Fragment chemistry of the hydrogen thioperoxide molecule; energy, chemical potential and hardness

In this paper we present a complete theoretical study of the hydrogen thioperoxide molecule (HSOH). We characterize the internal rotation by studying the evolution of the energy, chemical potential and hardness along the torsional angle. We have found that hydrogen thioperoxide in its electronic singlet state is a gauche molecule. Barrier heights, activation chemical potential and activation hardness have been obtained, and it has been found that the trans barrier is lower than the cis one. Good agreement of rotation barriers is obtained on the basis of comparisons with the available literature experimental data for the HOOH and HSSH parent molecules. Another important result is that the maximum hardness principle is verified for the torsional motion. On the other hand, we characterize the thermochemistry of chemical reactions leading to formation of HSOH from the electronic properties associated with the free constituent fragments. The procedure, which involves the use of Sanderson's rule to estimate chemical potentials and hardnesses, is shown to be promising and opens the possibility of rationalizing the behavior of other series of reactions.     

Ã-X absorption of propargyl peroxy radical (H-C≡C-CH2OO·): a cavity ring-down spectroscopic and computational study

The ?-X electronic absorption spectrum of propargyl peroxy radical has been recorded at room temperature by cavity ring-down spectroscopy. Electronic structure calculations predict two isomeric forms, acetylenic and allenic, with two stable conformers for each. The acetylenic trans conformer, with a band origin at 7631.8 ± 0.1 cm(-1), is definitively assigned on the basis of ab initio calculations and rotational simulations, and possible assignments for the acetylenic gauche and allenic trans forms are given. A fourth form, allenic cis, is not observed. Simulations based on calculated torsional potentials predict that the allenic trans form will have a long, poorly resolved progression in the OOCC torsional vibration, consistent with experimental observations.     

Microwave spectrum of C-cyanomethanimine: HCN dimer

The microwave spectra of cis and trans C-cyanomethanimune produced by pyrolysis of dimethylcyanamide were observed. The spectra were assigned with the aid of MO calculations. The rotational constants determined are A = 62550(495), B = 4972.05(8), and C = 4600.33(7) MHz for the cis conformer and A = 54274(366), B = 5073.87(15), and C = 4632.46(13) MHz for the trans conformer.     

Theory of Stereomutation Dynamics and Parity Violation in Hydrogen Thioperoxide Isotopomers 1,2,3HSO1,2,3H

We present quantitative calculations of the mode‐selective stereomutation tunneling and parity violation in chiral hydrogen thioperoxide (‘oxadisulfane') isotopomers XSOY with X, Y=H, D, and T. The torsional tunneling stereomutation dynamics are investigated with a quasi‐adiabatic channel quasi‐harmonic reaction path Hamiltonian approach, which treats the torsional motion anharmonically in detail and all remaining coordinates as harmonic (but anharmonically coupled to the reaction coordinate). We predict how stereomutation is catalyzed or inhibited by excitation of various vibrational modes compared to the corresponding stereomutation dynamics of the vibrational ground state. Parity‐violating potentials were calculated with our recent multiconfiguration linear response (MC‐LR) approach in the random phase approximation (RPA). We find that, in agreement with general scaling expectations, the parity‐violating energy difference for the equilibrium structures of the two HSOH enantiomers (ca. 5×10^?12J mol^?1) is situated intermediate between HOOH and HSSH. Our results on the stereomutation dynamics and the influence of parity violation on these are discussed in relation to investigations for the analogous molecules H₂O₂, H₂S₂, and Cl₂S₂. As expected in XSOY (X, Y=H, D, and T), this influence is much larger than in the corresponding H₂O₂ isotopomers, but smaller than in H₂S₂ or Cl₂S₂.     

Conformational stability from variable temperature infrared spectra of xenon solutions, r0 structural parameters, and ab initio calculations of cyclopropylisocyanate

Infrared spectra (4000 to 400 cm(-1)) of the gas and variable temperature xenon solutions, and the Raman spectrum of the liquid have been recorded for cyclopropylisocyanate. The enthalpy difference has been determined to be 77 ± 8 cm(-1) (0.92 ± 0.10 kJ/mol) with the trans form more stable than the cis conformer with 59 ± 2% present at ambient temperature. By utilizing three rotational constants for each conformer, combined with structural parameters predicted from MP2(full)/6-311+G(d,p) calculations, the adjusted r(0) parameters have been obtained. Heavy atom structural parameters for the trans [cis] conformers are the following: distances (?) (C-C(2,3)) = 1.509(3) [1.509(3)], (C(2)-C(3)) = 1.523(3) [1.521(3)], (C-N) = 1.412(3) [1.411(3)], (N═C) =1.214(3) [1.212(3)], (C═O) = 1.163(3) [1.164(3)]; angles (°) ∠CCN = 116.7(5) [120.1(5)], ∠CNC = 136.3(5) [137.6(5)]. The centrifugal distortion constants have been predicted from ab initio and DFT calculations and are compared to the experimentally determined values.     

Direct calculation of interconversion barriers in dynamic chromatography and electrophoresis: Isomerization of captopril

Dynamic capillary electrophoresis (DCE) and direct calculation of the rate constants of isomerization has been applied to determine the cis-trans isomerization barriers of the angiotensin-converting enzyme inhibitor captopril. The separation of the rotational cis-trans isomeric drug has been performed in an aqueous 50 mM borate buffer at pH 9.3. Interconversion profiles featuring plateau formation, peak-broadening, and peak coalescence were observed. To determine the rate constants of the forward and backward reaction (k(cis-->trans) and k(trans-->cis)) of the isomerization process in dynamic capillary electrophoresis, a novel straightforward calculation method using the experimental parameters plateau height, h(plateau), peak width at half height w(h), the total migration times of the cis-trans isomers t(R) and the electroosmotic break-through time t(0) as well as the peak ratio of the cis-trans isomers is presented for the first time. From temperature dependent measurements the rate constants k(cis-->trans) and k(trans-->cis) and the kinetic activation parameters DeltaG( not equal), DeltaH( not equal), and DeltaS( not equal) of the cis-trans isomerization of captopril were obtained. From the activation parameters the isomerization barriers of captopril at 37 degrees C under basic conditions were calculated to be DeltaG( not equal) (cis-->trans) = 90.3 kJ.mol(-1)and DeltaG( not equal) (trans-->cis) = 90.0 kJ.mol(-1*).     

Transition state infrared spectra for the trans-->cis isomerization of a simple peptide model

Trans-->cis isomerization of N-methylacetylamide (MeCO-NHMe) has been studied at the G3MP2B3 level of theory and the vibration spectrum has been calculated as a function of the torsional mode of motion along the peptide bond. Noticeable spectral differences have been observed for the transition state interconnecting the cis and trans isomers.     

Photoexcited structural dynamics of an azobenzene analog 4-nitro-4'-dimethylamino-azobenzene from femtosecond stimulated Raman

Azobenzenes are used in many applications because of their robust and reversible light induced trans?cis isomerization about the N=N bond, but the mechanism of this ultrafast reaction has not been conclusively defined. Addressing this problem we have used Femtosecond Stimulated Raman Spectroscopy (FSRS) to determine the structural transients in the trans→cis photoisomerization of the azobenzene derivative, 4-nitro-4'-dimethylamino-azobenzene (NDAB). Key marker modes, such as the 1570/1590 cm(-1) NO(2) stretch and the 1630 cm(-1) C-N(Me)(2) stretch, enable the separation and analysis of distinct trans and cis photoproduct dynamics revealing the 400 fs Frank-Condon relaxation, the 800 fs timescale of the cis product formation and the 2 ps emergence and 8 ps relaxation of the unsuccessful ground state trans species. Based on these observations, we propose a reaction mechanism, including initial dilation of the CNN bend later joined by quick movement along the CCNN, CNNC and NNCC torsional coordinates that constitutes a mixed inversion-rotation mechanism.     

Gauche effect in 1,2-difluoroethane. Hyperconjugation, bent bonds, steric repulsion

Natural bond orbital deletion calculations show that whereas the gauche preference arises from vicinal hyperconjugative interaction between anti C-H bonds and C-F* antibonds, the cis C-H/C-F* interactions are substantial (approximately 25% of the anti interaction). The established significantly >60 degrees FCCF dihedral angle for the equilibrium conformer can then be rationalized in terms of the hyperconjugation model alone by taking into account both anti interactions that maximize near 60 degrees and the smaller cis interactions that maximize at a much larger dihedral angle. This explanation does not invoke repulsive forces to rationalize the 72 degrees equilibrium conformer angle. The relative minimum energy for the trans conformer is the consequence of a balance between decreasing hyperconjugative stabilization and decreasing steric destabilization as the FCCF torsional angle approaches 180 degrees . The torsional coordinate is predicted to be strongly contaminated by CCF bending, with the result that approximately half of the trans --> gauche stabilization energy stems from mode coupling.     

Rotational barriers in monomeric CH2=CX-COOH and CH2=CX-CONH2 (X is H or CH3) and vibrational analysis of methacrylic acid and methacrylamide

The internal rotations in acrylic and methacrylic acids CH2=CX-COOH and their amides CH2=CX-CONH2 (X is H or CH3) were investigated by DFT-B3LYP calculations with 6-311+G** basis set. The potential energy curves were consistent with two minima that correspond to planar cis and trans conformation in the case of the acids (or cis and near-trans forms in the case of the amides). Acrylic acid and acrylamide were predicted to have the cis form as the low and predominant conformation of the molecules. In the case of the methacrylic acid and methacrylamide, the conformational relative stability was predicted to reverse as going from the acrylic to the metha compounds. The trans conformer in methacrylic acid or the near-trans in methacrylamide were predicted to be thermodynamically low energy structures of the molecules. The CCCO rotational barrier was calculated to vary from 4 to 6kcal/mol in the four molecules. The OCOH and OCNH torsional barriers were calculated to be about 13 and 22kcal/mol in the acids and the amides, respectively. The vibrational frequencies of methacrylic acid and methacrylamide were computed at the DFT-B3LYP/6-311+G** level and reliable vibrational assignments were made on the basis of normal coordinate analyses and comparison with experimental data of both molecules in their low energy conformations.     

Conformational memory in photodissociation of formic acid

The trans and cis forms of formic acid (HCOOH) in solid argon favor essentially different photodissociation (193 nm) products, H2O + CO and H2 + CO2, respectively. The branching ratio of these channels differs between the two conformers by a factor of >10. The observed selective photodissociation features conformational memory when the transition state of a molecule is reached before torsional randomization. These data demonstrate that the photodissociation products can be efficiently steered with selective narrow-band infrared radiation promoting rotational isomerism, which makes a strong case of optically controlled chemical reactions     

FACILE CHARACTERIZATION OF THE SPECTRA OF cis AND trans PHOTOISOMERS IN A MIXTURE OF ACYL-ENZYMES BY RAMAN DIFFERENCE SPECTROSCOPY

Abstract Raman difference spectroscopy is used to provide the spectra of both the cis and trans forms of acryloyl-based acyl enzymes from a mixture without resorting to purification. A mixture of cis and trans , about the-C=C-C(=O) ethylenic linkage, is generated photochemically and by subtracting the Raman spectrum of the mixture from the spectrum of the pure trans form prior to photochemical irradiation, Raman peaks of the trans acyl-enzyme appear as "negative" features and of the cis form appear as "positive" features. No operator intervention is required to scale the spectra for subtraction, and thus information on the relative Raman scattering efficiencies of the cis and trans isomers can be obtained immediately from the data. Results for 5-methylthienylacryloyl chymotrypsin confirm earlier data for the purified cis and trans forms and data for cis indoleacryloyl chymotrypsin are presented for the first time.     

Ab initio determination of mode coupling in HSSH: the torsional splitting in the first excited S-S stretching state

A mechanism for the enhanced splitting detected in the millimeter-wave rotational spectra of the first excited S-S stretching state of HSSH (disulfane) has been studied. The mechanism, which involves a potential coupling between the first excited S-S stretching state and excited torsional states, has been investigated in part by the use of ab initio theory. Based on an ab initio potential surface, coupling matrix elements have been calculated, and the amount of splitting has then been estimated by second-order perturbation theory. The result, while not in quantitative agreement with the measured splitting, lends plausibility to the assumed mechanism.     

Intramolecular H-Bond Dynamics of Catechol Investigated by THz High-Resolution Spectroscopy of Its Low-Frequency Modes

Catechol is an oxygenated aromatic volatile organic compound and a biogenic precursor of secondary organic aerosols. Monitoring this compound in the gas phase is desirable due to its appreciable reactivity with tropospheric ozone. From a molecular point of view, this molecule is attractive since the two adjacent hydroxy groups can interchangeably act as donor and acceptor in an intramolecular hydrogen bonding due to the tunnelling between two symmetrically equivalent structures. Using synchrotron radiation, we recorded a rotationally-resolved Fourier Transform far-infrared (IR) spectrum of the torsional modes of the free and bonded -OH groups forming the intramolecular hydrogen bond. Additionally, the room temperature, pure rotational spectrum was measured in the 70–220 GHz frequency range using a millimeter-wave spectrometer. The assignment of these molecular transitions was assisted by anharmonic high-level quantum-chemical calculations. In particular, pure rotational lines belonging to the ground and the four lowest energy, vibrationally excited states were assigned. Splitting due to the tunnelling was resolved for the free -OH torsional state. A global fit combining the far-IR and millimeter-wave data provided the spectroscopic parameters of the low-energy far-IR modes, in particular those characterizing the intramolecular hydrogen bond dynamics.     

Gas-phase tautomeric equilibrium of 4-hydroxypyrimidine with its ketonic forms: a free jet millimeterwave spectroscopy study

4-Hydroxypyrimidine (4HP) has two conformational forms (the hydroxyl hydrogen cis or trans with respect to the adjacent nitrogen), which are in tautomeric equilibrium with two ketonic forms, 4-pyrimidinone (4PO) and 6-pyrimidinone (6PO). We have investigated the free jet absorption millimeterwave spectrum of this system, assigning the rotational spectra of 4HPcis and 4PO; the latter species is more stable by 2.0(9) kJ/mol. No lines corresponding to the trans isomer of 4-hydroxypyridine and to 6PO have been observed.     

Rotational spectroscopy and dipole moment of cis-cis HOONO and DOONO

The rotational spectrum of cis-cis HOONO has been studied over a broad range of frequencies, 13-840 GHz, using pulsed beam Fourier-transform microwave spectroscopy and room-temperature flow cell submillimeter spectroscopy. The rotational spectrum of the deuterated isotopomer, cis-cis DOONO, has been studied over a subset of this range, 84-640 GHz. Improved spectroscopic constants have been determined for HOONO, and the DOONO spectrum is analyzed for the first time. Weak-field Stark effect measurements in the region of 84-110 GHz have been employed to determine the molecular dipole moments of cis-cis HOONO [mu(a) = 0.542(8) D, mu(b) = 0.918(15) D, mu = 1.07(2) D] and DOONO [mu(a) = 0.517(9) D, mu(b) = 0.930(15) D, mu = 1.06(2) D]. The quadrupole coupling tensor in the principal inertial axis system for the 14N nucleus has been determined to be chi(aa) = 1.4907(25) MHz, chi(bb) = -4.5990(59) MHz, chi(ab) = 3.17(147) MHz, and chi(cc) = 3.1082(59) MHz. Coordinates of the H atom in the center-of-mass frame have been determined with use of the Kraitchman equations, /aH/ = 0.516 A and /bH/ = 1.171 A. The inertial defects of HOONO and DOONO are consistent with a planar equilibrium structure with significant out-of-plane H atom torsional motion. Comparisons of the present results are made to ab initio calculations.     

1-萘酚的紫外共振双光子电离光谱

利用脉冲分子束技术, 在305-322 nm范围内研究了1-萘酚(1NP)的共振双光子电离(R2PI)光谱. 1NP分子存在cis和trans两种旋转异构体, 但实验中仅观测到trans异构体的电子振动跃迁光谱, 其S1←S0跃迁的(0-0)带头出现在317.90 nm(即31456 cm-1)位置. 利用光谱选律及ab initio和密度泛函(DFT)计算, 对trans异构体在S1态的振动模进行标识, 得出主要对应于对称性为a'的平面内振动模. 计算显示, cis异构体在电子基态S0的能量较trans异构体高出439 cm-1, 而第一激发能却比trans异构体的低1216 cm-1, 与之相应的实验值分别是220和274 cm-1. 计算数值与实验结果在能量变化趋势上完全一致. 共振双光子电离谱中没有观测到cis异构体的光谱信号, 其原因可归结为分子束的有效冷却效应使得处于基态的cis异构体的布居数密度相对trans异构体极低, 导致cis光谱信号太小而未能被探测到.     

Formic and acetic acids in a nitrogen matrix: Enhanced stability of the higher-energy conformer

Formic acid (HCOOH, FA) and acetic acid (CH(3)COOH, AA) are studied in a nitrogen matrix. The infrared (IR) spectra of cis and trans conformers of these carboxylic acids (and also of the HCOOD isotopologue of FA) are reported and analyzed. The higher-energy cis conformer of these molecules is produced by narrowband near-IR excitation of the more stable trans conformer, and the cis-to-trans tunneling decay is evaluated spectroscopically. The tunneling process in both molecules is found to be substantially slower in a nitrogen matrix than in rare-gas matrices, the cis-form decay constants being approximately 55 and 600 times smaller in a nitrogen matrix than in an argon matrix, for FA and AA respectively. The stabilization of the higher-energy cis conformer is discussed in terms of specific interactions with nitrogen molecule binding with the OH group of the carboxylic acid. This model is in agreement with the observed differences in the IR spectra in nitrogen and argon matrices, in particular, the relative frequencies of the νOH and τCOH modes and the relative intensities of the νOH and νC=O bands.     

trans-cis Photoisomerization of the styrylpyridine Ligand in [Re(CO)3(2,2'-bipyridine)(t-4-styrylpyridine)]+: role of the metal-to-ligand charge-transfer excited states

The trans-cis isomerization of the styrylpyridine carbon-carbon double bond induced by visible light irradiation in fac-[Re(CO)(3)(bpy)(stpy)](+) (bpy = 2,2'-bipyridine; stpy = t-4-styrylpyridine) has been investigated by means of quantum-chemical methods. The structures of the various cis and trans conformers of [Re(CO)(3)(bpy)(stpy)](+) have been optimized at the density functional theory (DFT) level. Three rotational conformers for the most stable trans isomer lie within 2.3 kJ mol(-1) each other. The energy difference between the cis and trans isomers is 27.0 kJ mol(-1). The electronic spectroscopy of the most stable conformers has been investigated by time-dependent DFT (TD-DFT) and complete active space self-consistent field/CAS second order perturbation theory (CASSCF/CASPT2) calculations. The lowest absorption bands are dominated by metal-to-ligand charge-transfer (MLCT, d(Re)-->pi*(bpy)) transitions calculated at about 25,000 cm(-1) and by a strong intraligand (1)IL (pi(stpy)-->pi*(stpy)) transition in the near UV region. On the basis of CASSCF potential energy curves (PECs) calculated as a function of the torsion angle of the C=C bond of the styrylpyridine ligand, it is shown that the role of the low-lying MLCT states is important in the photoisomerization mechanism. In contrast to the free organic ligand, in which the singlet mechanism is operational via the (1)IL (S(1)) and electronic ground (S(0)) states, coordination to the rhenium steers the isomerization to the triplet PEC corresponding to the (3)IL state. From the (3)IL(t) (t = trans) the system evolves to the perpendicular intermediate (3)IL(p) (p = perpendicular) following a 90 degrees rotation around the styrylpyridine C=C bond. The metal center acts as a photosensitizer because of the presence of photoactive MLCT states under visible irradiation. The position of the crossing between the (3)IL and electronic ground state PEC determines the quantum yield of the isomerization process.