6‐Chloroisocytosine and 5‐bromo‐6‐methylisocytosine: again,one or two tautomers present in the same crystal?

It is well known that pyrimidin‐4‐one derivatives are able to adopt either the 1H‐ or the 3H‐tautomeric form in (co)crystals, depending on the coformer. As part of ongoing research to investigate the preferred hydrogen‐bonding patterns of active pharmaceutical ingredients and their model systems, 2‐amino‐6‐chloropyrimidin‐4‐one and 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4‐one have been cocrystallized with several coformers and with each other. Since Cl and Br atoms both have versatile possibilities to interact with the coformers, such as via hydrogen or halogen bonds, their behaviour within the crystal packing was also of interest. The experiments yielded five crystal structures, namely 2‐aminopyridin‐1‐ium 2‐amino‐6‐chloro‐4‐oxo‐4H‐pyrimidin‐3‐ide–2‐amino‐6‐chloropyrimidin‐4(3H)‐one (1/3), C₅H₇N₂⁺·C₄H₃ClN₃O⁻·3C₄H₄ClN₃O, (Ia), 2‐aminopyridin‐1‐ium 2‐amino‐6‐chloro‐4‐oxo‐4H‐pyrimidin‐3‐ide–2‐amino‐6‐chloropyrimidin‐4(3H)‐one–2‐aminopyridine (2/10/1), 2C₅H₇N₂⁺·2C₄H₃ClN₃O⁻·10C₄H₄ClN₃O·C₅H₆N₂, (Ib), the solvent‐free cocrystal 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(3H)‐one–2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(1H)‐one (1/1), C₅H₆BrN₃O·C₅H₆BrN₃O, (II), the solvate 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(3H)‐one–2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(1H)‐one–N‐methylpyrrolidin‐2‐one (1/1/1), C₅H₆BrN₃O·C₅H₆BrN₃O·C₅H₉NO, (III), and the partial cocrystal 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(3H)‐one–2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(1H)‐one–2‐amino‐6‐chloropyrimidin‐4(3H)‐one (0.635/1/0.365), C₅H₆BrN₃O·C₅H₆BrN₃O·C₄H₄ClN₃O, (IV). All five structures show R₂²(8) hydrogen‐bond‐based patterns, either by synthon 2 or by synthon 3, which are related to the Watson–Crick base pairs.     

C?C Cross‐Coupling Reactions of O6‐Alkyl‐2‐Haloinosine Derivatives and a One‐Pot Cross‐Coupling/O6‐Deprotection Procedure

Reaction conditions for the C? C cross‐coupling of O⁶‐alkyl‐2‐bromo‐ and 2‐chloroinosine derivatives with aryl‐, hetaryl‐, and alkylboronic acids were studied. Optimization experiments with silyl‐protected 2‐bromo‐O⁶‐methylinosine led to the identification of [PdCl₂(dcpf)]/K₃PO₄ in 1,4‐dioxane as the best conditions for these reactions (dcpf=1,1′‐bis(dicyclohexylphosphino)ferrocene). Attempted O⁶‐demethylation, as well as the replacement of the C‐6 methoxy group by amines, was unsuccessful, which led to the consideration of Pd‐cleavable groups such that C? C cross‐coupling and O⁶‐deprotection could be accomplished in a single step. Thus, inosine 2‐chloro‐O⁶‐allylinosine was chosen as the substrate and, after re‐evaluation of the cross‐coupling conditions with 2‐chloro‐O⁶‐methylinosine as a model substrate, one‐step C? C cross‐coupling/deprotection reactions were performed with the O⁶‐allyl analogue. These reactions are the first such examples of a one‐pot procedure for the modification and deprotection of purine nucleosides under C? C cross‐coupling conditions.     

HBr or not HBr? That is the question: crystal structure of 6‐hydroxy‐1,4‐diazepane‐1,4‐diium dibromide redetermined

Liu et al. [Chin. J. Struct. Chem. (1996). 15 , 371–373] reported the structure of 6‐hydroxy‐1,4‐diazepane di(hydrogen bromide), C₅H₁₂N₂O·2HBr, which was interpreted in terms of neutral diazepane and HBr molecules. We found, however, ample evidence that the formation of an organic salt, consisting of a diammonium cation and two bromide anions, is more plausible. This interpretation is also in agreement with thermogravimetric analysis and with the observed solution behaviour. The crystal structure of 6‐hydroxy‐1,4‐diazepane‐1,4‐diium dibromide, C₅H₁₄N₂O²⁺·2Br^?, measured at 142 K, crystallized in the orthorhombic space group P2₁2₁2₁. The structure displays O—H…Br and N—H…Br hydrogen bonding. Contact distances are given. A search in the Cambridge Structural Database for the singly‐bonded H—Br moiety revealed a total of 69 structures. The question, whether these structures really include HBr as neutral molecules or rather Br^? anions and a protonated substrate such as an amine, is addressed.     

A Straightforward Synthesis of 2‐[1‐Alkyl‐5,6‐bis(alkoxycarbonyl)‐1,2,3,4‐tetrahydro‐2‐oxopyridin‐3‐yl]acetic Acid Derivatives via Domino Michael Addition?Cyclization Reaction

A new and efficient synthesis of 2‐[1‐alkyl‐5,6‐bis(alkoxycarbonyl)‐1,2,3,4‐tetrahydro‐2‐oxopyridin‐3‐yl]acetic acid derivatives by a one‐pot three‐component reaction between primary amine, dialkyl acetylenedicarboxylate, and itaconic anhydride (=3,4‐dihydro‐3‐methylidenefuran‐2,5‐dione) is reported. The reaction was performed without catalyst and under solvent‐free conditions with excellent yields. Notably, the ready availability of the starting materials, and the high level of practicability of the reaction and workup make this approach an attractive complementary method to access to unknown 2‐[1‐alkyl‐5,6‐bis(alkoxycarbonyl)‐1,2,3,4‐tetrahydro‐2‐oxopyridin‐3‐yl]acetic acid derivatives. The structures were corroborated spectroscopically (IR, ¹H‐ and ¹³C‐NMR, and EI‐MS) and by elemental analyses. A plausible mechanism for this type of domino Michael addition? cyclization reaction is proposed (Scheme 2).     

2‐Halogeno‐1,3,2‐diazaarsolenes and 2‐halogeno‐1,3,2‐diazastibolenes: Examples for spontaneous E?X bond heterolysis or not?

2‐X‐1,3,2‐diazaarsolenes and 2‐X‐1,3,2‐ stibolenes (X = Cl, Br) were prepared from appropriate α‐amino‐aldimine precursors via transamination with ClSb(NMe₂)₂ or via base‐induced dehydrohalogenation with EX₃ (E = As, Sb). The products were further converted into 2‐iodo‐derivatives via halide exchange with Me₃SiI, or into 1,3,2‐diazaarsolenium or 1,3,2‐stibolenium salts via halide abstraction using E′X₃ (E′ = Al, Ga, Sb) or Me₃SiOTf. All compounds synthesized were characterized by spectroscopic data and several of them by single‐crystal X‐ray diffraction studies. The results of these investigations confirmed that diazaarsolenium or stibolenium cations are stabilized by similar π‐delocalization effects as the corresponding diazaphospholenium cations. 2‐Halogeno‐1,3,2‐diazaarsolenes and 2‐halogeno‐132‐stibolenes are best addressed as molecular species whose covalent E X bonds are as in 2‐chloro‐diazaphospholenes weakened by intramolecular π(C₂N₂) → σ*(E X) and, in the case of the Sb‐containing heterocycles, inter‐ molecular n(X′) → σ*(E X) hyperconjugation between the σ* (E X) orbital and a lone‐pair of electrons on the halogen atom of a neighboring molecule. Correlation of structural and spectroscopic data and the evaluation of halide transfer reactions allowed to conclude that the extent of E X bond weakening in the 2‐X‐substituted heterocycles decreases and thus the Lewis acidity of the cations increases, with increasing atomic number of the pnicogen atom. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:327–338, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20098     

C?H/π‐Interaction‐Guided Self‐Assembly in π‐Conjugated Oligomers

We report CH/π hydrogen‐bond‐driven self‐assembly in π‐conjugated skeletons based on oligophenylenevinylenes (OPVs) and trace the origin of interactions at the molecular level by using single‐crystal structures. OPVs were designed with appropriate pendants in the aromatic core and varied by hydrocarbon or fluorocarbon tails along the molecular axis. The roles of aromatic π‐stack, van der Waals forces, fluorophobic effect and CH/π interactions were investigated on the theromotropic liquid crystallinity of OPV molecules. Single‐crystal structures of hydrocarbon OPVs provided direct evidence for the existence of CH/π interactions between the π‐ring (H‐bond acceptor) and alkyl C? H (H‐bond donor). The four important crystallographic parameters, d_c?x=3.79 Å, θ=21.49°, φ=150.25° and d_Hp?x=0.73 Å, matched in accordance with typical CH/π interactions. The CH/π interactions facilitate the close‐packing of mesogens in x–y planes, which were further protruded along the c axis producing a lamellar structure. In the absence of CH/π interactions, van der Waals interactions drove the assembly towards a Schlieren nematic texture. Fluorocarbon OPVs exhibited smectic liquid‐crystalline textures that further underwent Smectic A (SmA) to Smectic C (SmC) phase transitions with shrinkage up to 11 %. The orientation and translational ordering of mesogens in the liquid‐crystalline (LC) phases induced H‐ and J‐type molecular arrangements in fluorocarbon and hydrocarbon OPVs, respectively. Upon photoexcitation, the H‐ and J‐type molecular arrangements were found to emit a blue or yellowish/green colour. Time‐resolved fluorescence decay measurements confirmed longer lifetimes for H‐type smectic OPVs relative to that of loosely packed one‐dimensional nematic hydrocarbon‐tailed OPVs.