Esr of pterin and lumazine radicals in solution

Cationic tetrahydrolumazine radicals and cationic tetrahydropterin radicals were detected by electron spin resonance when 5-alkyl-5,6,7,8-tetrahydrolumazines and 5-alkyl-5,6,7,8-tetrahydropterins were oxidized with hydrogen peroxide in formic acid. The hyperfine interactions of both types of radicals are essentially the same.Two consecutive radical species were observed during the oxidation of 3,5,8-trialkyl-5,6,7,8-tetrahydrolumazines in formic acid. They were identified as cationic tetrahydrolumazine radicals and cationic dihydrolumazine radicals.The ESR spectra of neutral trihydro- and monohydro-lumazine radicals, which have not been obtained before, were recorded during the oxidation of 5-alkyl-5,6,7,8-tetrahydrolumazines in chloroform. Starting from 5-butyl-1,3-dimethyl-5,6,7,8-tetrahydrolumazine three different radicals were observed.The spectra were interpreted in terms of hyperfine coupling constants and nuclear spins of the atoms involved.     

EPR study of gamma induced radicals in amino acid powders

To better understand the composite character of amino acids EPR spectra, the radiolysis and reactions which occurred after irradiation of amino acids, a comparative EPR study of a few simple amino acids has been made in order to identify qualitatively and quantitatively the different radiation-induced radicals in amino acid powders. A spin-trapping methodology has been developed and carried out on irradiated glycine, alanine and valine.     

Characterization of cationic diarylethene by electron spin resonance and absorption spectra-ratio of open/closed-ring isomers

Electrochemical cyclization/cycloreversion reactions of a diarylethene, 1,2-bis(3-methyl-2-thienyl)perfluorocyclopentene, are examined experimentally by electron spin resonance (ESR) and absorption spectra. To understand the ESR spectrum, the hyperfine coupling constants are calculated by the density functional theory (DFT) with the B3LYP exchange-correlation functional. The averaged values of the hyperfine coupling constants are approximated by imposing the C(2) symmetry on the structure of the diarylethene. We found that the spectral width of the ESR is significantly different between the open- and closed-ring isomers. This is due to the difference in the pi-conjugation between two isomers. The ESR spectral width analysis could, thus, be used to identify the isomerization of the radical species, which involve the change of the pi-conjugation. The experimentally observed spectrum is found to be the mixture of the open- and closed-ring isomers of the diarylethene. The excitation energies of the cationic diarylethenes are further identified by the SAC-CI calculations.     

Magnetic properties of single crystal alpha-benzoin oxime: An EPR study

The electron paramagnetic resonance (EPR) spectra of gamma irradiated single crystals of alpha-benzoinoxime (ABO) have been examined between 120 and 440 K. Considering the dependence on temperature and the orientation of the spectra of single crystals in the magnetic field, we identified two different radicals formed in irradiated ABO single crystals. To theoretically determine the types of radicals, the most stable structure of ABO was obtained by molecular mechanic and B3LYP/6-31G(d,p) calculations. Four possible radicals were modeled and EPR parameters were calculated for the modeled radicals using the B3LYP method and the TZVP basis set. Calculated values of two modeled radicals were in strong agreement with experimental EPR parameters determined from the spectra. Additional simulated spectra of the modeled radicals, where calculated hyperfine coupling constants were used as starting points for simulations, were well matched with experimental spectra.     

Spectral analysis of 1H coupled 13C spectra of the amino acids: adaptive spectral library of amino acid 13C isotopomers and positional fractional 13C enrichments

The natural abundance 1H-coupled 13C NMR spectra of all proteogenic amino acids were measured in D2O at pH* 1. The accurate 1H,13C spin-spin coupling constants were analyzed using total-line-shape fitting. The obtained spectral parameters can be used to establish a spectral library of amino acid 13C isotopomers. The adaptive spectral library principle is introduced and discussed in this article. The simulated spectra can be applied to quantification of 13C isotopomer mixtures of amino acids and, thus, for exploring metabolic pathways. Also a protocol for amino acid 13C isotopomer metabolomic profiling in 13C labeled glucose feeding experiments is outlined. The approach is suggested to give invaluable information about positional fractional 13C enrichments, which are not easily available by any other method.     

The gas-phase structure of alanine

The jet-cooled rotational spectrum of neutral alanine has been studied using laser-ablation molecular-beam Fourier transform microwave spectroscopy (LA-MB-FTMW). The spectra of the two most stable forms were observed in the frequency range 6-18 GHz for the parent, (15)N alanine, three single (13)C species, and four single D species. The (14)N nuclear quadrupole coupling hyperfine structures have been resolved, and their comparison with those calculated theoretically confirms unambiguously the conformer assignments. The independent structures of both conformers have been determined experimentally for the first time using r(s) and r(0) procedures. In both cases, the amino acid backbone is nonplanar. For the most stable conformer I, the COOH group adopts a cis configuration and an asymmetric bifurcated hydrogen bond is formed between the amino group and carbonyl oxygen (r(N-H(a)...O=C) = 2.70(2) A and r(N-H(b)...O=C) = 2.88(2) A). For conformer IIa, the COOH group adopts a trans configuration and is stabilized by a O-H...N hydrogen bond (r(O-H...N) = 1.96(2) A). The relative conformer abundances in the supersonic expansion have also been investigated.     

Hyperfine resolved spectrum of the bromomethyl radical, CH2Br, by Fourier transform microwave spectroscopy

Pure rotational spectra of the bromomethyl radical, CH(2)Br, were measured by using a Fourier transform microwave (FT-MW) spectrometer in order to fully resolve hyperfine structures arising from both the bromine and hydrogen nuclei. We detected a total of 124 lines for the (79)Br and (81)Br isotopomers, including K(a)=0 (ortho species) and K(a)=1 (para species). No hyperfine splitting due to the hydrogen nuclei was observed for the para species, directly confirming the planarity of the radical. We conducted a global analysis of our present FT-MW results and previous measurements in the millimeter-wave region and obtained an exhaustive list of molecular constants. The sign of the Fermi constant of the bromine nucleus was unambiguously determined to be positive, which is opposite to that found in previous work in the millimeter-wave region and in electron spin resonance experiment on this radical. The present study permitted a systematic comparison to be made of the hyperfine coupling constants of both the halogen and hydrogen nuclei for CH(2)X-type compounds, where X=F, Cl, and Br.     

Endor investigationon Cu2+-doped TGS and DTGS single crystals

Proton ENDOR spectra of the Cu(II)-glycinate chelate in ferroelectric triglycine sulphate single crystals are reported. Magnetic hyperfine coupling constants of the ligand protons of the amino and methylene groups are given and discussed. The ENDOR investigations confirm the correctness of the assumed structure of the copper chelate and show that its point group is only C₁ in the ferroelectric phase of TGS.     

Hydrogen bond geometries from electron paramagnetic resonance and electron-nuclear double resonance parameters: density functional study of quinone radical anion-solvent interactions

Density functional theory was used to study the impact of hydrogen bonding on the p-benzosemiquinone radical anion BQ(*-) in coordination with water or alcohol molecules. After complete geometry optimizations, (1)H, (13)C, and (17)O hyperfine as well as (2)H nuclear quadrupole coupling constants and the g-tensor were computed. The suitability of different model systems with one, two, four, and 20 water molecules was tested; best agreement between theory and experiment could be obtained for the largest model system. Q-band pulse (2)H electron-nuclear double resonance (ENDOR) experiments were performed on BQ(*-) in D(2)O. They compare very well with the spectra simulated by use of the theoretical values from density functional theory. For BQ(*-) in coordination with four water or alcohol molecules, rather similar hydrogen-bond lengths between 1.75 and 1.78 A were calculated. Thus, the computed electron paramagnetic resonance (EPR) parameters are hardly distinguishable for the different solvents, in agreement with experimental findings. Furthermore, the distance dependence of the EPR parameters on the hydrogen-bond length was studied. The nuclear quadrupole and the dipolar hyperfine coupling constants of the bridging hydrogens show the expected dependencies on the H-bond length R(O.H). A correlation was obtained for the g-tensor. It is shown that the point-dipole model is suitable for the estimation of hydrogen-bond lengths from anisotropic hyperfine coupling constants of the bridging (1)H nuclei for H-bond lengths larger than approximately 1.7 A. Furthermore, the estimation of H-bond lengths from (2)H nuclear quadrupole coupling constants of bridging deuterium nuclei by empirical relations is discussed.     

Chiral ferrocene amines derived from amino acids and peptides: synthesis, solution and X-ray crystal structures and electrochemical investigations

For the recognition of all but the simplest naturally occurring molecules, electrochemical sensors based on ferrocene will certainly require chiral centers. To advance the necessary chemistry, this work describes the synthesis and properties of ferrocene derivatives of enantiomerically pure amino acids, peptides, and other chiral amines. Ferrocene aldehyde is condensed with amino acid esters to yield the corresponding Schiff bases 2, which are reduced by NaBH4 in methanol to the ferrocene methyl amino acids 3. An X-ray single-crystal analysis was carried out on the phenylalanine derivative 3a (monoclinic space group P2(1), a = 10.301(1) A, b = 9.647(1) A, c = 18.479(2) A, beta = 102.98(2) degrees, Z = 4). Further peptide chemistry at the C terminus proceeds smoothly as demonstrated by the synthesis of the ferrocene labeled dipeptide Fc-CH2-Phe-Gly-OCH3 5 (Fc = ferrocenyl ((eta-C5H4)Fe(eta-C5H5))). We also report the synthesis of the C,N-bis-ferrocene labeled tripeptide Phe-Ala-Leu and its electrochemical characterization. Starting from the enantiomerically pure ferrocene derivative 9, which was synthesized from ferrocene aldehyde and L-1-amino-ethylbenzene, two diastereomers 10 were obtained by peptide coupling with N-Boc protected D- and L-alanine. There was, however, only very little diastereomeric induction if 0.5 equiv of a racemic mixture of alanine were used. This suggests that amino acid activation rather than coupling is the rate-determining step. A combination of NOESY (nuclear Overhauser effect spectroscopy) spectra and molecular modeling furnished detailed insights into the solution structures of 3, 9, and 10 and was used to rationalize their different reactivity.     

Ab initio study of the ground state properties of molecular oxygen

The electric and magnetic properties of the ground state of oxygen molecule are calculated by multiconfiguration self-consisted field (MCSCF) method and compared with experimental data: the quadrupole moment, polarizability, the 17O nuclear quadrupole coupling constant, magnetizability tensor, nuclear spin-rotation coupling constant and rotational g factor. The last two constants are calculated for all possible isotope modifications. The rotational, ESR and NMR spectra are discussed. Fermi-contact hyperfine coupling parameter is additionally estimated by different methods. The NMR chemical shielding tensor for 17O16O species at high temperature limit (without electron spin contribution) is predicted. Potential energy curves for 10 excited bound states and the internuclear distance dependence of the studied properties are also presented.     

Simplification of complex EPR spectra by cepstral analysis

As the Fourier transform of time-series data is known as the spectrum, the Fourier transform of the logarithm of the time-series data is called the cepstrum of the data. When cepstral analysis is applied to free induction decay signals of free radicals showing first-order EPR spectra, the identification of nuclear hyperfine coupling constants becomes simple. In a systematic manner, we have examined how the technique of cepstral analysis is affected by the presence of aliasing, noise, uncertainty in the time origin of the free induction decay, the presence of second-order hyperfine couplings, and the applications of various apodization methods. This technique was then applied to analyze the EPR spectrum of anthraquinone anion radical, and anion radicals of porphycene and tetrapropyl-porphycene, and the hyperfine coupling constants thus obtained were compared with published data. A good agreement was always found. We make a case for the usefulness of cepstral analysis in determining the hyperfine coupling constants of complex EPR spectra of organic free radicals.     

EPR and DFT study on the stabilization of radiation-generated methyl radicals in dehydrated Na-A zeolite

Electron paramagnetic resonance (EPR) spectroscopy was applied to study paramagnetic species stabilized in Na-A zeolite exposed to gaseous methane and gamma-irradiated at 77 K. Two types of EPR spectra were recorded during thermal annealing of zeolite up to room temperature. Owing to the results for the zeolite exposed to (13)CH(4) the multiplet observed at 110 K was assigned to a (.-)CH(3)...Na(+) complex. After decay of the multiplet, the isotropic quartet of methyl radical was recorded in the temperature range of 170-280 K. On the basis of the EPR parameters it is postulated that (.-)CH(3) radicals in this temperature region are able to freely rotate inside the zeolite cage. The structures of the (.-)CH(3)...Na(+) adsorption complex and respective hyperfine coupling constants were calculated by applying DFT quantum chemical methods. Two different models were applied to represent the zeolite framework: the 6T structure of one six-membered ring and the 3T cluster. The hyperfine coupling constants calculated for the (.-)CH(3)...Na(+) adsorption complex for both applied models show very good agreement with those obtained experimentally.     

Theoretical studies of alkyl radicals in the NaY and HY zeolites

Interplay of quantum mechanical calculations and experimental data on hyperfine coupling constants of ethyl radical in zeolites at several temperatures was engaged to study the geometries and binding energies and to predict the temperature dependence of hyperfine splitting of a series of alkyl radicals in zeolites for the first time. The main focus is on the hyperfine interaction of alkyl radicals in the NaY and HY zeolites. The hyperfine splitting for neutral free radicals and free radical cations is predicted for different zeolite environments. This information can be used to establish the nature of the muoniated alkyl radicals in the NaY and HY zeolites via muSR experiments. The muon hyperfine coupling constants of the ethane radical cation in these zeolites are very large with relatively little dependence on temperature. It was found that the intramolecular dynamics of alkyl free radicals are only weakly affected by their strong binding to zeolites. In contrast, the substrate binding has a significant effect on their intermolecular dynamics.     

Radiation-induced defects in sucrose single crystals, revisited: a combined electron magnetic resonance and density functional theory study

The results are presented of an electron magnetic resonance analysis at 110 K of radiation-induced defects in sucrose single crystals X-irradiated at room temperature, yielding a total of nine (1)H hyperfine coupling tensors assigned to three different radical species. Comparisons are made with results previously reported in the literature. By means of electron paramagnetic resonance and electron nuclear double resonance temperature variation scans, most of the discrepancies between the present 110 K study and a previous 295 K study by Sagstuen and co-workers are shown to originate from the temperature dependence of proton relaxation times and hyperfine coupling constants. Finally, radical models previously suggested in the literature are convincingly refuted by means of quantum chemical density functional theory calculations.     

Hyperfine coupling constants of the azafullerenes C19N, C59N, C69N, and C75N

The isomers of the nitrogen-substituted fullerenes (azafullerenes) C19N, C59N, C69N, and C75N are examined using all-electron Gaussian atomic orbital basis density functional theory, to determine the doublet radical geometries and hyperfine coupling constants. We find that the inaccuracy of previously calculated hyperfine coupling constants of C59N resulted from a poor treatment of the geometry optimization. We find that UB3LYP minimization of the radical geometry in the 6-31G basis, followed by single-point evaluation of the hyperfine constants in which an expanded basis is used on the atomic sites of interest, forms an efficient compromise between computational cost and accuracy with respect to experimental hyperfine constants. Using this approach, we assign the hyperfine signals observed in experiments on the C69N radical by calculating the hyperfine coupling constants for all five of the isomers and examine the electron spin density distribution. Finally, we present predicted hyperfine coupling constants for the isomers of C19N and C75N for use in the interpretation of future experiments.     

ESR of cationic isoalloxazine free radicals

The ESR spectra in solution of a number of cationic isoalloxazine free radicals were recorded and interpreted in terms of hyperfine coupling constants. Two previously published interpretations are shown to be incorrect.     

Density functional theory study of the beta-carotene radical cation and deprotonated radicals

The beta-carotene radical cation and deprotonated neutral radicals were studied at the density functional theory (DFT) level using different density functionals and basis sets: B3LYP/3-21G, SVWN5/6-31G*, BPW91/DGDZVP2, and B3LYP/6-31G**. The geometries, total energies, spin distributions, and isotropic and anisotropic hyperfine coupling constants of these species were calculated. Deprotonation of the methyl group at the double bond of the cyclohexene ring of the carotenoid radical cation at 5 or 5' produces the most stable neutral radical because of retention of the pi-conjugated system while less stable deprotonation at 9 or 9' and 13 or 13' of the chain methyl groups causes significant distortion of the conjugation. The predicted methyl hyperfine coupling constants of 13-16 MHz of the neutral radicals are in good agreement with the previous electron nuclear double resonance (ENDOR) spectrum of photolyzed beta-carotene on a solid support. DFT calculations on the beta-carotene radical cation in a polar water environment showed that the polar environment does not cause significant changes in the proton hyperfine constants from those in the isolated gas-phase molecule. DFT calculated methyl proton hyperfine coupling constants of less than 7.2 MHz are in agreement with those reported for the radical cation in photosystem II (PS II) and those found in the absence of UV light for the radical cation on a silica alumina matrix.     

Electron paramagnetic resonance spectrum of the FCO2 radical isolated in noble gas matrices

The EPR spectra of the fluoroformyloxyl radical FCO(2) isolated in noble gas matrices at temperatures from 5 to 30 K have been investigated. This study provides principal g values and (19)F hyperfine coupling constants of FCO(2) measured in Ar matrices at 5 K, and yields isotropic values at 30 K. A detailed analysis of the coupling parameters obtained from the EPR and a concomitant high resolution spectroscopic MMW study supported by quantum chemical calculations rationalized the fine and hyperfine interactions of this simple fluorooxyl radical.     

Positional and angular dependence of hyperfine interactions in cyclic and bicyclic iminoxy radicals with CO or CH2 group – DFT and EPR studies

UB1LYP method was used to study the geometries together with hyperfine coupling constants (hfccs) and natural atomic occupancies (NAO) for the cyclic (cyclohexanone-type) and bicyclic (camphor-type) iminoxy radicals. The positional and angular dependence of the hyperfine interactions, affected by radical substituents and conformations, was analyzed in terms of different mechanisms of spin density transmission. The calculations predicted a significant distortion of regular conformations and change of hyperfine couplings upon introduction of CO into cyclohexane iminoxyl and the CNO spin label into a boat cyclohexane. Hyperfine splittings of the EPR spectra were compared with the computed hfccs to verify their assignment.