Microhydration of Guanine base pairs

We report spectroscopy of clusters of guanine base pairs with one and two water molecules. We recorded the vibronic spectra of the mass-selected GG(H2O) and GG(H2O)2 clusters using resonant two photon ionization (R2PI) and we used IR-UV double resonance spectroscopy to obtain ground state IR spectra of these clusters. We found that a single water molecule stabilizes one of two structures we had previously found for guanine dimers. Addition of a second water molecule causes no further structural change.     

Microsolvation of F- in water

Microsolvation of F- in water is studied by ionization and double ionization spectra of (H2O)1-3F- calculated by ab initio methods. It is shown that the presence of the fluorine electrons introduces many-body properties in the spectra which cannot be reproduced by the presence of a negative point charge. The increase of the solvation shell increases the complexity in particular of the double ionization spectra. Ionization and double ionization energies slowly increase with continued solvation, and many-body effects in the inner valence spectra become more prominent.     

Flexible H2O2 in water: electronic structure from photoelectron spectroscopy and ab initio calculations

The effect of hydration on the electronic structure of H(2)O(2) is investigated by liquid-jet photoelectron spectroscopy measurements and ab initio calculations. Experimental valence electron binding energies of the H(2)O(2) orbitals in water are, on average, 1.9 eV red-shifted with respect to the gas-phase molecule. A smaller width of the first peak was observed in the photoelectron spectrum from the solution. Our experiment is complemented by simulated photoelectron spectra, calculated at the ab initio level of theory (with EOM-IP-CCSD and DFT methods), and using path-integral sampling of the ground-state density. The observed shift in ionization energy upon solvation is attributed to a combination of nonspecific electrostatic effects (long-range polarization) and of the specific interactions between H(2)O(2) and H(2)O molecules in the first solvation shell. Changes in peak widths are found to result from merging of the two lowest ionized states of H(2)O(2) in water due to conformational changes upon solvation. Hydration effects on H(2)O(2) are stronger than on the H(2)O molecule. In addition to valence spectra, we report oxygen 1s core-level photoelectron spectra from H(2)O(2)(aq), and observed energies and spectral intensities are discussed qualitatively.     

Hydration of gaseous copper dications probed by IR action spectroscopy

Clusters of Cu (2+)(H 2O) n , n = 6-12, formed by electrospray ionization, are investigated using infrared photodissociation spectroscopy, blackbody infrared radiative dissociation (BIRD), and density functional theory of select clusters. At 298 K, the BIRD rate constants increase with increasing cluster size for n >or= 8, but the trend reverses for the smaller clusters where Cu (2+)(H 2O) 6 is less stable than Cu (2+)(H 2O) 8. This trend in stability is consistent with a change in fragmentation pathway from loss of a water molecule for clusters with n >or= 9 to loss of hydrated protonated water clusters and the formation of the corresponding singly charged hydrated metal hydroxide for n 相似文献   

A comparative ab initio study of Br2*- and Br2 water clusters

The work presents ab initio results on structure and electronic properties of Br2*-.nH2O(n=1-10) and Br2.nH2O(n=1-8) hydrated clusters to study the effects of an excess electron on the microhydration of the halide dimer. A nonlocal density functional, namely, Becke's half-and-half hybrid exchange-correlation functional is found to perform well on the present systems with a split valence 6-31++G(d,p) basis function. Geometry optimizations for all the clusters are carried out with several initial guess structures and without imposing any symmetry restriction. Br2*-.nH2O clusters prefer to have symmetrical double hydrogen-bonding structures. Results on Br2.nH2O(n>or=2) cluster show that the O atom of one H2O is oriented towards one Br atom and the H atom of another H2O is directed to other Br atom making Br2 to exist as Br+-Br- entity in the cluster. The binding and solvation energies are calculated for the Br2*-.nH2O and Br2.nH2O clusters. Calculations of the vibrational frequencies show that the formation of Br2*- and Br2 water clusters induces significant shifts from the normal modes of isolated water. Excited-state calculations are carried out on Br2*-.nH2O clusters following configuration interaction with single electron excitation procedure and UV-VIS absorption profiles are simulated. There is an excellent agreement between the present theoretical UV-VIS spectra of Br2*-.10H2O cluster and the reported transient optical spectra for Br2*- in aqueous solution.     

A first principles molecular dynamics study of excess electron and lithium atom solvation in water-ammonia mixed clusters: structural, spectral, and dynamical behaviors of [(H2O)5NH3]- and Li(H2O)5NH3 at finite temperature

First principles molecular dynamics simulations are carried out to investigate the solvation of an excess electron and a lithium atom in mixed water-ammonia cluster (H(2)O)(5)NH(3) at a finite temperature of 150 K. Both [(H(2)O)(5)NH(3)](-) and Li(H(2)O)(5)NH(3) clusters are seen to display substantial hydrogen bond dynamics due to thermal motion leading to many different isomeric structures. Also, the structures of these two clusters are found to be very different from each other and also very different from the corresponding neutral cluster without any excess electron or the metal atom. Spontaneous ionization of Li atom occurs in the case of Li(H(2)O)(5)NH(3). The spatial distribution of the singly occupied molecular orbital shows where and how the excess (or free) electron is primarily localized in these clusters. The populations of single acceptor (A), double acceptor (AA), and free (NIL) type water and ammonia molecules are found to be significantly high. The dangling hydrogens of these type of water or ammonia molecules are found to primarily capture the free electron. It is also found that the free electron binding motifs evolve with time due to thermal fluctuations and the vertical detachment energy of [(H(2)O)(5)NH(3)](-) and vertical ionization energy of Li(H(2)O)(5)NH(3) also change with time along the simulation trajectories. Assignments of the observed peaks in the vibrational power spectra are done and we found a one to one correlation between the time-averaged populations of water and ammonia molecules at different H-bonding sites with the various peaks of power spectra. The frequency-time correlation functions of OH stretch vibrational frequencies of these clusters are also calculated and their decay profiles are analyzed in terms of the dynamics of hydrogen bonded and dangling OH modes. It is found that the hydrogen bond lifetimes in these clusters are almost five to six times longer than that of pure liquid water at room temperature.     

Clusters of hydrated methane sulfonic acid CH3SO3H.(H2O)n (n = 1-5): a theoretical study

Ab initio and density functional methods have been used to examine the structures and energetics of the hydrated clusters of methane sulfonic acid (MSA), CH3SO3H.(H2O)n (n = 1-5). For small clusters with one or two water molecules, the most stable clusters have strong cyclic hydrogen bonds between the proton of OH group in MSA and the water molecules. With three or more water molecules, the proton transfer from MSA to water becomes possible, forming ion-pair structures between CH3SO3- and H3O+ moieties. For MSA.(H2O)3, the energy difference between the most stable ion pair and neutral structures are less than 1 kJ/mol, thus coexistence of neutral and ion-pair isomers are expected. For larger clusters with four and five water molecules, the ion-pair isomers are more stable (>10 kJ/mol) than the neutral ones; thus, proton transfer takes place. The ion-pair clusters can have direct hydrogen bond between CH3SO3- and H3O+ or indirect one through water molecule. For MSA.(H2O)5, the energy difference between ion pairs with direct and indirect hydrogen bonds are less than 1 kJ/mol; namely, the charge separation and acid ionization is energetically possible. The calculated IR spectra of stable isomers of MSA.(H2O)n clusters clearly demonstrate the significant red shift of OH stretching of MSA and hydrogen-bonded OH stretching of water molecules as the size of cluster increases.     

Theoretical investigation of the electronically excited states of chlorine hydrate

As a step toward a first principles characterization of the optical properties of chlorine hydrate, we have calculated the electronic absorption spectrum of a chlorine molecule trapped in dodecahedral (H2O)20 and hexakaidodecahedral (H2O)24 cages. For comparison, spectra were also calculated for an isolated Cl2 molecule as well as for selected Cl2(H2O)n, n < or =8, clusters cut out of the Cl2(H2O)20 cluster, allowing us to follow the evolution of the low-lying excited states with increasing number of surrounding water molecules. Although encapsulation of a chlorine molecule within the water cages has relatively little effect on its low-lying valence transitions, it does result in a large number of solvent-to-solute charge-transfer transitions at energies starting near 48,000 cm(-1).     

The Kohn-Sham density of states and band gap of water: from small clusters to liquid water

Electronic properties of water clusters (H2O)(n), with n=2, 4, 8, 10, 15, 20, and 30 molecules were investigated by sequential Monte Carlo/density-functional theory (DFT) calculations. DFT calculations were carried out over uncorrelated configurations generated by Monte Carlo simulations of liquid water with a reparametrized exchange-correlation functional that reproduces the experimental information on the electronic properties (first ionization energy and highest occupied molecular orbital-lowest unoccupied molecular orbital gap) of the water dimer. The dependence of electronic properties on the cluster size (n) shows that the density of states (DOS) of small water clusters (n>10) exhibits the same basic features that are typical of larger aggregates, such as the mixing of the 3a1 and 1b1 valence bands. When long-ranged polarization effects are taken into account by the introduction of embedding charges, the DOS associated with 3a1 orbitals is significantly enhanced. In agreement with valence-band photoelectron spectra of liquid water, the 1b1, 3a1, and 1b2 electron binding energies in water aggregates are redshifted by approximately 1 eV relative to the isolated molecule. By extrapolating the results for larger clusters the threshold energy for photoelectron emission is 9.6+/-0.15 eV (free clusters) and 10.58+/-0.10 eV (embedded clusters). Our results for the electron affinity (V0=-0.17+/-0.05 eV) and adiabatic band gap (E(G,Ad)=6.83+/-0.05 eV) of liquid water are in excellent agreement with recent information from theoretical and experimental works.     

Electron impact ionization of water-doped superfluid helium nanodroplets: observation of He(H(2)O)(n)(+) clusters

Electron impact mass spectra have been recorded for helium nanodroplets containing water clusters. In addition to identification of both H(+)(H(2)O)(n) and (H(2)O)(n)(+) ions in the gas phase, additional peaks are observed which are assigned to He(H(2)O)(n)(+) clusters for up to n=27. No clusters are detected with more than one helium atom attached. The interpretation of these findings is that quenching of (H(2)O)(n)(+) by the surrounding helium can cool the cluster to the point where not only is fragmentation to H(+)(H(2)O)(m) (where m < or = n-1) avoided, but also, in some cases, a helium atom can remain attached to the cluster ion as it escapes into the gas phase. Ab initio calculations suggest that the first step after ionization is the rapid formation of distinct H(3)O(+) and OH units within the (H(2)O)(n)(+) cluster. To explain the formation and survival of He(H(2)O)(n)(+) clusters through to detection, the H(3)O(+) is assumed to be located at the surface of the cluster with a dangling O-H bond to which a single helium atom can attach via a charge-induced dipole interaction. This study suggests that, like H(+)(H(2)O)(n) ions, the preferential location for the positive charge in large (H(2)O)(n)(+) clusters is on the surface rather than as a solvated ion in the interior of the cluster.     

Theoretical studies on photoelectron and IR spectral properties of Br2.-(H2O)n clusters

We report vertical detachment energy (VDE) and IR spectra of Br2.-.(H2O)n clusters (n=1-8) based on first principles electronic structure calculations. Cluster structures and IR spectra are calculated at Becke's half-and-half hybrid exchange-correlation functional (BHHLYP) with a triple split valence basis function, 6-311++G(d,p). VDE for the hydrated clusters is calculated based on second order Moller-Plesset perturbation (MP2) theory with the same set of basis function. On full geometry optimization, it is observed that conformers having interwater hydrogen bonding among solvent water molecules are more stable than the structures having double or single hydrogen bonded structures between the anionic solute, Br2.-, and solvent water molecules. Moreover, a conformer having cyclic interwater hydrogen bonded network is predicted to be more stable for each size hydrated cluster. It is also noticed that up to four solvent H2O units can reside around the solute in a cyclic interwater hydrogen bonded network. The excess electron in these hydrated clusters is localized over the solute atoms. Weighted average VDE is calculated for each size (n) cluster based on statistical population of the conformers at 150 K. A linear relationship is obtained for VDE versus (n+3)(-1/3) and bulk VDE of Br2.- aqueous solution is calculated as 10.01 eV at MP2 level of theory. BHHLYP density functional is seen to make a systematic overestimation in VDE values by approximately 0.5 eV compared to MP2 data in all the hydrated clusters. It is observed that hydration increases VDE of bromine dimer anion system by approximately 6.4 eV. Calculated IR spectra show that the formation of Br2.--water clusters induces large shifts from the normal O-H stretching bands of isolated water keeping bending modes rather insensitive. Hydrated clusters, Br2.-.(H2O)n, show characteristic sharp features of O-H stretching bands of water in the small size clusters.     

Excess electron and lithium atom solvation in water clusters at finite temperature: an ab initio molecular dynamics study of the structural, spectral, and dynamical behavior of (H2O)6- and Li(H2O)6

The roles of hydrogen bonds in the solvation of an excess electron and a lithium atom in water hexamer cluster at 150 K have been studied by means of ab initio molecular dynamics simulations. It is found that the hydrogen bonded structures of (H(2)O)(6)(-) and Li(H(2)O)(6) clusters are very different from each other and they dynamically evolve from one conformer to other along their simulation trajectories. The populations of the single acceptor, double acceptor, and free type water molecules are found to be significantly high unlike that in pure water clusters. Free hydrogens of these type of water molecules primarily capture the unbound electron density in these clusters. It is found that the binding motifs of the free electron evolve with time and the vertical detachment energy of (H(2)O)(6)(-) and vertical ionization energy of Li(H(2)O)(6) also change with time. Assignments of the observed peaks in vibrational power spectra are done, and we found direct correlations between the time-averaged population of water molecules in different hydrogen bonding states and the spectral features. The dynamical aspects of these clusters have also been studied through calculations of time correlations of instantaneous stretch frequencies of OH modes which are obtained from the simulation trajectories through a time series analysis.     

Loss of chlorine in mass spectra of DCl picked up by water clusters in a beam

Water clusters (H(2)O)(n), n相似文献   

Structure, energy, and IR spectra of I2*-.nH2O clusters (n=1-8): a theoretical study

The authors report theoretical results on structure, bonding, energy, and infrared spectra of iodine dimer radical anion hydrated clusters, I(2) (-).nH(2)O (n=1-8), based on a systematic study following density functional theory. Several initial guess structures are considered for each size cluster to locate minimum energy conformers with a Gaussian 6-311++G(d,p) split valence basis function (triple split valence 6-311 basis set is applied for iodine). It is observed that three different types of hydrogen bonded structures, namely, symmetrical double hydrogen bonding, single hydrogen bonding, and interwater hydrogen bonding structures, are possible in these hydrated clusters. But conformers having interwater hydrogen bonding arrangements are more stable compared to those of double or single hydrogen bonded structures. It is also noticed that up to four solvent H(2)O units can reside around the solute in interwater hydrogen bonding network. At the maximum six H(2)O units are independently linked to the dimer anion having four double hydrogen bonding and two single hydrogen bonding, suggesting the hydration number of I(2) (-) to be 6. However, conformers having H(2)O units independently linked to the iodine dimer anion are not the most stable structures. In all these hydrated clusters, the odd electron is found to be localized over two I atoms and the two atoms are bound by a three-electron hemi bond. The solvation, interaction, and vertical detachment energies are calculated for all I(2) (-).nH(2)O clusters. Energy of interaction and vertical detachment energy profiles show stepwise saturation, indicating geometrical shell closing in the hydrated clusters, but solvation energy profile fails to show such behavior. A linear correlation is observed between the calculated energy of interaction and vertical detachment energy. It is observed that formation of I(2) (-)-water cluster induces significant shifts from the normal O-H stretching modes of isolated H(2)O. However, bending mode of H(2)O remains insensitive to the successive addition of solvent H(2)O units. Weighted average energy profiles and IR spectra are reported for all the hydrated clusters based on the statistical population of individual conformers at room temperature.     

大气环境中的水分子团簇分布和H＋(H2O)n (n＝4～16)离子的解离

报道了用质谱学方法首次测得的大气中各种水的团簇分布情况. 表明在室内大气环境下, 水主要是以几个至几十个水分子所组成的分子团簇的形式存在, 且团簇的分布与空气湿度, 即水在空气中的分压有关. 实验中, 除观测到空气中也存在前人已报道过的具有笼状结构的H＋(H2O)21外, 还观测到其他几种较稳定结构的水的团簇, 即H＋(H2O)4, H＋(H2O)10和H＋(H2O)15. 实验中所测得的水分子团簇分布结果与使用的离子源以及质量分析器种类无关. 我们还用碰撞诱导解离(CID)的方法研究了H＋(H2O)n (n＝4～16)离子的碰撞解离产物, 结果表明, 对于H＋(H2O)n (n＝4～16)的离子, 其较稳定的离子的碰撞解离产物均为H＋(H2O)n (n＝4～6). 我们还进一步研究了H＋(H2O)10离子的碰撞解离产物与碰撞气体(即Ar气)密度的关系, 得到了碰撞气体密度与碰撞解离产物分布的关系.     

Competitive charge- and energy-transfer processes following core ionization in the Na- CO cluster

Anion-molecule clusters constitute a very suitable class of systems for studying intermolecular (interatomic) charge-transfer (CT) processes following core ionization. A weakly bound electron of the anion in these clusters can be easily transferred to the core-ionized molecule. The screening effect of this electron may have a dramatic impact on core-level spectra and even account for a breakdown of the quasiparticle picture of core ionization. This is demonstrated here by calculating the O1s(-1) and C1s(-1) core ionization spectra of the Na- CO cluster using an ab initio fourth-order Green's-function method. Interestingly, along with the CT processes in this cluster there exist also very efficient energy-transfer (ET) processes favored by the low excitation energies of Na-. These ET processes constitute an appreciable part of the electronic excitations following core ionization of Na- CO and exert thereby a strong influence on the spectra studied. The spectral features attributed to the ET processes are as pronounced as those attributed to the CT processes. Major differences in the behavior of CT and ET satellites as a function of the anion-molecule separation are found and explained. We compare also the O1s(-1) core ionization spectra of the Na- CO and Na- H2O clusters. Along with a certain similarity, these spectra exhibit substantial differences which are essentially attributed to the distinct cluster geometries.     

大气环境中的水分子团簇分布和H+(H2O)n(n=4～16)离子的解离

报道了用质谱学方法首次测得的大气中各种水的团簇分布情况.表明在室内大气环境下,水主要是以几个至几十个水分子所组成的分子团簇的形式存在,且团簇的分布与空气湿度,即水在空气中的分压有关.实验中,除观测到空气中也存在前人已报道过的具有笼状结构的H+(H2O)21外,还观测到其他几种较稳定结构的水的团簇,即H+(H2O)4,H+(H2O)10和H+(H2O)15.实验中所测得的水分子团簇分布结果与使用的离子源以及质量分析器种类无关.我们还用碰撞诱导解离(CID)的方法研究了H+(H2O)n(n=4～16)离子的碰撞解离产物,结果表明,对于H+(H2O)n(n=4～16)的离子,其较稳定的离子的碰撞解离产物均为H+(H2O)n(n=4～6).我们还进一步研究了H+(H2O)10离子的碰撞解离产物与碰撞气体(即Ar气)密度的关系,得到了碰撞气体密度与碰撞解离产物分布的关系.     

Strong-field ionization and coulomb explosion of chlorine weakly bound to small water clusters

Clusters exhibit an enhancement in ionization rates under intense, ultrafast laser pulses compared to their molecular/atomic counterparts. Studies of ionization enhancement of weakly bound molecules to clusters have not been previously characterized and quantified. We demonstrate that weakly bound ClO to (H(2)O)(n) (n = 1-12) clusters and weakly bound HCl to (H(2)O)(n) (n = 1-12) clusters produce high atomic charge states of chlorine via Coulomb explosion. Density functional theory (DFT) was used to qualitatively compare the interaction energy of ClO with respect to the number of water molecules as well as HCl with respect to the number of water molecules. The chlorine ion signal intensity for each atomic charge state was observed to be dependent on the molecule-cluster bond strength. The observed ionization enhancement was quantified using semiclassical tunneling theory, and it was found that the Cl(3+-5+) and O(2+) charge states are enhanced in ionization. Possible mechanisms of ionization enhancement are explored for weakly bound chlorine species.     

Vacuum ultraviolet (VUV) photoionization of small water clusters

Tunable vacuum ultraviolet (VUV) photoionization studies of water clusters are performed using 10-14 eV synchrotron radiation and analyzed by reflectron time-of-flight (TOF) mass spectrometry. Photoionization efficiency (PIE) curves for protonated water clusters (H2O)(n)H+ are measured with 50 meV energy resolution. The appearance energies of a series of protonated water clusters are determined from the photoionization threshold for clusters composed of up to 79 molecules. These appearance energies represent an upper limit of the adiabatic ionization energy of the corresponding parent neutral water cluster in the supersonic molecular beam. The experimental results show a sharp drop in the appearance energy for the small neutral water clusters (from 12.62 +/- 0.05 to 10.94 +/- 0.06 eV, for H2O and (H2O)4, respectively), followed by a gradual decrease for clusters up to (H2O)23 converging to a value of 10.6 eV (+/-0.2 eV). The dissociation energy to remove a water molecule from the corresponding neutral water cluster is derived through thermodynamic cycles utilizing the dissociation energies of protonated water clusters reported previously in the literature. The experimental results show a gradual decrease of the dissociation energy for removal of one water molecule for small neutral water clusters (3 相似文献   

Microhydration shell structure in Cl2*-.nH2O clusters: A theoretical study

We present the results of a detailed study on structure and electronic properties of hydrated cluster Cl2*-.nH2O (n = 1-7) based on a nonlocal density functional, namely, Becke's [J. Chem. Phys. 98, 1372 (1993)] half and half hybrid exchange-correlation functional with a split valence 6-311++G(d,p) basis function. Geometry optimizations for all the clusters are carried out with various possible initial guess structures without any symmetry restriction. Several minimum energy structures (conformers) are predicted with a small difference in total energy. There is a competition between the binding of solvent H2O units with Cl2*- dimer radical anion directly through ion-molecule interaction and forming interwater hydrogen-bonding network in Cl2*-.nH2O (n > or = 2) hydrated cluster. Structure having interwater H-bonded network is more stable over the structure where H2O units are connected to the solute dimer radical anion Cl2*- rather independently either by single or double H bonding in a particular size (n) of hydrated cluster Cl2*-.nH2O. At the maximum four solvent H2O units reside in interwater H-bonding network present in these hydrated clusters. It is observed that up to six H2O units are independently linked to the anion having four double H bondings and two single H bondings suggesting the primary hydration number of Cl2*- to be 6. In all these clusters, the odd electron is found to be mostly localized over the two Cl atoms and these two atoms are bound by a three-electron hemibond. Calculated interaction (between solute and different water clusters) and vertical detachment energy profiles show saturation at n = 6 in the hydrated cluster Cl2*-.nH2O (n = 1-7). However, calculated solvation energy increases with the increase in number of solvent H2O molecules in the cluster. Interaction energy varies linearly with vertical detachment energy for the hydrated clusters Cl2*-.nH2O (n < or = 6). Calculation of the vibration frequencies show that the formation of Cl2*(-)-water clusters induces significant shifts from the normal stretching modes of isolated water. A clear difference in the pattern of IR spectra is observed in the O-H stretching region of water from hexa- to heptahydrated cluster.