(P-Bis(pentafluorophenyl) substituted) PCP-pincer Ru(II) complexes: A theoretical study of the molecular structure and electronic properties

The differences between the molecular structures of the PCP-pincer complex [RuCl{C₆H₃(CH₂P(C₆H₅)₂)₂-2,6}(PPh₃)] ([RuCl(PCP^H)(PPh₃)], 1) and its tetrakis-pentafluorophenyl substituted analogue [RuCl{C₆H₃(CH₂P(C₆F₅)₂)₂-2,6}(PPh₃)] ([RuCl(PCP^F20)(PPh₃)], 2) have been rationalised by performing calculations on the cations [Ru(PCP^H)(PPh₃)]⁺ (1cat) and [Ru(PCP^F20)(PPh₃)]⁺ (2cat). The molecular interactions between the chloride ligand and the axial rings, as found in 1 and 2, respectively, have been studied computationally in the model systems [(C₆X₅PH₂)₂Cl⁻] (X = H, F). The calculations on 2cat show that in 2 it is most likely the attractive electrostatic interaction between the chloride ligand and the fluorinated phenyl rings that forces the C_ipso atom to occupy an axial position rather than an equatorial one in the observed (X-ray of 2) square pyramidal arrangement. In 1, however, repulsive steric hindrance forces the PPh₃ ligand to take the apical position. The applicability of the TD-DFT method for the calculation of the electronic spectra of the PCP-pincer compounds 1 and 2 has been tested. The results indicate that the excitation energies calculated for both complexes are in a reasonable agreement with the experimental absorption maxima. However, for 1, all the calculated transition energies are underestimated.     

DFT description of the electronic structure and spectromagnetic properties of strongly correlated electronic systems: NiII, CuII and ZnII o-dioxolene complexes

The spectroscopic and magnetic properties of dioxolene complexes of zinc, copper and nickel were studied by DFT calculations on model complexes of formulas [(NH(3))(4)M(II)(SQ)](+) (M=Zn, Ni; SQ=semiquinonato) and [(NH(3))(2)Cu(II)(SQ)](+). Standard approaches such as time-dependent DFT (TDDFT), the Slater transition state (STS), and broken symmetry (BS) were found to be unable to completely account for the physical properties of the systems, and complete active space-configuration interaction (CAS-CI) calculations based on the Kohn-Sham (KS) orbitals was applied. The CAS-CI energies, properly corrected with multireference perturbation theory (MR-PT), were found to be in good agreement with experimental data. We present here a calculation protocol that has a low CPU cost/accuracy ratio and seems to be very promising for interpreting the properties of strongly correlated electronic systems in complexes of real chemical size.     

Excited-state properties and environmental effects for protonated schiff bases: a theoretical study.

Complete active space self-consistent field (CASSCF), multireference configuration interaction (MRCI), density functional theory (DFT), time dependent DFT (TDDFT) and the singles and doubles coupled-cluster (CC2) methodologies have been used to study the ground state and excited states of protonated and neutral Schiff bases (PSB and SB) as models for the retinal chromophore. Systems with two to four conjugated double bonds are investigated. Geometry relaxation effects are studied in the excited pipi* state using the aforementioned methods. Taking the MRCI results as reference we find that CASSCF results are quite reliable even though overshooting of geometry changes is observed. TDDFT does not reproduce bond alternation well in the pipi* state. CC2 takes an intermediate position. Environmental effects due to solvent or protein surroundings have been studied in the excited states of the PSBs and SBs using a water molecule and solvated formate as model cases. Particular emphasis is given to the proton transfer process from the PSB to its solvent partner in the excited state. It is found that its feasibility is significantly enhanced in the excited state as compared to the ground state, which means that a proton transfer could be initiated already at an early step in the photodynamics of PSBs.     

Effects of the Au(I)–Au(I) closed‐shell attraction on the electronic and phosphorescent properties in a series of coordination compounds: A theoretical study

The Au(I)–Au(I) closed‐shell or aurophilic attraction has been the subject of interest in the experimental and theoretical chemistry fields, due to the intriguing properties associated to it. The presence of phosphorescence in “aurophilic” compounds has been addressed to a wide range of applications, but it has not yet been fully understood. A theoretical study on the electronic and phosphorescent properties of the following series of dinuclear gold complexes has been performed: [Au₂(dmpm) (i‐mnt)] ( 1 ), [Au₂(μ‐Me‐TU) (μ‐dppm)] ( 2 ), and [Au₂(μ‐G)(μ‐dmpe)] ( 3 ). Full geometry optimizations at the second‐order Møller–Plesset perturbation theory (MP2) were carried out for each of the species. These calculations made evident that, at the ground‐state geometry, the Au(I) cations allocated at the center of the ring show a short Au–Au distance below the sum of the van der Waals radii, at the range of the aurophilic attraction. An intermolecular Au(I)–Au(I) closed‐shell attraction for a pair of the systems under study is found. This attraction is comparable to that of the hydrogen bonds. The phosphorescent properties experimentally observed for this series were also characterized through ab initio techniques. The obtained results allow to fit reasonably the excitation energies with the experimental data and to identify a correlation between the strength of the Au(I)–Au(I) interaction and the phosphorescent behavior. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Quantum chemistry of quantum size‐effects in semiconductors: Small clusters electronic structure calculations

Ab initio RHF SCF calculations are used for some small clusters M_xX_y, where M=Cd, Ag; X=S, I; and x, y≤7. Variation of electronic structure with size for some clusters with the bulklike tetrahedral coordination and with the lower symmetry allows one to predict their possible geometries which are compared with experimental data on the existence of the clusters. The chemical‐bonding factor (the chemical nature of bounded atoms, coordination number for metal and nonmetal atoms, hybridization, etc.) is of more importance for properties of the clusters than is the familiar quantum confinement effect of semiconductor clusters. The essential difference in regularities of small cluster formation is analyzed for CdS‐ and AgI‐based structures. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 71: 337–341, 1999     

Photochemical and electronic properties of conjugated bis(azo) compounds: an experimental and computational study

We have investigated the photophysical, photochemical and electrochemical properties of two bis(azo) derivatives, (E,E)-m-1 and (E,E)-p-1. The two compounds, which can be viewed as being composed of a pair of azobenzene units sharing one of their phenyl rings, differ only for the relative position of the two azo groups on the central phenyl ring-meta and para for m-1 and p-1, respectively. The UV-visible absorption spectra and photoisomerisation properties are noticeably different for the two structural isomers; (E,E)-m-1 behaves similarly to (E)-azobenzene, while (E,E)-p-1 exhibits a substantial red shift in the absorption bands and a decreased photoreactivity. The three geometric isomers of m-1, namely the E,E, E,Z and Z,Z isomers, cannot be resolved in a mixture by absorption spectroscopy, while the presence of three distinct species can be revealed by analysis of the absorption changes observed upon photoisomerisation of (E,E)-p-1. Quantum chemical ZINDO/1 calculations of vertical excitation energies nicely reproduce the observed absorption changes and support the idea that, while the absorption spectra of the geometrical isomers of m-1 are approximately given by the sum of the spectra of the constituting azobenzene units in their relevant isomeric form, this is not the case for p-1. From a detailed study on the E-->Z photoisomerisation reaction it was observed that the photoreactivity of an azo unit in m-1 is influenced by the isomeric state of the other one. Such observations indicate a different degree of electronic coupling and communication between the two azo units in m-1 and p-1, as confirmed by electrochemical experiments and quantum chemical calculations. The decreased photoisomerisation efficiency of (E,E)-p-1 compared to (E,E)-m-1 is rationalised by modelling the geometry relaxation of the lowest pi-pi* state. These results are expected to be important for the design of novel oligomers and polymers, based on the azobenzene unit, with predetermined photoreactivity.     

A combined gas-phase photoelectron spectroscopic and theoretical study of Zeise's anion and its bromine and iodine analogues

Shining light on Zeise: In a study of Zeise's anion, [PtCl(3)(C(2)H(4))](-), and its bromine and iodine analogues, electronic structure information for each species, derived from spectral features, is assigned through calculations at the coupled cluster level of theory. The calculations indicate that the electron binding energies decrease with halogen size and that there is a synergistic η(2) interaction between C(2)H(4) and the PtX(3)(-) anions.     

An insight into a novel class of self-assembled porphyrins: geometric structure, electronic structure, one- and two-photon absorption properties

We have theoretically investigated a series of butadiyne-linked porphyrin derivatives that exhibit large two-photon absorption (TPA) cross sections in the visible-IR range. The electronic structure, one-photon absorption (OPA), and TPA properties have been studied in detail. We found that the introduction of a butadiyne linkage and the increase of the molecular dimensionality from monomer to dimer determine the OPA intensities of Q band and Soret band, respectively. A most important role for the enhancement of the TPA cross section is played by introducing a butadiyne bridge. The complementary coordination and the combination of the terminal free base and the core zinc porphyrin are also two effective factors for the enhancement of the TPA efficiency. The dimer with two porphyrins linked at meso-positions by a butadiyne linkage results in a maximum TPA cross section (79.35 x 10(-48) cm4 s per photon). Our theoretical findings are consistent with the recent experimental observations. This series of porphyrin derivatives as promising TPA materials are the subject of further investigation.     

A theoretical study of the structure and bonding of UOX4 (X = F, Cl, Br, I) molecules: the importance of inverse trans influence.

During nitroxide-mediated polymerization (NMP) in the presence of a nitroxide R2(R1)NO*, the reversible formation of N-alkoxyamines [P-ON(R1)R2] reduces significantly the concentration of polymer radicals (P*) and their involvement in termination reactions. The control of the livingness and polydispersity of the resulting polymer depends strongly on the magnitude of the bond dissociation energy (BDE) of the C-ON(R1)R2 bond. In this study, theoretical BDEs of a large series of model N-alkoxyamines are calculated with the PM3 method. In order to provide a predictive tool, correlations between the calculated BDEs and the cleavage temperature (T(c)), and the dissociation rate constant (k(d)), of the N-alkoxyamines are established. The homolytic cleavage of the N-OC bond is also investigated at the B3P86/6-311++G(d,p)//B3LYP/6-31G(d), level. Furthermore, a natural bond orbital analysis is carried out for some N-alkoxyamines with a O-C-ON(R1)R2 fragment, and the strengthening of their C-ON(R1)R2 bond is interpreted in terms of stabilizing anomeric interactions.     

A theoretical study on three conformational structures of 2,6‐distyrylpyridine

Ab initio methods at the levels HF/cc‐pVDZ, HF/6‐31G(d,p), MP2/cc‐pVDZ, and MP2/6‐31G(d,p), as well as methods based on density functional theory (DFT) employing the hybrid functional B3LYP with the basis sets cc‐pVDZ and 6‐31G(d,p), have been applied to study the conformers of 2,6‐distyrylpyridine. Bond distances, bond angles, and dihedral angles have been calculated at the B3LYP level. The calculated values were in good agreement with those measured by X‐ray diffraction analysis of 2,6‐distyrylpyridine. The values calculated using the Hartree‐Fock method and second‐order perturbation theory (MP2) were inconsistent. The optimized lowest‐energy geometries were calculated from the reported X‐ray structural data by the B3LYP/cc‐pVDZ method. Three conformations, A, B, and C, were proposed for 2,6‐distyrylpyridine. Calculations at the three levels of theory indicated that conformation A was the most stable structure, with conformations C and B being higher in energy by 1.10 and 2.57 kcal/mol, respectively, using the same method and basis function. The same trend in the relative energies of the three possible conformations was observed at the two levels of theory and with the different basis sets employed. The reported X‐ray data were utilized to optimize total molecular energy of conformation A at the different calculation levels. The bond lengths, bond angles, and dihedral angles were then obtained from the optimized geometries by ab initio methods and by applying DFT using the two basis functions cc‐pVDZ and 6‐31G(d,p). The values were analyzed and compared. The calculated total energies, the relative energies of the molecular orbitals, the gap between them, and the dipole moment for each conformational structure proposed for 2,6‐distyrylpyridine are also reported. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Intramolecular carbolithiation of 2,6-dilithio-1,6-heptadienes: an experimental and theoretical study

2,6-Dilithio-1,6-heptadienes 3 undergo intramolecular carbolithiation in Et(2)O/N,N,N',N'-tetramethylethylenediamine (TMEDA) at the lithiated double bonds to afford 1,2-bis(lithiomethyl)cyclopentenes 5. Reaction of these dianions with electrophiles affords a number of 1,2-difunctionalized cyclopentene derivatives 7-10. The ease of carbolithiation of 2,6-dilithio-1,6-heptadiene (3a) compared to that of 2-lithio-1,6-heptadiene (14) has been studied experimentally. A series of ab initio molecular-orbital calculations on the course of the reaction were carried out and the results were compared to those for the corresponding intramolecular carbolithiation of an isolated double bond. The Li-C interactions found in the transition state by this theoretical study support a carbolithiation pathway for the cyclization of 2,6-dilithio-1,6-heptadienes.     

Spectroscopic and theoretical study of vibrational spectra of hydrogen‐bonded tropolone

Theoretical simulation of the bandshape and fine structure of the ν_s stretching band is presented for tropolone‐H and tropolone‐D taking into account an adiabatic coupling between the high‐frequency O–H(D) stretching and the low‐frequency intra‐ and intermolecular OO stretching modes, and linear and quadratic distortions of the potential energies for the low‐frequency vibrations in the excited state of the O–H(D) stretching vibration. In order to determine the low‐frequency vibrations, the experimental spectra of the polycrystalline tropolone in the far‐infrared and the low‐frequency Raman range have been recorded for the first time. The experimental frequencies in the low‐frequency region are compared with the results of the HF/6‐31G** and Becke3LYP/6‐31G** calculations carried out for the tropolone dimer. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 73: 275–282, 1999     

A theoretical case study of type I and type II beta-turns

NMR chemical shielding anisotropy tensors have been computed by employing a medium size basis set and the GIAO-DFT(B3LYP) formalism of electronic structure theory for all of the atoms of type I and type II beta-turn models. The models contain all possible combinations of the amino acid residues Gly, Ala, Val, and Ser, with all possible side-chain orientations where applicable in a dipeptide. The several hundred structures investigated contain either constrained or optimized phi, psi, and chi dihedral angles. A statistical analysis of the resulting large database was performed and multidimensional (2D and 3D) chemical-shift/chemical-shift plots were generated. The (1)H(alpha-13)C(alpha), (13)C(alpha-1)H(alpha-13)C(beta), and (13)C(alpha-1)H(alpha-13)C' 2D and 3D plots have the notable feature that the conformers clearly cluster in distinct regions. This allows straightforward identification of the backbone and side-chain conformations of the residues forming beta-turns. Chemical shift calculations on larger For-(L-Ala)(n)-NH(2) (n=4, 6, 8) models, containing a single type I or type II beta-turn, prove that the simple models employed are adequate. A limited number of chemical shift calculations performed at the highly correlated CCSD(T) level prove the adequacy of the computational method chosen. For all nuclei, statistically averaged theoretical and experimental shifts taken from the BioMagnetic Resonance Bank (BMRB) exhibit good correlation. These results confirm and extend our previous findings that chemical shift information from selected multiple-pulse NMR experiments could be employed directly to extract folding information for polypeptides and proteins.     

Amphiphilic organic ion pairs in solution: a theoretical study.

The macroscopic manifestation of hydrophobic interactions for amphiphilic organic ion pairs (tetraalkylammonium-anion) has been shown experimentally by measuring their association constants and their affinity with the organic phase. Beyond a certain size, there is a direct relation between association constants and chain lengths in tetraalkylammonium ions. We propose to cast a bridge between these results and geometrical properties considered at the level of a single ion pair by means of quantum chemistry calculations performed on model systems: trimethylalkylammonium-pentyl sulfate instead of tetraalkylammonium-dodecyl sulfate. Two limiting cases are considered: head-to-head configurations, which yield an optimal electrostatic interaction between polar heads, and parallel configurations with a balance between electrostatic and hydrophobic interactions. All properties (geometries, complexation energies, and atomic charges) were obtained at the MP2 level of calculation, with water described by a continuum model (CPCM). Dispersion forces link hydrocarbon chains of tetraalkylammonium ions and pentyl sulfate, thus yielding (for the largest ion pairs) parallel configurations favored with respect to head-to-head geometries by solute-solvent electrostatic interactions. Given the small experimental association energies, we probe the accuracy limit of the MP2 and CPCM methods. However, clear trends are obtained as a function of chain length, which agree with the experimental observations. The calculated monotonic stabilization of ion pairs when the hydrocarbon chain increases in length is discussed in terms of electrostatic interactions (between ions and between ion pairs and water), dispersion forces, and cavitation energies.     

Ab initio study on the electronic structures of styrene in the Franck-Condon region

The electronic structures of styrene in the Franck‐Condon region have been theoretically examined by means of ab initio complete active space self‐consistent field (CASSCF) and the second order multireference Møller‐Plesset calculations. The optimized structure of styrene in S₀ is planar but the torsional motion of the phenyl group is very floppy. The S₁ state is assigned to the local π–π* excitation within the benzene ring. On the other hand, S₂, above S₁ by 0.561 eV, is assigned to a state that resembles the so‐called V‐state of ethylene. The transition intensity of S₀–S₁ is weak, while that of S₀–S₂ is strong. This is in good agreement with the experimental absorption spectrum where the S₀–S₁ and S₀–S₂ transitions are in the energy range of 290–220 nm. The optimized geometry of S₁, characterized by an enlarged benzene ring and its vibrational analyses, further justifies the assignment of the S₁ state. © 2002 Wiley Periodicals, Inc. J Comput Chem 9: 928–937, 2002     

Reinvestigation of the GaMn structure and theoretical studies of its electronic and magnetic properties

The crystal structure of the binary gallide compound GaMn is reinvestigated using X-ray diffraction. The structure is quite different from that proposed previously. Although GaMn is reported to crystallize with the Al₈Cr₅ structure type, space group R3m, we found that the centrosymmetric space group , with a=12.605(2) Å and c=8.0424(11) Å, was more accurate. Moreover, the atomic positions and the atomic displacement parameters, which are missing in the previous study, are now refined. Thereafter, band structure calculations have been performed using the TB-LMTO-ASA method to understand the electronic and magnetic properties of this compound. Analyses from the band structure, the density of states and the magnetic moments obtained using spin-polarized calculations show the stability of two different magnetic models relative to the nonmagnetic one.     

Local structure of highly dispersed lead species incorporated within zeolite: experimental and theoretical studies

XAFS (both XANES and FT-EXAFS) measurements revealed that the Pb²⁺ /ZSM-5 catalyst prepared from precursor H-ZSM-5 by a conventional ion-exchange method includes a highly dispersed 3-fold coordinated Pb²⁺ ion species within the zeolite framework. UV-irradiation of Pb²⁺ /ZSM-5 led to effective decomposition of NO and N₂O producing N₂. The photocatalytic decomposition of NO is found to be slightly preferable than that of N₂O. The isolated Pb²⁺ ions play a significant role in the decomposition of pollutant NO _x . Ab initio and DFT quantum chemical studies at the HF/Lanl2dz and B3PW91/Lanl2dz levels further shed light on local structures of the Pb²⁺ active site of lead-containing zeolites, as well as on their interactions with pollutant NO and N₂O molecules. In agreement with experiments, 3-fold coordination was found to be the most favorable state for the Pb²⁺ site within the zeolite framework.     

Ab initio and DFT study of the electronic structures and spectroscopic properties of pyrene ligands and their cyclometalated complexes

Two ligands 1‐diphenylphosphinopyrene (1‐PyP) ( L ₁ ), 1,6‐bis(diphenylphosphino)‐pyrene (1,6‐PyP) ( L ₂ ) and their cyclometalated complexes [Pt(dppm)(1‐PyP‐H)]⁺ ( 1 ), [Pt₂(dppm)₂(1,6‐PyP‐H₂)]²⁺ (dppm = bis(diphenylphosphino)methane ( 2 ), and [Pd(dppe)(1‐PyP‐H)⁺ (dppe = bis(diphenylphosphino)ethane) ( 3 ) are investigated theoretically to explore their electronic structures and spectroscopic properties. The ground‐ and excited‐state structures are optimized by the density functional theory (DFT) and single‐excitation configuration interaction method, respectively. At the time‐dependent DFT (TDDFT) and B3LYP level, the absorption and emission spectra in solution are obtained. As revealed from the calculations, the lowest‐energy absorptions of 1 and 3 are attributed to the mixing ligand‐to‐metal charge transfer (CT)/intraligand (IL)/ligand‐to‐ligand CT transitions, while that of 2 is attributed to the IL transition. The lowest‐energy phosphorescent emissions of the cyclometalated complexes are attributed to coming from the ³ILCT transitions. With the increase of the spin‐orbit coupling effect, the phosphorescence intensities and the emissions wavelength are correspondingly increased. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011