Near infrared spectroscopic imaging assessment of cartilage composition: Validation with mid infrared imaging spectroscopy

Disease or injury to articular cartilage results in loss of extracellular matrix components which can lead to the development of osteoarthritis (OA). To better understand the process of disease development, there is a need for evaluation of changes in cartilage composition without the requirement of extensive sample preparation. Near infrared (NIR) spectroscopy is a chemical investigative technique based on molecular vibrations that is increasingly used as an assessment tool for studying cartilage composition. However, the assignment of specific molecular vibrations to absorbance bands in the NIR spectrum of cartilage, which arise from overtones and combinations of primary absorbances in the mid infrared (MIR) spectral region, has been challenging. In contrast, MIR spectroscopic assessment of cartilage is well-established, with many studies validating the assignment of specific bands present in MIR spectra to specific molecular vibrations. In the current study, NIR imaging spectroscopic data were obtained for compositional analysis of tissues that served as an in vitro model of OA. MIR spectroscopic data obtained from the identical tissue regions were used as the gold-standard for collagen and proteoglycan (PG) content. MIR spectroscopy in transmittance mode typically requires a much shorter pathlength through the sample (≤10 microns thick) compared to NIR spectroscopy (millimeters). Thus, this study first addressed the linearity of small absorbance bands in the MIR region with increasing tissue thickness, suitable for obtaining a signal in both the MIR and NIR regions. It was found that the linearity of specific, small MIR absorbance bands attributable to the collagen and PG components of cartilage (at 1336 and 856 cm⁻¹, respectively) are maintained through a thickness of 60 μm, which was also suitable for NIR data collection. MIR and NIR spectral data were then collected from 60 μm thick samples of cartilage degraded with chondroitinase ABC as a model of OA. Partial least squares (PLS) regression using NIR spectra as input predicted the MIR-determined compositional parameters of PG/collagen within 6% of actual values. These results indicate that NIR spectral data can be used to assess molecular changes that occur with cartilage degradation, and further, the data provide a foundation for future clinical studies where NIR fiber optic probes can be used to assess the progression of cartilage degradation.     

The Structural and Optical Properties of 1,2,4-Triazolo[4,3-a]pyridine-3-amine

The structural and spectroscopic properties of a new triazolopyridine derivative (1,2,4-triazolo[4,3-a]pyridin-3-amine) are described in this paper. Its FTIR spectrum was recorded in the 100–4000 cm⁻¹ range and its FT-Raman spectrum in the range 80–4000 cm⁻¹. The molecular structure and vibrational spectra were analyzed using the B3LYP/6-311G(2d,2p) approach and the GAUSSIAN 16W program. The assignment of the observed bands to the respective normal modes was proposed on the basis of PED calculations. XRD studies revealed that the studied compound crystallizes in the centrosymmetric monoclinic space group P2₁/n with eight molecules per unit cell. However, the asymmetric unit contains two 1,2,4-triazolo[4,3-a]pyridin-3-amine molecules linked via N–H⋯N hydrogen bonds with a R₂²(8) graph. The stability of the studied molecule was considered using NBO analysis. Electron absorption and the luminescence spectra were measured and discussed in terms of the calculated singlet, triplet, HOMO and LUMO electron energies. The Stokes shifts derived from the optical spectra were equal to 9410 cm⁻¹ for the triazole ring and 7625 cm⁻¹ for the pyridine ring.     

Infrared and near-infrared spectroscopic study of synthetic hydrotalcites with variable divalent/trivalent cationic ratios

Near-infrared (NIR), X-ray diffraction (XRD) and infrared (IR) spectroscopy have been applied to hydrotalcites of the formula Mg₆ (Fe,Al)₂(OH)₁₆(CO₃)·4H₂O formed by intercalation with the carbonate anion as a function of divalent/trivalent cationic ratio. Such hydrotalcites were found to show variation in the d-spacing attributed to the size of the cation. In the IR (1750–4000 cm⁻¹), the position of all bands except those at approximately 3060 cm⁻¹ shift to higher wavenumbers as the cation ratio increases. Conversely, at wavenumbers below 1000 cm⁻¹, the bands shift to lower wavenumbers as the cation ratio increases. A water bending mode at higher wavenumbers was also observed which indicates that the water is strongly hydrogen bonded. In the NIR spectrum between 8000 and 12,000 cm⁻¹, there is a broad feature which is attributed to electronic bands of the ferrous ion and low intensity sharp bands due to overtones of the OH stretching vibrations. It is also apparent from this region that Fe²⁺ substitutes for Mg²⁺. The intensity of bands at 7750 and 5200 cm⁻¹ increases as the cation ratio increases in the NIR spectrum. Hydrotalcites with a magnesium amount 3 and 4 times greater than that of aluminium and iron combined, in the lower wavenumber region of the NIR spectrum, have very similar spectral profiles. This work has shown that hydrotalcites with different divalent/trivalent ratios can be synthesised and characterised by infrared spectroscopy.     

Study on hydration of poly(N-vinylcaprolactam) microgels by near-IR and mid-IR spectroscopy

Hydration of poly(N-vinylcaprolactam) microgels was investigated by near-infrared (NIR) and mid-infrared (MIR) spectroscopy. The thermosensitive microgels were prepared by emulsion polymerization, and turbidity, dynamic light scattering, and differential scanning calorimetry measurements were carried out. In MIR spectra, carbonyl bands consist of three components due to double, single, and zero hydrogen-bonding carbonyl groups as verified by density functional theory calculations. The relative intensities changed critically at the volume phase transition temperature upon heating. In NIR spectra, two absorbance peaks around 5,900?cm^?1 were observed, which can be assigned to the first overtone of C–H bands. Both of them undergo red shifts during the phase transition in a similar way to that of fundamental bands in MIR spectra. The result suggests that NIR spectroscopy may be a new general method that can provide new information for research on hydration of thermosensitive microgels.     

Infrared, optical absorption, and EPR spectroscopic studies on natural gypsum

The natural gypsum has been investigated by infrared, Raman, X-ray diffraction, optical absorption and electron paramagnetic resonance spectroscopy. The fundamental stretching and bending vibrations observed in the infrared region for SO₄²⁻ and H₂O are compared with the near-infrared overtones and combinations of these vibrations. MIR and Raman spectral features are attributed to sulfate fundamentals and lattice vibrations of H₂O, SO₄²⁻. The charge transfer and ligand field transition bands were observed near 490, 630, and 800–900 nm and were compared to those of iron oxides. The optical absorption spectrum indicates the presence of ferric and ferrous ions in the mineral. The site symmetry of Fe(III) in the sample is tetragonally distorted. EPR results indicate the presence of the ferric ion in a tetragonally distorted state.     

Mid-Infrared Spectroscopy as a Rapid Tool to Qualitatively Predict the Effects of Species,Regions and Roasting on the Nutritional Composition of Australian Acacia Seed Species

In recent times, the popularity of adding value to under-utilized legumes have increased to enhance their use for human consumption. Acacia seed (AS) is an underutilized legume with over 40 edible species found in Australia. The study aimed to qualitatively characterize the chemical composition of 14 common edible AS species from 27 regions in Australia using mid-infrared (MIR) spectroscopy as a rapid tool. Raw and roasted (180 °C, 5, 7, and 9 min) AS flour were analysed using MIR spectroscopy. The wavenumbers (1045 cm⁻¹, 1641 cm⁻¹, and 2852–2926 cm⁻¹) in the MIR spectra show the main components in the AS samples. Principal component analysis (PCA) of the MIR data displayed the clustering of samples according to species and roasting treatment. However, regional differences within the same AS species have less of an effect on the components, as shown in the PCA plot. Statistical analysis of absorbance at specific wavenumbers showed that roasting significantly (p < 0.05) reduced the compositions of some of the AS species. The results provided a foundation for hypothesizing the compositional similarity and/or differences among AS species before and after roasting.     

MIR and NIR spectroscopy of sol–gel hydrotalcites with various trivalent cations

Three different hydrotalcites were synthesized from magnesium ethoxide, and aluminium, gallium and indium acetylacetonate, using the sol–gel technique. The colloid suspensions initially obtained were gelled and separated by centrifugation. XRD diffraction patterns confirmed that all solids thus obtained possessed a hydrotalcite structure. The resulting hydrotalcites were characterized by mid-infrared (MIR) and near-infrared (NIR) spectroscopies. The two types of spectra were found not to depend on the synthetic medium or trivalent metal used and were thus quite similar. The MIR spectra for the three solids included a strong band at 3500–3000 cm⁻¹ due to stretching vibrations of the different types of O–H groups in them. The signal at about 1370 cm⁻¹ observed for all solids indicates that the sole interlayer anion present was carbonate. The NIR spectra exhibited the bands for the first and second overtone of the O–H stretching vibration in addition to various combination bands.     

Physicochemical Characterization of the Loganic Acid–IR,Raman, UV-Vis and Luminescence Spectra Analyzed in Terms of Quantum Chemical DFT Approach

The molecular structure and vibrational spectra of loganic acid (LA) were calculated using B3LYP density functional theory, the 6–311G(2d,2p) basis set, and the GAUSSIAN 03W program. The solid-phase FTIR and FT-Raman spectra of LA were recorded in the 100–4000 cm⁻¹ range. The assignment of the observed bands to the respective normal modes was proposed on the basis of the PED approach. The stability of the LA molecule was considered using NBO analysis. The electron absorption and luminescence spectra were measured and discussed in terms of the calculated singlet, triplet, HOMO, and LUMO electron energies. The Stokes shift derived from the optical spectra was 20,915 cm⁻¹.     

Application of UV–Vis,near-infrared and mid-infrared spectroscopy to the study of Mn-bearing humites

The combination of electronic and vibrational spectra has been applied to correlate the spectral properties, with composition, structure and cation substitutions such as Mn, Fe, Ca and Zn for Mg in humites: norbergite, alleghanyite, leucophoenicite and sonolite with increasing number of silicate layers, 1, 2, 3 and 4. The observation of two broad bands in the visible range, near 550 and 450 nm (18 180 and 22 220 cm⁻¹) and one sharp band around 410 nm (24 390 cm⁻¹) is characteristic of Mn²⁺ in alleghanyite and leucophoenicite. The study of UV–Vis (electronic) spectral features confirms Mn as a major substituent in these two samples. Cation impurities like Zn and Ca as revealed from EDX analysis might be the cause for the absence of Mn-type spectrum in sonolite. The first observation is the near-infrared spectra of all four minerals in the first fundamental overtone OH-stretching mode are different and each mineral is characterized by its NIR spectrum. The feature in the range 7180–6600 cm⁻¹ [1393–1515 nm or 1.39–1.52 μm] corresponds to the overtones of OH stretching vibrational modes of the humite groups observed in their IR spectra over the range, 3680–3320 cm⁻¹. The infrared spectra of the hydrous components of OH and SiO₄ groups in the mineral structure act as an aid to distinguish the minerals of the humite mineral group. A band at 541 cm⁻¹ is assigned to MnO stretching mode.     

Vibrational spectra of liquid di-iso-propylether

The spectrum of the complex refractive index in the 15,000-100 cm⁻¹ region was determined for liquid di-iso-propylether from transmission studies. In the MIR region very thin layers with thicknesses of a few micrometers had to be used to obtain reliable data. FT-Raman spectra of the liquid are also reported. Identifications for numerous bands observed in the liquid phase were proposed based on results of a conformational analysis and modeling of vibrational spectra using DFT calculations.     

Benefits of near-infrared spectroscopy for characterization of selected organo-montmorillonites

The potential of near infrared (NIR) spectroscopy in characterization of organically modified clay minerals is introduced. Selected organo-clays, possibly perspective fillers in clay polymer nanocomposites, were prepared from Na-montmorillonite and different surfactants containing octylammonium chain(s), hexadecylammonium chain(s) or a benzene ring with or without a reactive double bond. Based on the stretching (ν) and bending (δ) vibrations observed in the middle IR (MIR) region, the first overtone (2νXH) and combination (ν + δ)XH modes of XH groups (X = O, C, N) are identified. The effect of larger alkylammonium cations on the vibrations of Si-O and OH bonds in montmorillonite layers is observed. The changes in the intensity of the (ν + δ)H₂O band near 5250 cm⁻¹ allows for comparison of the amount of water adsorbed on the montmorillonite surface. The water content decreases with the size of the organic cation reflecting increasing hydrophobicity of the montmorillonite surface. The NIR region shows the 2νCH₃ and 2νCH₂ bands in the 5900-5500 cm⁻¹ region, an upward shift is observed for the complex band due to 2νCH(Ar) of aromatic benzene ring. The NIR spectra are extremely useful in identification of NH₂⁺, NH⁺ and vinyl groups, which are difficult to recognize in the MIR spectra of organo-clays due to overlapping with other absorption bands. The intense bands corresponding to overtones and combination vibrations of NH₃⁺ and NH₂⁺ groups are found in the 6600-6050 cm⁻¹ and 5000-4600 cm⁻¹ regions, the (ν + δ)NH⁺ is unambiguously identified near 4750 cm⁻¹. The characteristic band assigned to 2νCH₂ in H₂CC is detected near 6130 cm⁻¹.     

Application of two‐dimensional near‐infrared (2D‐NIR) correlation spectroscopy to the discrimination of three species of Dendrobium

The objective of this paper was to apply two‐dimensional (2D) near‐infrared (NIR) correlation spectroscopy to the discrimination of three species of Dendrobium. Generalized 2D‐NIR correlation spectroscopy was able to enhance spectral resolution, simplify the spectrum with overlapped bands and provide information about temperature‐induced spectral intensity variations that was hard to obtain from one‐dimensional NIR spectroscopy. The FT‐NIR spectra were measured over a temperature range of 30–140°C. The 2D synchronous and asynchronous spectra showed remarkable differences within the range of 5600–4750 cm⁻¹ between different species of Dendrobium. Copyright © 2009 John Wiley & Sons, Ltd.     

Evaluation and comparison of mid-infrared,Raman and near-infrared spectroscopies for characterization and determination of the compositions in fully biodegradable poly(lactic acid)/poly(propylene carbonate)/poly(butylene adipate-co-terephthalate) blends combined with chemometrics

In this work, mid-infrared (MIR), Raman and near-infrared (NIR) spectroscopies were evaluated and compared for characterization and determination of the compositions in poly(lactic acid)/poly(propylene carbonate)/poly(butylene adipate-co-terephthalate) (PLA/PPC/PBAT) blends via chemometrics. Qualitative analysis of MIR, Raman, and NIR spectra of the three compositions was performed. Partial least squares (PLS) models were developed based on each spectroscopy for quantitative determination of the concentrations. The data suggested that MIR and Raman have an advantage over NIR in terms of qualitative recognition of the three compositions. The data also showed that Raman and NIR succeeded in determining the concentrations, while the concentration determined via MIR was inaccurate. Hence, Raman is the optimal analytical tool for qualitative characterization and quantitative determination of the compositions in fully biodegradable PLA/PPC/PBAT blends. The characteristic bands in the Raman spectra clearly identify PLA, PPC, and PBAT to be 392 cm^?1 (δ CCO), 948 cm^?1 (ν C?O?C) and 1600 cm^?1 (ν C ? C in benzene ring), respectively. The optimal calibration models based on Raman for PLA, PPC, and PBAT exhibited root mean square error of prediction (RMSEP) values of 3.140%, 3.576%, and 2.538%, respectively.     

Using near-infrared overtone regions to determine biodiesel content and adulteration of diesel/biodiesel blends with vegetable oils

This work evaluates the use of near-infrared (NIR) overtone regions to determine biodiesel content, as well potential adulteration with vegetable oil, in diesel/biodiesel blends. For this purpose, NIR spectra (12,000–6300 cm⁻¹) were obtained using three different optical path lengths: 10 mm, 20 mm and 50 mm. Two strategies of regression with variable selection were evaluated: partial least squares (PLS) with significant regression coefficients selected by Jack-Knife algorithm (PLS/JK) and multiple linear regression (MLR) with wavenumber selection by successive projections algorithm (MLR/SPA). For comparison, the results obtained by using PLS full-spectrum models are also presented. In addition, the performance of models using NIR (1.0 mm optical path length, 9000–4000 cm⁻¹) and MIR (UATR – universal attenuated total reflectance, 4000–650 cm⁻¹) spectral regions was also investigated. The results demonstrated the potential of overtone regions with MLR/SPA regression strategy to determine biodiesel content in diesel/biodiesel blends, considering the possible presence of raw oil as a contaminant. This strategy is simple, fast and uses a fewer number of spectral variables. Considering this, the overtone regions can be useful to develop low cost instruments for quality control of diesel/biodiesel blends, considering the lower cost of optical components for this spectral region.     

Infrared optical constants, dielectric constants, molar polarizabilities, transition moments, dipole moment derivatives and Raman spectrum of liquid cyclohexane

Previous studies have been done in this laboratory focusing on the optical properties of several liquid aromatic and aliphatic hydrocarbons in the infrared. The current study reports the infrared and absorption Raman spectra of liquid cyclohexane. Infrared spectra were recorded at 25 °C over a wavenumber range of 7400–490 cm⁻¹. Infrared measurements were taken using transmission cells with pathlengths ranging from 3 to 5000 μm. Raman spectra were recorded between 3700 and 100 cm⁻¹ at 25 °C using a 180° reflection geometry. Ab initio calculations of the vibrational wavenumbers at the B3LYP/6311G level of theory were performed and used to help assign the observed IR and Raman spectra. Extensive assignments of the fundamentals and binary combinations observed in the infrared imaginary molar polarizability spectrum are reported. The imaginary molar polarizability spectrum was curve fitted to separate the intensity from the various transitions and used to determine the transition moments and magnitudes of the derivatives of the dipole moment with respect to the normal coordinates for the fundamentals.     

Gas phase i.r. spectrum and vibro-rotational analysis of CH2BrCl

The gas phase i.r. spectrum of CH₂BrCl with natural isotopic abundance has been measured under medium resolution in the range 4000-350 cm⁻¹. Accurate inspection of the band contours enabled us to positively identify most of the observed absorptions including fundamentals, overtones and combinations. The frequency value of the lowest fundamental ν₆, lying below the spectral range examined, has been evaluated by difference of suitable combinations and “hot” bands. B- and C-type absorptions exhibiting resolved rotational structure have been analyzed in terms of perpendicular bands in the symmetric rotor approximation and molecular parameters have been deduced.     

IR-analysis of H-bonded H2O on the pure TiO2 surface

The surface state of optically pure polydisperse TiO₂ (anatase and rutile) was determined by infra-red (IR) spectroscopy analysis in the temperature range of 100–453 K. Anatase A300 spectrum, contrary to rutile R300 one, has a broad three-component absorption band with peaks at 1048, 1137 and 1222 cm⁻¹ in the spectral range of δ(Ti–O–H) deformation vibrations. For rutile R300 we observed a very weak band at 1047 cm⁻¹, and for the thermal treated rutile R900 these bands were not appeared at all. The analysis of temperature dependencies for the mentioned absorption bands revealed the spectral shift of 1222 cm⁻¹ band towards the high frequencies, when the temperature increased, but the spectral parameters of 1137 and 1048 cm⁻¹ bands remained the same. The temperature of 1222 cm⁻¹ band maximum shift was 373–393 K and correlated with DSC data. Obtained results allowed to assign 1222 cm⁻¹ band to the deformation vibrations of OH-groups, bounded to the surface adsorbed water molecules by weak hydrogen bonds (5 kcal/mol). During the temperature growth these molecules desorbed, which also resulted in the intensity decreasing of stretching OH-groups vibration IR-bands at 3420 cm⁻¹. The destruction and desorption of surface water complexes led to Ti–O–H bond strengthening. IR bands at 1137 and 1048 cm⁻¹ were attributed to the stronger bounded adsorbed water molecules, which are also characterized with stretching OH-groups vibration bands at 3200 cm⁻¹. These surface structure were additionally stabilized by hydrogen bonds with the neighbouring TiO₂ lattice anions and other OH-groups, and desorbed at higher temperatures.     

Optical constants and vibrational assignment of liquid toluene-d8 between 4000 and 450 cm at 25 °C

The optical constants (real and imaginary refractive indices) and imaginary molar polarizability spectrum of liquid toluene-d₈ are presented for the first time. The spectra were determined between 4000 and 450 cm⁻¹ at 25 °C. The fundamentals of toluene-d₈ in the liquid phase are revisited with the aid of gas phase spectra of toluene and toluene-d₈, ab initio calculations, and previously reported liquid assignments of toluene.     

Raman and infrared spectra,conformational stability,barriers to internal rotation,r 0 structural parameters,ab initio calculations,and vibrational assignment for vinyl chloroformate

The Raman (3200 to 10 cm^–1) and infrared (3500 to 50 cm^–1) spectra of vinyl chloroformate, H₂C=CHOC(O)Cl, have been recorded for both the gas and solid. Additionally, the Raman spectrum of the liquid has been recorded, and depolarization ratios have been obtained. These data have been interpreted on the basis that the only stable conformation present at ambient temperature is thetrans-trans rotamer, where the firsttrans refers to the vinyl moiety relative to the O—CCl bond and the second to the C—Cl bond relative to the=C—O bond. Using harmonic rigid asymmetric top calculations, the infrared vapor phase contours for the C=O and the C=C stretch were predicted for thetrans-trans and for thecis-trans conformer, and were compared with experiment. For both fundamentals thetrans-trans hybrid reproduces the experimental contour, whereas thecis-trans contours fail to do so for both fundamentals. From far-infrared spectrum of the vapor obtained at 0.1 cm^–1 resolution, the C(O)Cl andO-vinyl torsional fundamentals have been observed at 132 and 61 cm^–1, respectively. Ther ₀ structural parameters have been obtained from a combination of ab initio calculated parameters with appropriate offset values and the fit of the microwave rotational constants for the two naturally occurring chlorine isotopes. The structure, barrier to internal rotation, and vibrational frequencies have been determined from ab initio Hartree-Fock gradient calculations, using the 3-21G^* and 6-31G^* basis sets. These results are compared to those obtained experimentally and to similar quantities for some related molecules.     

Partial least square analysis of lysozyme near-infrared spectra

Proteins possess strong absorption features in the combination range (5000-4000 cm⁻¹) of the near infrared (NIR) spectrum. These features can be used for quantitative analysis. Partial least squares (PLS) regression was used to analyze NIR spectra of lysozyme with the leave-one-out, full cross-validation method. A strategy for spectral range optimization with cross-validation PLS calibration was presented. A five-factor PLS model based on the spectral range between 4720 and 4540 cm⁻¹ provided the best calibration model for lysozyme in aqueous solutions. For 47 samples ranging from 0.01 to 10 mg/mL, the root mean square error of prediction was 0.076 mg/mL. This result was compared with values reported in the literature for protein measurements by NIR absorption spectroscopy in human serum and animal cell culture supernatants.