Triple points in solutions of polydisperse semiflexible polymers

When a mother solution of semiflexible polymers with differing molecular weights is forced to undergo phase transition, cloud and shadow curves emerge instead of a coexistence curve. For the first time, we calculate the cloud and shadow curves for an isotropic-nematic transition coupled to polydispersity and predict novel triple points. Because of the emergence of new triple points, polydispersity allows the occurrence of anisotropic phases at much lower polymer concentrations than for the monodisperse solutions.     

Free energy of semiflexible polymers and structure of interfaces

The free energy of semiflexible polymers is calculated as a functional of the compositional scalar order parameter and the orientational order parameter of second-rank tensor S_ij on the basis of a microscopic model of wormlike chains with variable segment lengths. We use a density functional theory and a gradient expansion to evaluate the entropic part of the free energy, which is given in a power series of .The interaction term of the free energy is derived with a random phase approximation. For the rigid rod limit, the nematic-isotropic transition point is given by , N and w being the degree of polymerization and the anisotropic interaction parameter, respectively, and the degree of ordering at the transition point is 0.33448. We also find that the contour length of polymer chains becomes larger in a nematic phase than in an isotropic phase. Interface profiles are obtained numerically for some typical cases. In the neighborhood of isotropic-isotropic interfaces, polymer chains tend to align parallel to the interface on the polymer-rich side and perpendicular on the poor side. When an isotropic region and a nematic region coexist, orientational order parallel to the interface is preferred in the nematic region. Received: 28 May 1998 / Revised: 12 August 1998 / Accepted: 8 September 1998     

Constrained minima of nonlocal free energy functionals

We consider variational problems involving nonlocal free energy functionals that arise from Gibbs measures with Kac potentials and are related to the characterization of the optimal (i.e., typical) shape of an interface under given constraints on the magnetization profile.     

Statistical mechanics of semiflexible polymers

We present the statistical-mechanical theory of semiflexible polymers based on the connection between the Kratky-Porod model and the quantum rigid rotator in an external homogeneous field, and treatment of the latter using the quantum mechanical propagator method. The expressions and relations existing for flexible polymers can be generalized to semiflexible ones, if one replaces the Fourier-Laplace transform of the end-to-end polymer distance, 1/(k ²/3 + p), through the matrix , where D and M are related to the spectrum of the quantum rigid rotator, and considers an appropriate matrix element of the expression under consideration. The present work provides also the framework to study polymers in external fields, and problems including the tangents of semiflexible polymers. We study the structure factor of the polymer, the transversal fluctuations of a free end of the polymer with fixed tangent of another end, and the localization of a semiflexible polymer onto an interface. We obtain the partition function of a semiflexible polymer in half space with Dirichlet boundary condition in terms of the end-to-end distribution function of the free semiflexible polymer, study the behaviour of a semiflexible polymer in the vicinity of a surface, and adsorption onto a surface.Received: 23 March 2004, Published online: 23 July 2004PACS: 36.20.-r Macromolecules and polymer molecules - 61.41. + e Polymers, elastomers, and plastics - 82.35.Gh Polymers on surfaces; adhesion     

Relaxation dynamics of semiflexible polymers

We study the relaxation dynamics of a semiflexible chain by introducing a time-dependent tension. The chain has one of its ends attached to a large bead, and the other end is fixed. We focus on the initial relaxation of the chain that is initially strongly stretched. Using a tension that is self-consistently determined, we obtain the evolution of the end-to-end distance with no free parameters. Our results are in good agreement with single molecule experiments on double stranded DNA.     

Stretching dynamics of semiflexible polymers

We analyze the nonequilibrium dynamics of single inextensible semiflexible biopolymers as stretching forces are applied at the ends. Based on different (contradicting) heuristic arguments, various scaling laws have been proposed for the propagation speed of the backbone tension which is induced in response to stretching. Here, we employ a newly developed unified theory to systematically substantiate, restrict, and extend these approaches. Introducing the practically relevant scenario of a chain equilibrated under some prestretching force f _pre that is suddenly exposed to a different external force f _ext at the ends, we give a concise physical explanation of the underlying relaxation processes by means of an intuitive blob picture. We discuss the corresponding intermediate asymptotics, derive results for experimentally relevant observables, and support our conclusions by numerical solutions of the coarse-grained equations of motion for the tension.     

Anisotropic random networks of semiflexible polymers

Motivated by the organization of cross-linked cytoskeletal biopolymers, we present a semimicroscopic replica field theory for the formation of anisotropic random networks of semiflexible polymers. The networks are formed by introducing random permanent cross-links which fix the orientations of the corresponding polymer segments to align with one another. Upon increasing the cross-link density, we obtain a continuous gelation transition from a fluid phase to a gel where a finite fraction of the system gets localized at random positions. For sufficiently stiff polymers, this positional localization is accompanied by a continuous isotropic-to-nematic (IN) transition occurring at the same cross-link density. As the polymer stiffness decreases, the IN transition becomes first order, shifts to a higher cross-link density, and is preceded by an amorphous solid where the average polymer orientations freeze in random directions.     

Stretching of semiflexible polymers with elastic bonds

A semiflexible harmonic chain model with extensible bonds is introduced and applied to the stretching of semiflexible polymers or filaments. The semiflexible harmonic chain model allows to study effects from bending rigidity, bond extension, discrete chain structure, and finite length of a semiflexible polymer in a unified manner. The interplay between bond extension and external force can be described by an effective inextensible chain with increased stretching force, which leads to apparently reduced persistence lengths in force-extension relations. We obtain force-extension relations for strong- and weak-stretching regimes which include the effects of extensible bonds, discrete chain structure, and finite polymer length. We discuss the associated characteristic force scales and calculate the crossover behaviour of the force-extension curves. Strong stretching is governed by the discrete chain structure and the bond extensibility. The linear response for weak stretching depends on the relative size of the contour length and the persistence length which affects the behaviour of very rigid filaments such as F-actin. The results for the force-extension relations are corroborated by transfer matrix and variational calculations.PACS: 87.15.-v Biomolecules: structure and physical properties - 87.15.Aa Theory and modeling; computer simulation - 87.15.La Mechanical properties     

Force-induced desorption and unzipping of semiflexible polymers

The thermally assisted force-induced desorption of semiflexible polymers from an adhesive surface or the unzipping of two bound semiflexible polymers by a localized force are investigated. The phase diagram in the force-temperature plane is calculated both analytically and by Monte Carlo simulations. Force-induced desorption and unzipping of semiflexible polymers are first order phase transitions. A characteristic energy barrier for desorption is predicted, which scales with the square root of the polymer bending rigidity and governs the initial separation process before a plateau of constant separation force is reached. This leads to activated desorption and unzipping kinetics accessible in single molecule experiments.     

Collapse transition of two-dimensional flexible and semiflexible polymers

The nature of the globule-coil transition of surface-confined polymers has been an issue of debate. Here this 2D collapse transition is studied through a partially directed lattice model. In the general case of polymers with positive bending stiffness (Delta>0), the collapse transition is first order; it becomes second order only in the limiting case of zero bending stiffness (Delta triple bond 0). These analytical results are confirmed by Monte Carlo simulations. We also suggest some possible future experiments.     

Activated dynamics of semiflexible polymers on structured substrates

We study the thermally activated motion of semiflexible polymers in double-well potentials using field-theoretic methods. Shape, energy, and effective diffusion constant of kink excitations are calculated, and their dependence on the bending rigidity of the semiflexible polymer is determined. For symmetric potentials, the kink motion is purely diffusive whereas kink motion becomes directed in the presence of a driving force. We determine the average velocity of the semiflexible polymer based on the kink dynamics. The Kramers escape over the potential barriers proceeds by nucleation and diffusive motion of kink-antikink pairs, the relaxation to the straight configuration by annihilation of kink-antikink pairs. We consider both uniform and point-like driving forces. For the case of point-like forces the polymer crosses the potential barrier only if the force exceeds a critical value. Our results apply to the activated motion of biopolymers such as DNA and actin filaments or of synthetic polyelectrolytes on structured substrates.     

Elongation and fluctuations of semiflexible polymers in a nematic solvent

We directly visualize single polymers with persistence lengths l(p), ranging from 0.05 to 16 microm, dissolved in the nematic phase of rodlike fd virus. Polymers with a sufficiently large persistence length undergo a coil-rod transition at the isotropic-nematic transition of the background solvent. We quantitatively analyze the transverse fluctuations of the semiflexible polymers and show that at long wavelengths they are driven by the fluctuating nematic background. We extract the Odijk deflection length and the elastic constant of the background nematic phase from the data.     

On the origin of the heterogeneous orientation dynamics of semiflexible polymers in solutions

Collective rotational motion in nondilute isotropic solutions of semirigid chains is sensitively probed by depolarized light scattering over a broad time range. The bimodal shape and the peculiar dependence of the orientational relaxation function on the scattering angle might arise from the coupling between orientational and shear modes of molecular motion (P.G. de Gennes, Mol. Cryst. Liq. Cryst. 12, 193 (1971)). The dynamic heterogeneity, i.e. the separation of the time scales and the shape of the relaxation functions appears to be system specific.     

Potts model,Dirac propagator,and conformational statistics of semiflexible polymers

A new discretized version of the Dirac propagator ind space and one time dimensions is obtained with the help of the 2d-state, one-dimensional Potts model. The Euclidean version of this propagator describes all conformational properties of semiflexible polymers. It also describes all properties of fully directed self-avoiding walks. The case of semiflexible copolymers composed of a random sequence of fully flexible and semirigid monomer units is also considered. As a by-product, some new results for disordered one-dimensional Ising and Potts models are obtained. In the case of the Potts model the nontrivial extension of the results to higher dimensions is discussed briefly.     

Temperature phase transitions associated with local minima of energy

We develop an alternative version of the theory of contour models adapted to continuous spins located in sites of a ($d⩾2$)-dimensional lattice. The spins interacting via nearest-neighbor ferromagnetic interactions are embedded in a single spin potential $V$ similar to that already introduced by Dobrushin and Shlosman. The potential $V$ has a finite-ordered sequence of local minima and satisfy certain conditions. For all finite-reciprocal temperatures less than one, we prove the Peierls condition and we show that there exists a sequence of first-order phase transition temperature points.     

Effect of different solid matrixes on surface free energy of EGDMA and TRIM polymers

Advancing and receding contact angles of water, formamide, glycerol and diiodometane were measured on the two polymers; EGDMA (dimethacrylate of ethylene glycol) and TRIM (trimethacrylate-1,1,1-trihydroksymethylopropane) which were polymerized next to glass, silanized glass, stainless steel, mica and silicon surfaces as the matrices. Then from the contact angle hystereses (CAH) and van Oss, Good, Chaudhury (LWAB) approaches the apparent surface free energies were evaluated. The measured contact angles not only depend solely on the polymer chemical structure but also, to some extent, on the solid matrix next to whose surface the sample has polymerized. Surface free energy of the polymer samples calculated from the LWAB approach shows that they interact mainly by dispersive forces. The apparent surface free energy of the polymers calculated from the diiodomethane contact angles hysteresis is practically the same irrespective of the kind of the matrix used. Therefore it can be concluded that the observed weak polar interactions in the surface free energy of the samples depend on the polymer surface preparation. The AFM images show that the obtained surfaces are of different roughness. The RMS values of roughness range between 3.7-90.2 nm for EDGMA, and 5.3-124.5 nm for TRIM. However, as reported in literature, rather protrusions bigger than 1 μm may significantly affect the contact angles, especially the receding ones.     

Single flexible and semiflexible polymers at high shear: Non-monotonic and non-universal stretching response

Using Brownian hydrodynamic simulation techniques, we study single polymers in shear. We investigate the effects of hydrodynamic interactions, excluded volume, chain extensibility, chain length and semiflexibility. The well-known stretching behavior with increasing shear rate [(g)\dot] \dot{{\gamma}} is only observed for low shear [(g)\dot] \dot{{\gamma}} < [(g)\dot]^max \dot{{\gamma}}^{{\max}}_{} , where [(g)\dot]^max \dot{{\gamma}}^{{\max}}_{} is the shear rate at maximum polymer extension. For intermediate shear rates [(g)\dot]^max \dot{{\gamma}}^{{\max}}_{} < [(g)\dot] \dot{{\gamma}} < [(g)\dot]^min \dot{{\gamma}}^{{\min}}_{} the radius of gyration decreases with increasing shear with minimum chain extension at [(g)\dot]^min \dot{{\gamma}}^{{\min}}_{} . For even higher shear [(g)\dot]^min \dot{{\gamma}}^{{\min}}_{} < [(g)\dot] \dot{{\gamma}} the chain exhibits again shear stretching. This non-monotonic stretching behavior is obtained in the presence of excluded-volume and hydrodynamic interactions for sufficiently long and inextensible flexible polymers, while it is completely absent for Gaussian extensible chains. We establish the heuristic scaling laws [(g)\dot]^max \dot{{\gamma}}^{{\max}}_{} ∼ N ^-1.4 and [(g)\dot]^min \dot{{\gamma}}^{{\min}}_{} ∼ N ^0.7 as a function of chain length N , which implies that the regime of shear-induced chain compression widens with increasing chain length. These scaling laws also imply that the chain response at high shear rates is not a universal function of the Weissenberg number Wi = [(g)\dot] \dot{{\gamma}} t \tau anymore, where t \tau is the equilibrium relaxation time. For semiflexible polymers a similar non-monotonic stretching response is obtained. By extrapolating the simulation results to lengths corresponding to experimentally studied DNA molecules, we find that the shear rate [(g)\dot]^max \dot{{\gamma}}^{{\max}}_{} to reach the compression regime is experimentally realizable.     

Nodes versus minima in the energy gap of iron pnictide superconductors from field-induced anisotropy

We develop the formalism for computing the oscillations of the specific heat and thermal transport under rotated magnetic field in multiband superconductors with anisotropic gap and apply it to iron-based materials. We show that these oscillations change sign at low temperatures and fields, which strongly influences the experimental conclusions about the gap structure. We find that recent measurements of the specific heat oscillations indicate that the iron-based superconductors possess an anisotropic gap with deep minima or nodes close to the line connecting electron and hole pockets. We predict the behavior of the thermal conductivity that will help distinguish between these cases.