Proton and Carbon‐13 NMR Studies of Some Tryptamines,Precursors, and Derivatives: Ab Initio Calculations for Optimized Structures

Abstract

Proton and carbon‐13 NMR data are presented for 5‐methoxytryptamine, 1; 6‐methoxytryptamine, 2; N,N‐diisopropyl‐5‐methoxytryptamine, 3, (5‐MeO‐DIPT); and N,N‐diisopropyl‐5‐methoxyindole‐3‐glyoxylamide, 4, at 300 MHz (¹H) and 75 MHz (¹³C) in CDCl₃ at ambient temperature. Compound 3, considered a potential hallucinogen, had been placed into Schedule I of the Controlled Substances Act, effective April 4, 2003, by the U.S. Drug Enforcement Administration. Compound 4 can serve as a possible precursor to 3. We believe that these are the first proton NMR assignments obtained at medium field (7 tesla) using selective homodecoupling and two‐dimensional homonuclear chemical shift correlation spectra (using one or more of the COSY45, COSY90, and COSYLR experiments) for rigorous aryl proton assignments in this group of compounds. Significant observed differences in the proton and carbon‐13 NMR spectra should allow facile distinction of the 5‐methoxy series, 1 and 3, from the 6‐methoxy series, 2. Energy minimizations to obtain optimized structures for each compound were performed at the Hartree–Fock level with the 6‐31G* basis set, and the resulting geometries are discussed. The presented geometry calculations appear to be the most accurate reported to date for 1 based on the basis set employed, and the first HF/6‐31G* structures for compounds 2, 3, or 4. Appreciable geometry differences in 3 and 4 for the pendant sidechain containing the N[CH(CH₃)₂]₂ moiety are noteworthy. Proximity of the carbonyl oxygens in 4 to H2 and H4 is suggested as a possible contributing factor in the deshielding of these protons in the NMR spectrum.     

Determination of N and O‐atoms and N2 (A) Metastable Molecule Densities in the Afterglows of N2‐H2, Ar‐N2‐H2 and Ar‐N2‐O2 Microwave Discharges

Early afterglows of N₂‐H₂, Ar‐N₂‐H₂ and Ar‐N₂‐O₂ flowing microwave discharges are characterized by optical emission spectroscopy. The N and O atoms and the N₂ (A) metastable molecule densities are determined by optical emission spectroscopy after calibration by NO titration for N and O‐atoms and measurements of NO and N₂ band intensities. If an uncertainty of 30% is estimated on N‐atomic density, an inaccuracy of one order of magnitude is obtained on the O and N₂ (A) densities. In N₂‐(0.05‐2.5%)H₂ and Ar‐(1‐50%)N₂‐(0.05‐2.5%) H₂ gas mixtures, the O‐atoms are coming from O₂ impurities in the discharge. Concentrations of N and O‐atoms and of N₂ (A) densities are compared to the ones obtained in Ar‐(5‐50%)N₂‐(0.2‐2.5%) O₂ gas mixtures in which a controlled amount of O₂ is added. (© 2014 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Kinetics and mechanisms of gas‐phase elimination of 2,2‐diethoxyethyl amine and 2,2‐diethoxy‐N,N‐diethylethanamine

The gas‐phase elimination kinetics of 2,2‐diethoxyethyl amine and 2,2‐diethoxy‐N,N‐diethylethanamine (320–380 °C; 40–150 Torr) in a seasoned reaction vessel are homogeneous, unimolecular and obey a first‐order rate law. These elimination processes involve two parallel reactions. The first gives ethanol and the corresponding 2‐ethoxyethenamine. The latter compound further decomposes to ethylene, CO and the corresponding amine. The second parallel reaction produce ethane and the corresponding ethyl ester of an α‐amino acid. The following Arrhenius expressions are given as: For 2,2‐diethoxyethyl amine For 2,2‐diethoxy‐N,N‐diethylethanamine Comparative kinetic and thermodynamic parameters of the overall, the parallel and the consecutive reactions lead to consider two types of mechanisms in terms of a concerted polar cyclic transition state structures. Copyright © 2008 John Wiley & Sons, Ltd.     

Raman spectral investigations on the binary system (acetic acid N,N‐dimethyl formamide)

Raman spectra of acetic acid (AA), N,N‐dimethyl formamide (DMF) and their binary mixtures with varying mole fraction of the AA were recorded in the region 300–1750 cm⁻¹ to investigate the formation of self‐associated dimer and hydrogen‐bonded complexes in a mixed system. The observed spectral features of the CO stretching mode suggest the formation of self‐association with a smaller aggregation size, and also indicate the presence of repulsive interactions between AA and DMF. The existence of two kinds of AA molecules (free and complex) is elucidated from the splitting of the OC O deformation mode. The intermolecular hydrogen‐bond formation and the possibility of attractive interaction between AA and DMF are also examined from the observed spectral features in the CCO symmetric stretching mode of AA, and CN symmetric stretching mode of DMF. Copyright © 2006 John Wiley & Sons, Ltd.     

Computational study of singlet and triplet sulfonylnitrenes insertion into the C―C or C―H bonds of ethylene

Formation of N‐sulfonylaziridines, N‐ethylidenesulfonamides, N‐vinylsulfonamides and 4,5‐dihydro‐1,2,3‐oxathiazole 2‐oxides by the reaction of singlet and triplet trifluoromethyl‐, methyl‐ and tosylnitrenes with ethylene is studied computationally at the B3LYP/6‐311++G(d,p) level of theory in both gas phase and in solution. Singlet sulfonylnitrenes react with ethylene via [1 + 2]‐cycloaddition exothermically to give N‐sulfonylaziridines. Triplet sulfonylnitrenes are formed from the singlet ones by the intersystem crossing with the energy barrier not exceeding 2.5 kcal/mol and react in a stepwise fashion by C‐addition or H‐abstraction. The C‐addition gives rise to the formation of N‐sulfonylaziridines or N‐ethylidenesulfonamides depending on the S―N―C_sp3―C_sp2 dihedral angle, with the barrier to rotation about the N―C_sp3 bond not exceeding 2.5 kcal/mol. The H‐abstraction results in N‐vinylsulfonamides. Transformation of N‐sulfonylaziridines to N‐ethylidenesulfonamides requires to overcome the barrier of 57–60 kcal/mol, N‐ethylidenesulfonamides to 4,5‐dihydro‐1,2,3‐oxathiazole 2‐oxides—74–80 kcal/mol and N‐vinylsulfonamides to N‐ethylidenesulfonamides—about 64 kcal/mol. The use of the polarizable continuum model does not lead to a change of the course of the reaction of trifluoromethanesulfonylnitrene with ethylene and only slightly affects the relative energies of the products, intermediates and transition states. Copyright © 2014 John Wiley & Sons, Ltd.     

Use of N‐chloro‐N‐methyl‐p‐toluenesulfonamide in N‐chlorination reactions

Second‐order rate constants (k₂) were determined for the addition of ten nitrogenous organic compounds (benzylamine, 2,2,2‐trifluoethylamine chlorhidrate, methylamine chlorhidrate, glycine ethyl ester chlorhidrate, glycine, glycylglycine chlorhidrate, morpholine, pyperidine, pyperazine and dimethylamine) to the N‐chloro‐N‐methyl‐p‐toluenesulfonamide (NCNMPT) in the formation reaction of N‐chloramines in aqueous solution at 25 °C and ionic strength 0.5 M. The series of nucleophiles considered is structurally very varied and covers five pK_a units. The kinetic behaviour is similar for all compounds, being the elementary step the transfer of chlorine from the NCNMPT molecule to the nitrogen of the free amino group. These reactions were found first order in both reagents. The values of the rate constants indicate that the more basic amines produce N‐chloramines more readily. Rate constants for the nucleophilic attack are shown to correlate with literature data for some of these nitrogenous organic compounds in their reaction with N‐methyl‐N‐nitroso‐p‐toluenesulfonamide. Both reactions involve that the rate determining step is the attack of nitrogenous compounds upon electrophilic centre (Cl or else NO group). NCNMPT is a particularly interesting substrate, for which has not hitherto been published kinetic information, that allows us to assess the efficiency and the competitiveness of this reaction and compare it with other agents with a Cl⁺ atom. Copyright © 2013 John Wiley & Sons, Ltd.     

Kinetic study of the formation reaction of N‐chloro‐2‐oxazolidinone

The chlorination reactions of 2‐oxazolidinone with hypochlorous acid (HOCl), tert‐butyl hypochlorite (^tBuOCl) and N‐chlorosuccinimide (NCS) were studied at 25 °C, constant ionic strength, and under isolation conditions. The kinetic results obtained in the formation processes of the N‐chloro‐2‐oxazolidinone are summarized in this paper. The kinetics studied showed a first order with respect to the concentration of the each reactant and a complex dependence of the pH on the rate constant. The reactivity order with respect to the chlorinating agent found is k(HOCl) > k(^tBuOCl) > k(NCS). Copyright © 2015 John Wiley & Sons, Ltd.     

Kinetic study of the formation of N‐chloro compounds using N‐chlorosuccinimide

Second‐order rate constants were determined for the chlorination reaction of 2,2,2‐trifluoethylamine and benzylamine with N‐chlorosuccinimide at 25 °C and an ionic strength of 0.5 M. These reactions were found to be of first order in both reagents. According to the experimental results, a mechanism reaction was proposed in which a chlorine atom is transferred between both nitrogenous compounds. Kinetics studies demonstrate that the hydrolysis process of the chlorinating agent does not interfere in the chlorination process, under the experimental conditions used in the present work. Free‐energy relationships were established using the results obtained in the present work and others available in the literature for chlorination reactions with N‐chlorosuccinimide, being the pK_a range included between 5.7 and 11.22. Copyright © 2014 John Wiley & Sons, Ltd.     

Vibrational Spectroscopic and Theoretical Studies of Urea Derivatives with Biochemical Interest: N,N′-Dimethylurea,N,N,N′,N′-Tetramethylurea,and N,N′-Dimethylpropyleneurea

Abstract

Mid-infrared, far-infrared, and Raman vibrational spectroscopic studies were combined with density functional theory (DFT) calculations and normal coordinate force field analyses for N,N′-dimethylurea (DMU), N,N,N′,N′-tetramethylurea (TMU), and N,N′-dimethylpropyleneurea (DMPU: IUPAC name 1,3-dimethyltetrahydropyrimidin-2(1H)-one). The equilibrium molecular geometry of DMU (all three conformers), TMU, and DMPU and the frequencies, intensities, and depolarization ratios of their fundamental infrared (IR) and Raman vibrational transitions were obtained by DFT calculations. The vibrational spectra were fully analyzed by normal coordinate methods as well. A starting force field for DMPU was obtained by adapting corresponding force constants for DMU and TMU, resulting after refinements in the stretching force constants C=O (7.69, 7.30, 7.68 N·cm^?1), C–N (5.16, 5.55, 5.05 N·cm^?1), and C-Me (5.93, 4.00, 4.22 N·cm^?1) for DMU, TMU, and DMPU, respectively. The dominating conformer of liquid DMU was identified as trans-trans, strong intermolecular hydrogen bonding was verified in solid DMU, and weak dipole–dipole association was found in liquid TMU and in DMPU. Special attention was paid to analyzing the methyl group frequencies, which revealed deviations from local C_3v symmetry. A linear correlation was found between the CH stretching force constants and the inverse of the CH bond lengths (1/r ²). The averaged NH stretching frequencies of gaseous, dissolved, and solid urea and of DMU, with variations for hydrogen bonding of different strength, are linearly correlated to the NH stretching force constants. Characteristic skeletal vibrations were assigned for a broad variety of urea derivatives and also for pyrimidine derivatives, which all contain the N₂C=O entity. The very strong IR bands of C=O stretching (1,676 ± 40 cm^?1) and asymmetric CN₂ stretching (1,478 ± 60 cm^?1), and the very intense Raman feature of symmetric CN₂ stretching or ring breathing (757 ± 80 cm^?1), can be recognized as fingerprint bands also for the pyrimidine derivatives cytosine, thymine, and uracil, which all are nucleobases in DNA and RNA nucleotides.     

Steric effect in alkylation reactions by N‐alkyl‐N‐nitrosoureas: a kinetic approach

The alkylation reactions of 4‐(p‐nitrobenzyl)pyridine (NBP), a trap for alkylating agents with nucleophilic characteristics similar to DNA bases, by five N‐alkyl‐N‐nitrosoureas (methyl‐, ethyl‐, propyl‐, butyl‐, and allylnitrosourea) were investigated in 7:3 (v/v) water/dioxane medium in the 5.0–6.5 pH range. Decomposition of alkylnitrosoureas (ANU) gives rise to alkyldiazonium ions that yield NBP‐R adducts directly or through carbocations in certain instances. The NBP alkylation rate constants by these species were determined. The following sequence of alkylating potential was found: methyl‐ > ethyl‐ > allyl‐ > propyl‐ > butyl group. Application of Ingold–Taft correlation analysis to the kinetic results revealed that the NBP alkylation reactions occur mainly through steric control. The values of the molar absorption coefficients of the NBP‐R adducts also reveal the determinant influence of a steric effect in the formation of alkylation adducts. The kinetic results are consistent with the biological activity of ANU. Copyright © 2008 John Wiley & Sons, Ltd.     

A comparative study on the hydrolysis of acetic anhydride and N,N‐dimethylformamide: Kinetic isotope effect,transition‐state structure,polarity, and solvent effect

Recent studies have shown that general‐base assisted catalysis is a viable mechanistic pathway for hydrolysis of smaller anhydrides. Therefore, it is the central purpose of the present work to compare and contrast the number of hydrogen atoms in‐flight and stationary in the transition state structure of the base‐catalyzed mechanisms of 2 hydrolytic reactions as well as determine if any solvent effects occur on the mechanisms. The present research focuses on the hydrolytic mechanisms of N,N‐dimethylformamide (DMF) and acetic anhydride in alkali media of varying deuterium oxide mole fractions. Acetic anhydride has been included in this study to enable comparisons with DMF hydrolysis. Comparative studies may give synergistic insight into the detailed structural features of the activated complexes for both systems. Hydrolysis reactions in varying deuterium oxide mole fractions were conducted in concentrations of 2.0M , 2.5M , and 3.0M for DMF and 0.10M for acetic anhydride at 25°C. Studies in varying deuterium mole fractions allow for proton inventory analysis, which sheds light on the number and types of hydrogen atoms involved in the activated complex. For these systems, this type of study can distinguish between direct nucleophilic attack of the hydroxide ion on the carbonyl center and general‐base catalysis by the hydroxide ion to facilitate a water molecule attacking the carbonyl center. The numerical data are used to discuss 3 possible mechanisms in the hydrolysis of DMF.     

Surface and Bulk Structure Characterization of Proton (3 MeV) Irradiated Polycarbonate

Polycarbonate (Makrofol‐N) thin films were irradiated with protons (3 MeV) under vacuum at room temperature with the fluence ranging from 1×10¹⁴ to 1×10¹⁵ protons cm^?2. The change in surface morphology, optical properties, degradation of the functional groups, and crystallinity of the proton‐irradiated polymers were investigated with atomic force microscopy (AFM), UV‐VIS, and Fourier‐transform infrared (FTIR) spectroscopy, and X‐ray diffraction (XRD) techniques, respectively. AFM shows that the root mean square (RMS) roughness of the irradiated polycarbonate surface increases with the increment of ion fluence. The UV‐VIS analysis revealed that in Makrofol‐N the optical band gap decreased by 30% at highest fluence of 1×10¹⁵ protons cm^?2. The band gap can be correlated to the number of carbon atoms, M, in a cluster with a modified Robertson's equation. The cluster size in the proton‐irradiated Makrofol‐N increased from 112 to 129 atoms with the increase of fluence from 1×10¹⁴ to 1×10¹⁵ protons cm^?2. FTIR spectra of proton (3 MeV) irradiated Makrofol‐N showed a strong decrease of almost all absorption bands at about 1× 10¹⁴ protons cm^?2. However, beyond a higher critical dose an increase in intensity of almost all characteristic bands was noticed. The appearance of a new peak at 3,500 cm^?1 (‐OH groups) was observed at the higher fluences in the FTIR spectra of proton‐irradiated polycarbonate. XRD measurements showed an increase of full width at half maximum (FWHM) and the average intermolecular spacing of the main peak, which may be due to the increase of chain scission and the introduction of ‐OH groups in the proton irradiated polycarbonate.     

An experimental and theoretical study on the preparation of 4,4′‐methylene‐bis(N,N‐dimethylaniline) in ionic liquid

The reaction of N,N‐dimethylaniline with tetrachloromethane in ionic liquid was found to give 4,4′‐methylene‐bis (N,N‐dimethylaniline) in considerable yield. The ionic liquid was prepared from N,N‐dimethylaniline which is also the one of raw materials for the preparation of 4,4′‐methylene‐bis (N,N‐dimethylaniline), and acts as both solvent and catalyst in the reaction. Mild reaction conditions, enhanced rates, improved yields, and reagents' reactivity which is different from that in conventional organic solvents are the remarkable features observed in ionic liquids. In addition, the results of calculations are in good accordance with the experimental outcomes. Copyright © 2016 John Wiley & Sons, Ltd.     

Metal‐assisted regioselectivity in nucleophilic substitutions: a study by Raman spectroscopy and density functional theory calculations

A series of complexes (Fe^II, Cu^II and Ni^II) of the N,O bidentate ligand 6,7‐dichloroquinoline‐5,8‐dione in water was investigated by using Raman spectroscopy, and the experimental peaks were assigned with the help of computed spectra by density functional theory (DFT) calculations. A strong shift to lower wavenumbers was observed for the vibration of the CO group involved in chelation, depending on the type of metal ion. When each complex was used in the substitution reaction by the nucleophilic reagent piperidine, two products having the same molecular composition but showing the substituent in different regions of the molecule were obtained, and moreover their regioselective formation was in agreement with the size of the Raman shifts previously observed for the complexes. This example confirms the potential of the approach involving Raman spectroscopy combined with DFT calculations in the characterization of metal complexes as key intermediates in organic reactions, with the possibility of predicting the metal system capable to achieve the highest selectivity. Copyright © 2010 John Wiley & Sons, Ltd.     

Solvation structure of magnesium,zinc, and alkaline earth metal ions in N,N‐dimethylformamide,N,N‐dimethylacetamide,and their mixtures studied by means of Raman spectroscopy and DFT calculations—Ionic size and electronic effects on steric congestion

The solvation structure of magnesium, zinc(II), and alkaline earth metal ions in N,N‐dimethylformamide (DMF) and N,N‐dimethylacetamide (DMA), and their mixtures has been studied by means of Raman spectroscopy and DFT calculations. The solvation number is revealed to be 6, 7, 8, and 8 for Mg²⁺, Ca²⁺, Sr²⁺, and Ba²⁺, respectively, in both DMF and DMA. The δ (O C N) vibration of DMF shifts to a higher wavenumber upon binding to the metal ions and the shift Δν(= ν_bound − ν_free) becomes larger, when the ionic radius of the metal ion becomes smaller. The ν (N CH₃) vibration of DMA also shifts to a higher wavenumber upon binding to the metal ions. However, the shift Δν saturates for small ions, as well as the transition‐metal (II) ions, implying that steric congestion among solvent molecules takes place in the coordination sphere. It is also indicated that, despite the magnesium ion having practically the same ionic radius as the zinc(II) ion of six‐coordination, their solvation numbers in DMA are significantly different. DFT calculations for these metalsolvate clusters of varying solvation numbers revealed that not only solvent–solvent interaction through space but also the bonding nature of the metal ion plays an essential role in the steric congestion. The individual solvation number and the Raman shift Δν in DMF–DMA mixtures indicate that steric congestion is significant for the magnesium ion, but not appreciable for calcium, strontium, and barium ions, despite the solvation number of these metal ions being large. Copyright © 2006 John Wiley & Sons, Ltd.     

Roles of N?→NN and πN→? Reactions in Heavy-Ion Collisions at Intermediate Energies

Within the framework of the isospin-dependent transport model, the roles of the reactions N? → NN and πN→ ? are investigated through simulating heavy-ion collisions at 1000 MeV/nucleon. The absorption process N? → NN plays an important role for heavy impact systems and small impact parameters than for light impact systems and large impact parameters. The resorption process πN→ ? is of importance for heavy impact systems and large impact parameters than for light impact systems and small impact parameters. Thus the influences of the reaction N? → N N(πN→ ?) on pion production dynamics can be neglected in heavy-ion collisions for smaller(larger) impact parameters and light systems. It is the reaction πN→ ? that causes the anti-correlation of pions and nucleons in the rapidity dependence of the directed flow.     

Gromov-Witten invariants and rational curves on Grassmannians

We study the enumerative significance of the s-pointed genus zero Gromov-Witten invariant on a homogeneous space X. For that, we give an interpretation in terms of rational curves on X.     

Gromov–Witten invariants and rational curves on Grassmannians

We study the enumerative significance of the s$s$-pointed genus zero Gromov–Witten invariant on a homogeneous space X$X$. For that, we give an interpretation in terms of rational curves on X$X$.     

Reactions of chlorination with tert‐butyl hypochlorite (TBuOCl)

The chlorination reactions of nitrogenous organic compounds (2,2,2‐trifluoroethylamine, benzylamine, glycine, and dimethylamine) by tert‐butyl hypochlorite (^tBuOCl) were studied at 25 °C, ionic strength 0.5 M and under isolation conditions. The kinetic results obtained in the formation processes of the corresponding N‐chloramines in acid medium (pH = 5–7) are summarized in this paper. Kinetic studies showed a first order with respect to ^tBuOCl concentration. The chlorination reactions involving benzylamine, glycine and dimethylamine were all first order with respect to nitrogenous compound concentration and approximately ?1 order with respect to proton concentration. The reaction with 2,2,2‐trifluoroethylamine was more complex, and the order of reaction with respect to the amine varied with pH. Copyright © 2014 John Wiley & Sons, Ltd.     

Investigation of N‐carbamoylamino acid nitrosation by {NO + O2} in the solid‐gas phase. Effects of NOx speciation and kinetic evidence for a multiple‐stage process

Nitrosation of N‐carbamoylamino acids (CAA) by gaseous NO + O₂, an interesting synthetic pathway to amino acid N‐carboxyanhydrides (NCA), alternative to the phosgene route, was investigated on N‐carbamoyl‐valine either in acetonitrile suspension or solventless conditions, and compared to the classical nitrosating system NaNO₂ + CF₃COOH (TFA), the latter being quite less efficient in terms of either rate, stoichiometric demand, or further tractability of the product. The rate and efficiency of the NO + O₂ reaction mainly depends on the O₂/NO ratio. Evaluation of the contribution of various nitrosating species (N₂O₃, N₂O₄, HNO₂) through stoichiometric balance showed the reaction to be effected mostly by N₂O₃ for O₂/NO ratios below 0.3, and by N₂O₄ for O₂/NO ratios above 0.4. The relative contribution of (subsequently formed) HNO₂ always remains minor. Differential scanning calorimetry (DSC) monitoring of the reaction in the solid phase by either HNO₂ (from NaNO₂ + TFA), gaseous N₂O₄ or gaseous N₂O₃, provides the associated rate constants (ca. 0.1, 2 and 10⁸ s^?1 at 25°C, respectively), showing that N₂O₃ is by far the most reactive of these nitrosating species. From the DSC measurement, the latent heat of fusion of N₂O_3, 2.74 kJ · mol^?1 at ?105 °C is also obtained for the first time. The kinetics was investigated under solventless conditions at 0°C, by either quenching experiments or less tedious, rough calorimetric techniques. Auto‐accelerated, parabolic‐shaped kinetics was observed in the first half of the reaction course, together with substantial heat release (temperature increase of ca. 20°C within 1–2 min in a 20‐mg sample), followed by pseudo‐zero‐order kinetics after a sudden, important decrease in apparent rate. This kinetic break is possibly due to the transition between the initial solid‐gas system and a solid‐liquid‐gas system resulting from water formation. Overall rate constants increased with parameters such as the specific surface of the solid, the O₂/NO ratio, or the presence of moisture (or equivalently the hydrophilicity of the involved CAA), however without precise relationship, while the last two parameters may directly correlate to the increasing acidity of the medium. Copyright © 2007 John Wiley & Sons, Ltd.