磷酸二甲酯阴离子(DMP~-)与一价、二价金属离子 相互作用的理论研究

在B3LYP、HF和MP2水平上运用全电子从头算(AE)和相对论有效实势(RECP)及6-311+G**和LanL2DZ基组计算Ⅰa、Ⅰb、Ⅱa和Ⅱb族金属离子与磷酸二甲酯阴离子(DMP-)的相互作用。 RECP用于除Li+、Be2+外所有的金属离子。 对Na+、K+、Cu+、Mg2+、Ca2+、Zn2+用AE和RECP 2种方法处理。 结果表明:RECP能可靠地用于重金属离子络合物; 二价金属离子络合物(DMP-—M2+)比一价金属离子络合物 (DMP-—M+)稳定;二价金属离子(M2+)可能比一价金属离子(M+)更易使多核苷酸折叠。     

磷酸二甲酯阴离子与二价金属离子相互作用的研究

在B3LYP/6-31G(d, p)水平上,用全电子分别研究了Mg2+、Ca2+、Mn2+、Co2+、Ni2+、Cu2+和Zn2+与磷酸二甲酯(DMP-)“双齿”配位模式下的相互作用,且由4个水分子((H2O)4)“饱和”各金属离子六配位模式下的其它位点。结果表明:这种配位模式下,DMP-对上述金属离子的选择性顺序为:Cu2+>Ni2+>Zn2+>Co2+>Mg2+>Mn2+>Ca2+,和Irving-Williams序列基本一致。且具有未充满d层轨道的金属对配体的变化“响应”明显。通过NBO(自然键轨道)方法对配合物电荷布居分析可得出主族金属离子与配体间以静电相互作用为主,非主族金属离子配合物中存在一定的共价作用的结论,同时关于配合物各部分间键轨道相互作用的分析部分的反映了金属离子与配体的作用实质。     

溶液中Zn2+与腺嘌呤异构体间相互作用的理论研究

用B3LYP/6-311++G**方法和PCM及Onsager模型研究了Zn2+与腺嘌呤异构体在溶液中的11种较为稳定配合物. 结果显示, 这些配合物在溶液中的稳定性顺序与气相中明显不同, 其结合位点表现出如下的规律性, 在亚氨基类配合物中, Zn2+与腺嘌呤的N7、N6位结合比与N1、N6位结合形成的配合物更稳定; 氨基类配合物中, Zn2+以"双齿"形式与腺嘌呤异构体上的氮结合时的优先顺序为(N3和N9)>(N7和N6)>(N1和N6). 研究表明, 不论气相还是溶液相, 孤立的腺嘌呤分子内的质子转移较困难, 结合Zn2+后也不能明显降低关键步骤的活化能; 结合Cu2+却能明显地降低气相中关键步骤的活化能, 但溶剂效应却不利于Cu2+引发腺嘌呤分子内的质子转移.     

气相中环丁烯负离子与N2O反应机理的理论研究

采用B3LYP 和MP2两种计算方法,在6-31++G(d, p)的基组下,对气相中环丁烯负离子与N2O反应的微观机理进行了较为系统的计算研究。结果表明,该反应存在两条反应通道,每条反应通道又包含着三条反应路径,产物分别为乙烯基重氮甲基负离子与甲醛,同时也应能检测到少量的环丁烯酮负离子及N2等产物。其中,通道1是主反应通道,路径1为主反应路径,路径3是路径1、2的竞争反应。理论计算结果与实验预测基本一致。     

腺嘌呤和质子化腺嘌呤的结构和振动光谱

用密度泛函方法B3LYP/aug-cc-pVTZ分析了腺嘌呤和质子化腺嘌呤的低能稳定异构体的结构和振动光谱. 结果发现, 对于中性腺嘌呤分子, 腺嘌呤的异构体N9H比N7H的能量低32.76 kJ·mol-1(在极化连续模型下为6.28 kJ·mol-1). 基于标度量子力场方法所得到的势能分布, 对异构体N9H的部分振动基频重新进行了归属. 在极化连续模型下, 质子化腺嘌呤分子有5种低能稳定构型, 其中N1位质子化的9-位氢腺嘌呤最为稳定. 基于振动模式分析, 对这种最稳定构型的振动基频进行了归属, 并对腺嘌呤在pH=1的高氯酸溶液中的实验拉曼光谱进行了指认.     

气相中环丁烯负离子与N2O反应机理的理论研究

采用MP2和B3LYP两种计算方法,在6-31 G(d,p)的基组下,对气相中环丁烯负离子与N2O反应的微观机理进行了较为系统的计算研究,并在相同基组下进一步用QCISD方法在MP2优化构型的基础上进行了单点能校正.结果表明,该反应存在两条反应通道,每条反应通道又包含着三条反应路径,产物分别为乙烯基重氮甲基负离子与甲醛,同时也应能检测到少量的环丁烯酮负离子及N2等产物.其中,通道1是主反应通道,路径1为主反应路径,路径3是路径1和2的竞争反应.理论计算结果与实验预测基本一致.     

电场中B_2分子特性研究

利用密度泛函理论(DFT)B3LYP/6-3l1＋G(2d)方法研究在不同方向电场(0～＋0.02 a.u.)作用下的B2分子的基态键长、总能量、偶极矩、最高占据轨道(HOMO)能量、最低空轨道(LUMO)能量、能隙及势能曲线的变化规律. 结果表明: 在一定外加电场范围内, 随电场强度的增大, 分子键长变大; 总能量降低; 偶极矩增大; HOMO能级、LUMO能级均降低; 能隙依赖外电场方向, 平行分子轴(Z)方向电场使能隙递减, 垂直分子轴(X)方向电场使能隙递增; 分子势能降低, 平行分子轴线(Z)方向电场对分子势能的影响随着核间距的增大而增大, 原有的“势能平台”遭到破坏.     

芴-硫芴共聚物的电子结构和光谱性质的理论研究

用DFT-B3LYP方法对低聚物(PF30T)_n [n(芴)∶n(硫芴)＝2∶1, 物质的量之比, n＝1～4], (PF50T)_n [n(芴)∶n(硫芴)＝1∶1, 物质的量之比, n＝1～4]体系全优化, 得到两系列低聚物的电离能(IP_(a,v))、电子亲和势(EA_(a,v))、空穴抽取能(HEP)、电子抽取能(EEP). 在此基础上用ZINDO和TD-DFT方法计算吸收光谱, 分析了两个系列的HOMO-LUMO能隙随着n递增的变化趋势及硫芴含量对低聚物电子结构和光谱性质的影响, 推断了高聚物的电子和光谱性质. 用ab initio CIS方法优化了低聚物的S₁激发态结构并分析了其与发射光谱的关系. 研究显示: 2,8位引入的硫芴基团, 破坏了链的共轭, 而且随着硫芴含量的增加, HOMO-LUMO能隙变大, 光谱蓝移; 激发态结构趋于共面化.     

N-亚苯基氨基酰胺气相高温分解反应机理的密度泛函研究

利用密度泛函理论研究了N-亚苯基氨基酰胺气相高温分解生成苯腈和苯甲酰胺的反应机理。首先用B3LYP／6-31G(d,p)方法优化反应中反应物、过渡态、中间体及产物的几何构型,通过振动分析确认了过渡态的结构,并通过内稟反应坐标方法(IRC)确认能量最低的反应途径。本文报道了三条可能的反应通道,包括一条直接协同高温分解反应和两条先成环后协同高温分解反应途径,其中直接协同高温分解反应由于能垒低,因此发生的几率较大     

NO双分子和二聚体与Cu2作用的理论计算

采用密度泛函理论(DFT)中的B3LYP方法，在Lanl2DZ基组下，对NO双分子和二聚体与铜原子簇相互作用的结构进行了研究. 结果表明，NO可以在铜表面相邻的两个铜原子上形成稳定的双分子吸附和二聚体吸附，而在双分子吸附形式中NO以氮原子吸附在铜上的构型最稳定，且顶点吸附的稳定性不如非顶点吸附形式.在二聚体吸附形式中， N－N键被加强，而N－O键被削弱的程度大于双分子吸附形式，说明二聚体的形成有利于NO在金属铜表面的直接分解.同时电荷布居分析表明，单重态的二聚体与铜作用时，铜原子上的平均电荷达到0.66 e,说明在这种吸附形式中铜被离子化的倾向较大，而且这种吸附形式最有利于NO的分解.这些结果说明NO经二聚体形式在铜表面直接催化分解是可行的.     

Theoretical Studies on the Interaction between Metal Cations and Cytosine, Guanine

1 INTRODUCTION The study on the interaction between metal cations and biomacromolecules is one of the important subjects of bioinorganic chemistry. As is well known, the metal ions play an important role in keeping the basic structures and realizing the normal functions of biomacromolecules like proteins, nucleic acid, and peptide hormone[1]. However, at present the interac- tion mechanism has not been understood yet. In recent years remarkable achievements have been obtained in this fie…     

铂配位的腺嘌呤质子化的理论研究

用量子化学从头算研究一系列平面四方金属配体作用于腺嘌呤N₇位点对其质子化的影响。计算结果表明气相中，配合物质子化能力主要受长程静电效应影响，不同金属离子的影响差别甚微。综合考虑极性溶剂影响后长程静电效应影响显著降低。NBO电荷布居分析表明质子化位点电子云密度的变化直接影响该位点质子化能力。     

Interaction Structure and Affinity of Zwitterionic Amino Acids with Important Metal Cations (Cd2+, Cu2+, Fe3+, Hg2+, Mn2+, Ni2+ and Zn2+) in Aqueous Solution: A Theoretical Study

Heavy metals are non-biodegradable and carcinogenic pollutants with great bio-accumulation potential. Their ubiquitous occurrence in water and soils has caused serious environmental concerns. Effective strategies that can eliminate the heavy metal pollution are urgently needed. Here the adsorption potential of seven heavy metal cations (Cd²⁺, Cu²⁺, Fe³⁺, Hg²⁺, Mn²⁺, Ni²⁺ and Zn²⁺) with 20 amino acids was systematically investigated with Density Functional Theory method. The binding energies calculated at B3LYP-D3/def2TZVP level showed that the contribution order of amino acid side chains to the binding affinity was carboxyl > benzene ring > hydroxyl > sulfhydryl > amino group. The affinity order was inversely proportional to the radius and charge transfer of heavy metal cations, approximately following the order of: Ni²⁺ > Fe³⁺ > Cu²⁺ > Hg²⁺ > Zn²⁺ > Cd²⁺ > Mn²⁺. Compared to the gas-phase in other researches, the water environment has a significant influence on structures and binding energies of the heavy metal and amino acid binary complexes. Collectively, the present results will provide a basis for the design of a chelating agent (e.g., adding carboxyl or a benzene ring) to effectively remove heavy metals from the environment.     

Theoretical Study of the Metal–Metal Interaction in Dipalladium(I) Complexes

Correlated ab initio calculations have been performed on three dipalladium(I) complexes. These compounds differ both by the metal–metal interaction and by the metal–ligand interaction. The [Pd₂Cl₂(μ −H₂PCH₂PH₂)₂] complex exhibits a σ overlap between the two binding metallic orbitals and has no bridging ligand. In [Pd₂Cl₄(μ −CO)₂]²⁻, the leading interaction between the two palladium involves a π overlap between the metallic orbitals and goes through the two bridging CO ligands. In [Pd₂Cl₂(μ −CO)(μ −H₂PCH₂ PH₂)₂], a single CO ligand bridges the two palladium atoms which interact through a hybrid σ–δ overlap. The three compounds also differ by the metal–metal distances. Surprisingly enough, while the palladium atoms are formally d ⁹ in all these complexes, none of them is paramagnetic. We propose here a detailed analysis of the electronic structures of these compounds and rationalize their chemical structures as well as the role of back-donation in the CO bridged compounds. Finally, since highly correlated treatments are used to describe these complexes, a detailed study of the role of both non-dynamical and dynamical correlations is performed. Concerning the [Pd₂Cl₄(μ −CO)₂]²⁻ complex, this analysis has revealed that the complex is not bound at the lowest correlated levels of calculation and therefore dynamical correlation is alone responsible for its binding energy.     

Study of the Complexation Behavior of Calixarene with Transition Metal Cations by UV—vis and Fluorescent Spectra

A new fluorescent compound based on calix[4] arene skeleton was synthesized.Its complexation ability with transition metal ions,such as Fe^3 ,Co^2 ,Ni^2 ,Cu^2 ,Zn^2 and Ag^ ,Was investigated by UV-vis and fluorescent spectra.     

A DFT/PCM Study on the Affinity of Salinomycin to Bind Monovalent Metal Cations

The affinity of the polyether ionophore salinomycin to bind IA/IB metal ions was accessed using the Gibbs free energy of the competition reaction between SalNa (taken as a reference) and its rival ions: [M⁺-solution] + [SalNa] → [SalM] + [Na⁺-solution] (M = Li, K, Rb, Cs, Cu, Ag, Au). The DFT/PCM computations revealed that the ionic radius, charge density and accepting ability of the competing metal cations, as well as the dielectric properties of the solvent, have an influence upon the selectivity of salinomycin. The optimized structures of the monovalent metal complexes demonstrate the flexibility of the ionophore, allowing the coordination of one or two water ligands in SalM-W₁ and SalM-W₂, respectively. The metal cations are responsible for the inner coordination sphere geometry, with coordination numbers spread between 2 (Au⁺), 4 (Li⁺ and Cu⁺), 5/6 (Na⁺, K⁺, Ag⁺), 6/7 (Rb⁺) and 7/8 (Cs⁺). The metals’ affinity to salinomycin in low-polarity media follows the order of Li⁺ > Cu⁺ > Na⁺ > K⁺ > Au⁺ > Ag⁺ > Rb⁺ > Cs⁺, whereas some derangement takes place in high-dielectric environment: Li⁺ ≥ Na⁺ > K⁺ > Cu⁺ > Au⁺ > Ag⁺ > Rb⁺ > Cs⁺.     

过渡金属离子对HPAsMoVO杂多酸的氧化性能的影响

用H2-TPR方法研究了过渡金属离子及其含量对杂多酸-HxPAs0.2Mo10VOy的氧化性能的影响,并在固定床反应器上考察了M0.2HxPAs0.2Mo10VOy(M=Fe3 、Co2 、N i2 和Cu2 )催化剂对异丁烷选择性氧化的催化性能.研究结果表明用过渡金属离子取代杂多酸中的质子,可以在较大程度上增强杂多酸的低温氧化能力,其中Fe3 对增强杂多酸的催化活性最为明显,而Cu2 却有利于提高目的产物甲基丙烯酸的选择性.