐bonding tape motif that consists of self‐associative (8) dimers. The results from X‐ray crystallography and, where possible, Laue neutron crystallography show that the hydrogen‐bonding motifs that are observed and the planarity of the hydrogen bonds appear to depend on the steric hindrance at the α‐carbon atom of the N substituent. With the less‐hindered substituents, methyl and ethyl, the anticipated tape motif is observed. When additional methyl groups are added onto the α‐carbon atom, as in the isopropyl and tert‐butyl derivatives, a different 2D hydrogen‐bonding motif is observed. Despite the bulkiness of the substituents, the benzyl and N,N‐(diethyl)ethylamine derivatives have methylene units at the α‐carbon atom and, therefore, display the tape motif. The introduction of a competing hydrogen‐bond donor/acceptor in the 2‐hydroxyethyl derivative disrupts the tape motif, with a hydroxy group interrupting the N? H???O?C interactions. The geometry around the hydrogen‐bearing nitrogen atoms, whether planar or non‐planar, has been confirmed for compounds 2 and 5 by using Laue neutron diffraction and rationalized by using computational methods, thus demonstrating that distortion of O‐C‐N‐H torsion angles occurs to maintain almost‐linear hydrogen‐bonding interactions.     

Self‐Assembly of Ureido‐Pyrimidinone Dimers into One‐Dimensional Stacks by Lateral Hydrogen Bonding

Ureido‐pyrimidinone (UPy) dimers substituted with an additional urea functionality self‐assemble into one‐dimensional stacks in various solvents through lateral non‐covalent interactions. ¹H NMR and DOSY studies in CDCl₃ suggest the formation of short stacks (<10), whereas temperature‐dependent circular dichroism (CD) studies on chiral UPy dimers in heptane show the formation of much larger helical stacks. Analysis of the concentration‐dependent evolution of chemical shift in CDCl₃ and the temperature‐dependent CD effect in heptane suggest that this self‐assembly process follows an isodesmic pathway in both solvents. The length of the aggregates is influenced by substituents attached to the urea functionality. In sharp contrast, UPy dimers carrying an additional urethane group do not self‐assemble into ordered stacks, as is evident from the absence of a CD effect in heptane and the concentration‐independent chemical shift of the alkylidene proton of the pyrimidinone ring in CDCl₃.     

Exploring Orthogonal Hydrogen Bonding towards Designing Organic‐Salt‐Based Supramolecular Gelators: Synthesis,Structures, and Anticancer Properties

A series of primary ammonium monocarboxylate (PAM) salts derived from β‐alanine derivatives of pyrene and naphthalene acetic acid, along with the parent acids, were explored to probe the plausible role of orthogonal hydrogen bonding resulting from amide???amide and PAM synthons on gelation. Single‐crystal X‐ray diffraction (SXRD) studies were performed on two parent acids and five PAM salts in the series. The data revealed that orthogonal hydrogen bonding played an important role in gelation. Structure–property correlation based on SXRD and powder X‐ray diffraction data also supported the working hypothesis upon which these gelators were designed. 3‐(4,5‐Dimethylthiazol‐2‐yl)‐2,5‐diphenyltetrazolium bromide (MTT) and cell migration assay on a highly aggressive human breast cancer cell line, MDA‐MB‐231, revealed that one of the PAM salts in the series, namely, PAA.B2 , displayed anticancer properties, and internalization of the gelator salt in the same cell line was confirmed by cell imaging.     

Thermotropic Liquid Crystals Formed by Intermolecular Hydrogen Bonding Interactions

The role of hydrogen bonding in the formation or stabilization of liquid crystalline phases has only recently been appreciated. Following the first, wellestablished examples of liquid crystal formation from the dimerization of aromatic carboxylic acids, through hydrogen bonding, several classes of compounds have recently been synthesized, the liquid crystalline behavior of which is also dependent on intermolecular hydrogen bonds between similar or dissimilar molecules. In this review the main classes of compounds exhibiting liquid crystallinity due to hydrogen bonding are presented to show the diversity of organic compounds that can be used as building elements in liquid crystals. The molecules are either of the rigid-rod anisotropic or amphiphilic types such as molecules appropriately functionalized with pyridyl and carboxyl groups, whose interaction leads to the formation of liquid crystals; amphiphilic carbohydrates and amphiphilic and bolaamphiphilic compounds with multiple hydroxyl groups whose dimerization or association is indispensable for the formation of liquid crystals; and certain amphiphilic carboxylic acids with monomeric or polymeric mesogens and amphiphilic-type compounds bearing different moieties, whose interaction may lead to the formation of mesomorphic compounds. Associated with the macroscopic display of liquid crystalline phases is the supramolecular structure, and therefore rather extended discussion of these structures are included in this review.     

Head‐to‐Tail Intermolecular Hydrogen Bonding of OH and NH Groups with Fluoride

To explore the anion‐recognition ability of the phenolic hydroxyl group and the amino hydrogen, we synthesized three different acridinedione (ADD) based anion receptors, 1 , 2 and 3 , having OH, NH, and combination of OH and NH groups, respectively. Absorption, emission and ¹H NMR spectral studies revealed that receptor 1 , having only a phenolic OH group, shows selective deprotonation of the hydroxyl proton towards F^?, which results in an “ON–OFF”‐type signal in the fluorescence spectral studies. Receptor 2 , which only has an amino hydrogen, also shows deprotonation of the amino hydrogen with F^?, whereas receptor 3 (having both OH and NH groups) shows head‐to‐tail intermolecular hydrogen bonding of OH and NH groups with F^? prior to deprotonation. The observation of hydrogen bonding of the OH and NH groups in a combined solution of 1 and 2 with F^? in a head‐to‐tail hetero‐intermolecular fashion, and the absence of head‐to‐head and tail‐to‐tail intermolecular hydrogen bonding in 1 and 2 with F^?, prove that the difference in the acidity of the OH and NH protons leads to the formation of an intermolecular hydrogen‐bonding complex with F^? prior to deprotonation. The presence of this hydrogen‐bonding complex was confirmed by absorption spectroscopy, 3D emission contour studies, and ¹H NMR titration.     

Hydrogen Bonding as a Supramolecular Tool for Robust OFET Devices

In the present study, we demonstrated the effect of hydrogen bonding in the semiconducting behaviour of a small molecule used in organic field-effect transistors (OFETs). For this study, the highly soluble dumbbell-shaped molecule, Boc-TATDPP based on a Boc-protected thiophene-diketopyrrolopyrrole (DPP) and triazatruxene (TAT) moieties was used. The two Boc groups of the molecule were removed by annealing at 200 °C, which created a strong hydrogen-bonded network of NH-TATDPP supported by additional π–π stacking. These were characterised by thermogravimetric analysis (TGA), UV/Vis and IR spectroscopy, XRD and high-resolution (HR)-TEM measurements. FETs were fabricated with the semiconducting channel made of Boc-TATDPP and NH-TATDPP separately. It is worth mentioning that the Boc-TATDPP film can be cast from solution and then annealed to get the other systems with NH-TATDPP. More importantly, NH-TATDPP showed significantly higher hole mobilities compared to Boc-TATDPP. Interestingly, the high hole mobility in the case of NH-TATDPP was unaffected upon blending with [6,6]-phenyl-C71-butyric acid methyl ester (PC₇₁BM). Thus, this robust hydrogen-bonded supramolecular network is likely to be useful in designing efficient and stable organic optoelectronic devices.     

Computer‐Aided Design of a Sulfate‐Encapsulating Receptor

Custom built : A promising new approach towards more efficient self‐assembled cage receptors through computer‐aided design is demonstrated. The resulting M₄L₆ tetrahedral cage, internally functionalized with accurately positioned urea hydrogen‐bonding groups (see structure; yellow: predicted, blue: experimental, space‐filling: SO₄^2?), proved to be a remarkably strong sulfate receptor in water.

     

Metal-controlled anion-binding tendencies of the thiourea unit of thiosemicarbazones

The terdentate ligand 3 (LH, 2-formylpyridine 4-thiosemicarbazone) forms with FeII and NiII 2:1 complexes of octahedral geometry of formula [MII(LH)2]2+. X-ray diffraction studies have shown that in both complexes the thiourea moieties of the coordinated thiosemicarbazones are exposed to the outside and are prone to establish hydrogen-bonding bifurcate interactions with oxoanions. However, spectrophotometric studies in CHCl3 solution have shown that only the poorly basic NO3 - ion is able to form authentic hydrogen-bond complexes with thiourea subunits, whereas all the other investigated anions (CH3COO-, NO2 -, F-) induce deprotonation of the N-H fragment. The extreme enhancement of the thiourea acidity is based on the coordinative interaction of the sulphur atom with the metal, which stabilises the thiolate form, and it is much higher than that exerted by any other covalently linked electron-withdrawing substituent, for example, --NO2.     

Highly Effective Recognition of Carbohydrates by Phenanthroline‐Based Receptors: α‐ versus β‐Anomer Binding Preference

¹H NMR spectroscopic titrations in competitive and non‐competitive media, as well as binding studies in two‐phase systems, such as phase transfer of sugars from aqueous into organic solvents and dissolution of solid carbohydrates in apolar media revealed both highly effective recognition of neutral carbohydrates and interesting binding preferences of an acyclic phenanthroline‐based receptor 1 . Compared to the previously described acyclic receptors, compound 1 displays significantly higher binding affinities, the rare capability to extract sugars from water into non‐polar organic solutions and α‐ versus β‐anomer binding preference in the recognition of glycosides, which differs from those observed for other receptor systems. X‐ray crystallographic investigations revealed the presence of water molecules in the binding pocket of 1 that are engaged in the formation of hydrogen‐bonding motifs similar to those suggested by molecular modelling for the sugar OH groups in the receptor–sugar complexes. The molecular modelling calculations, synthesis, crystal structure and binding properties of 1 are described and compared with those of the previously described receptors.     

氢键识别超分子聚合物的新进展

近年来,由于氢键作用对聚合物的热力学性质、微观自组装、结晶及液晶行为的重要影响,氢键识别在超分子聚合物的分子设计与结构控制方面的应用受到广泛关注。本文系统介绍了氢键识别体系的类型与性质,以及分子结构、分子内氢键对氢键识别强度的影响,讨论了羧酸与吡啶间氢键识别体系、与核苷相关的氢键识别体系以及四重氢键识别体系在超分子聚合物中的最新应用,主要介绍了氢键识别超分子聚合物的合成、结构、性质及功能。     

What anions do inside a receptor's cavity: a trifurcate anion receptor providing both electrostatic and hydrogen-bonding interactions

The trifurcate receptor 1(3+) forms stable 1:1 complexes with halide and oxo anions in MeCN solution, as shown by spectrophotometric and 1H NMR experiments, and selectively recognizes chloride (lg K(ass) > 7) in the presence of fluoride and bromide. The high stability reflects the receptor's ability to donate up to six hydrogen bonds (from three pyrrole N-H and three C-H fragments, polarized by the proximate positive charge) to the included anion. Addition of an excess of more basic anions (F- and CH3COO-) induces stepwise deprotonation of the N-H groups, an event signalled by the appearance of a bright yellow color. Crystal and molecular structures are reported for the complex with NO3(-) and a capsule consisting of two interconnected trifurcate subunits, one of which includes an H-bound Br- ion, while the other is doubly deprotonated and includes an H-bound water molecule. Finally, evidence is given for the formation in solution of an authentic complex of OH-, in which H-bound hydroxide is included within the cavity of 1(3+).     

Amide-based ligands for anion coordination

Anion recognition is an active area of research in supramolecular chemistry. The rapidly increasing amount of structural data now allows anion coordination chemistry to be formalized in terms of coordination numbers and geometries based on hydrogen-bonding interactions between the host (ligand) and the guest (anion). This Minireview targets just one class of anion receptors, namely, amide-based ligands. The structural data for a series of five anion shapes are compiled according to coordination number, and distinct commonalities are observed within a given anion topology. The results also indicate a number of similarities between the coordination of anions and transition-metal ions.