Liquid chromatographic determination of 6-thiopurine metabolites formed in vitro in electrochemical and enzymatic oxidative activation

A micellar liquid chromatographic method is described which was developed for the separation of the oxidation metabolites of 6-thiopurine formed in vitro by electrochemical and enzymatic activation. Electrochemical activation was carried out with an electrochemical cell on-line with the chromatograph. In the potential range 0.4–0.8 V vs. Pd, intermediate purine-6-sulfenic acid could be detected together with purine-6-sulfinic acid and 6-thiopurine disulfide. At potentials > 0.8 V, purine-6-sulfonic acid was detected and the oxidation of 6-thiopurine was completed. Intermediates and products formed in the horseradish peroxidase-catalyzed oxidation of 6-thiopurine were also studied. Enzymatic activation with horseradish peroxidase was similar to electrochemical oxidation at <0.8 V. Detection of sulfenic acid in the enzymatic oxidation supports earlier results which indicated that this metabolite may have biological significance. The results also provide some insight into the enzymatic oxidation pathway.     

The mechanism of enzymatic and biomimetic oxidations of aromatic sulfides and sulfoxides

Biomimetic and enzymatic oxidations of benzyl sulfides and sulfoxides lead to products (sulfoxides or sulfones) different from those obtained with bona fide electron transfer oxidations (products of C---H and/or C---S bond cleavage), which suggests the operation of an oxygen transfer mechanism.     

An electrochemical study of enzymatic oligonucleotide digestion

This paper describes the synthesis and application of a novel ferrocene (Fc) label that can be efficiently attached to oligonucleotides. We demonstrate how pulse electrochemical methods can be used to measure very low concentrations of ferrocene label and, importantly, show good electroanalytical discrimination between a labelled oligonucleotide and an enzyme digested labelled oligonucleotide, in which the ferrocene label nucleotide conjugate has been released. Real time in situ analysis gives a much greater understanding of the process. Potential applications include the detection of specific nucleic acid sequences and measurement of nuclease activity.     

In-line determination of metabolites and milk components with electrochemical biosensors

Electrochemical biosensors for lactate, pyruvate and β-hydroxybutyrate based on oxygen, hydrogen peroxide, and NADH sensors coupled with oxidase and dehydrogenase enzymes were developed and used in conjunction with an artificial pancreas in experiments with extracorporeal circulation. Such procedures allow the fate of these species involved in glucose metabolism to be clarified during insulin treatment of diabetic patients. Studies with a glucose oxidase electrode for in-line determination of glucose produced by hydrolysis of cellobiose in a bioreactor are reported; for the determination of glucose in the presence of high concentrations of cellobiose, the purity of glucose oxidase is important in obtaining linear calibration plots. Impurities like amylase, maltase, invertase, and galactose oxidase, which are usually present in commercial preparations of glucose oxidase, must be absent. Another application is the amperometric determination of lactose, lactate and glucose in milk samples by using a hydrogen peroxide sensor coupled with β-galactosidase, lactate oxidase and glucose oxidase. The procedures outlined are simple and the short response times enable milk to be monitored during processing.     

Theoretical study of molecular interaction between tirapazamine enzymatic catalysis metabolites and water

The weakly hydrogen‐bonded complexes, between tirapazamine enzymatic catalysis metabolites and water, have been investigated by density functional theory (DFT), using the B3LYP hybrid functional. The geometries of these complexes have been fully optimized at the B3LYP/6‐31G(d) and B3LYP/6‐311+G(d) levels. The stabilization energies and charge changes of some atoms have been calculated and analyzed. The results indicate that the catalysis metabolites and water can form stable hydrogen‐bonded complexes. Nine complexes are identified. It is important and necessary to add zero‐point vibrational energy (ZPVE) and basis set superposition error (BSSE) corrections for calculating stabilization energy. The results also reveal an important relationship between the relative stabilities of hydrogen‐bonded complexes and the final products of tirapazamine medication. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Generation of EMF in the rotating electrochemical cell

Based on the literature data and calculated results, the emf, which is generated in the rotating electrochemical cell with the electrodes located at different distances from the rotation axis, is estimated in the cases that the system is or is not placed in the magnetic field. These data enable one to determine the conditions (the angular cell rotational rate, the magnetic induction, etc.), under which the required emf can be obtained without an external power source. The application of magnetic field enables one increase the emf from several mV to several volts.     

The electrochemical evaluation of antipsychotic drug (promethazine) in biological and environmental samples through samarium cobalt oxide nanoparticles

In this work, we developed a perovskite structured samarium cobalt oxide nanoparticles (SmCoO₃ NPs) with the aid of the co-precipitation method. The rare earth metal (Sm) and cobalt oxide combined to form a perovskite lattice structure. One-pot route synthesized SmCoO₃ NPs were scrutinized successfully through various physicochemical techniques. Concerning its effective thermal stability and electrical properties, the synthesized SmCoO₃ NPs have been effectively implemented in the electrochemical evaluation of promethazine hydrochloride (PHY) using cyclic voltammetry. The electrochemical detection of PHY was performed through SmCoO₃ NPs-modified glassy carbon electrode (GCE) and unmodified GCE. The electron transfer kinetics, effect of scan rate, the influence of pH, electroactive surface area, selectivity, and sensitivity have been studied. The electron charge transfer rate (R_ct) and electrolyte resistance (R_s) were calculated to be 105.59 (Ω) and 150 (Ω) in the ferricyanide probe, indicating great facilitation of the electron transfer between PHY and SmCoO₃ NPs deposited on the electrode surface. Further, the optimized SmCoO₃-modified GCE exemplifies excellent selectivity, storage stability, reproducibility, repeatability, detection limit (5 nM), sensitivity (0.594 μA μM^?1 cm^?2), and wide consecutive linear ranges, respectively. Besides, the proposed method has been effectively employed for the detection of PHY in the various real samples which reveals good recoveries of 95.40–99.17%.     

Generation of carbohydrate-deficient transferrin by enzymatic deglycosylation of human transferrin

Carbohydrate-deficient transferrin (CDT) molecules are transferrin isoforms that lack one or both of the carbohydrate groups attached to a normal human transferrin molecule. CDT has been reported to be a sensitive and specific marker for diagnosing alcoholism. This report demonstrates the in vitro generation of CDT molecules that can potentially be used as the standard in measuring CDT concentrations. This was achieved by deglycosylation of human transferrin with the enzyme Endo-β-N-acetylglucosaminidase F₂ (Endo-F₂). The enzyme was immobilized on sepharose beads, which were packed into a column. The immobilization of the enzyme not only eliminated the Endo-F₂ contamination of CDT, but also rendered the enzyme suitable for repetitive use. In this manner, it was possible to obtain at least 200 mg of CDT over a period of more than 3 mo, without any noticeable decrease of enzyme activity, using only 3.0 μg of enzyme. This proved to be an efficient method for generating CDT.     

Prediction of drug metabolites using neural machine translation

Metabolic processes in the human body can alter the structure of a drug affecting its efficacy and safety. As a result, the investigation of the metabolic fate of a candidate drug is an essential part of drug design studies. Computational approaches have been developed for the prediction of possible drug metabolites in an effort to assist the traditional and resource-demanding experimental route. Current methodologies are based upon metabolic transformation rules, which are tied to specific enzyme families and therefore lack generalization, and additionally may involve manual work from experts limiting scalability. We present a rule-free, end-to-end learning-based method for predicting possible human metabolites of small molecules including drugs. The metabolite prediction task is approached as a sequence translation problem with chemical compounds represented using the SMILES notation. We perform transfer learning on a deep learning transformer model for sequence translation, originally trained on chemical reaction data, to predict the outcome of human metabolic reactions. We further build an ensemble model to account for multiple and diverse metabolites. Extensive evaluation reveals that the proposed method generalizes well to different enzyme families, as it can correctly predict metabolites through phase I and phase II drug metabolism as well as other enzymes. Compared to existing rule-based approaches, our method has equivalent performance on the major enzyme families while it additionally finds metabolites through less common enzymes. Our results indicate that the proposed approach can provide a comprehensive study of drug metabolism that does not restrict to the major enzyme families and does not require the extraction of transformation rules.

The structure of the drug, represented with a SMILES sequence, is being translated into the structures of possible metabolites that can be formed in the human body.     

Ion-pair chromatography of acidic drug metabolites and endogenic compounds.

Liquid-liquid chromatographic systems based on ion-pair partition with silica microparticles as the support for the stationary phase have been used for the separation of anionic compounds of biochemical and pharmacological interest. A high separating efficiency can be obtained with both aqueous and organic mobile phases and the retention is easily regulated by the nature and the concentration of the quaternary ammonium counter ion, present in the aqueous phase. The influence of the composition of the liquid phases on the selectivity and separating efficiency has been studied, as well as equilibration methods and the stability of the systems. Examples are given of separations of sulphonamides, barbiturates, glucuronic and sulphuric acid conjugates of steroidal compounds and phenols glycine conjugates of carboxylic acids (hippuric, nicotinuric and salicyluric acid) and anionic metabolites of biogenic amines (indoleacetic, benzoic, mandelic and phenylacetic acid derivatives).     

Rapid and efficient glycoprotein identification through microwave-assisted enzymatic digestion

Identification of protein glycosylation sites is analytically challenging due to the diverse glycan structures associated with a glycoprotein. Mass spectrometry (MS)-based identification and characterization of glycoproteins has been achieved predominantly with the bottom-up approach, which typically involves the enzymatic cleavage of proteins to peptides prior to LC/MS or LC/MS/MS analysis. However, the process can be challenging due to the structural variations and steric hindrance imposed by the attached glycans. Alternatives to conventional heating protocols, that increase the rate of enzymatic cleavage of glycoproteins, may aid in addressing these challenges. An enzymatic digestion of a glycoprotein can be accelerated and made more efficient through microwave-assisted digestion. In this paper, a systematic study was conducted to explore the efficiency of microwave-assisted enzymatic (trypsin) digestion (MAED) of glycoproteins as compared with the conventional method. In addition, the optimum experimental parameters for the digestion such as temperature, reaction time, and microwave radiation power were investigated. It was determined that efficient tryptic digestion of glycoproteins was attained in 15 min, allowing comparable if not better sequence coverage through LC/MS/MS analysis. Optimum tryptic cleavage was achieved at 45°C irrespective of the size and complexity of the glycoprotein. Moreover, MAED allowed the detection and identification of more peptides and subsequently higher sequence coverage for all model glycoprotein. MAED also did not appear to prompt a loss or partial cleavage of the glycan moieties attached to the peptide backbones.     

Applications of electrochemical sensors: Forensic drug analysis

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抗菌素痢菌净的电化学分析

采用循环伏安法(CV)、差分脉冲伏安法(DPV)和方波伏安法(SWV)在玻碳电极(GCE)上对痢菌净进行了电化学研究.实验表明:在pH=6.6的B-R缓冲底液中,痢菌净在-0.85伏左右有一个明显的可逆氧化还原峰,考察了不同底液及pH值、扫描速度、富集时间和静止时间的影响.DPV法其线性范围为2.0×10-6mol/L～2.0×10-3mol/L,检出限为5.0×10-8 mol/L;SWV法其线性范围为2.0×10-6 mol/L～1.0×10-3 mol/L,检出限为2.0×10-8 mol/L.并对痢菌净的电极反应机理进行了初步探讨,该方法操作简单、灵敏,可用于实际药品测定.     

Determination of hydralazine and metabolites in urine by liquid chromatography with electrochemical detection

The cyclic voltammetric behavior of hydralazine and its primary metabolites, the pyruvate and acetone hydrazones, was examined in the positive potential range at both conventional and electrochemically pretreated glassy carbon electrodes. The enhanced oxidations observed at the treated surface were used as the basis of amperometric electrochemical detection of the compounds following reversed-phase liquid chromatography. The detection limits so obtained at +0.75 V vs. Ag/AgCl (1, 3, and 5 ng injected, respectively) were comparable to those previously reported for absorption and fluorescence detection approaches employing derivatization/preconcentration procedures. For liquid chromatography with electrochemical detection, however, direct quantitation of all three species in urine samples was readily accomplished without any chemical derivatization or sample treatment operations other than particulate filtration.     

Potential of HILIC-MS in quantitative bioanalysis of drugs and drug metabolites

One fundamental requirement for many lead optimization processes is the need for bioanalytical support within pharmaceutical drug discovery and development. Currently, most bioanalytical methods for pharmaceutical analysis employ HPLC coupled with MS/MS. The combination of HPLC and MS/MS detection frequently offers the complete resolution of the dosed compounds from their metabolites and the endogenous interferences to avoid extra efforts for chemical separation and sample clean-up procedures resulting in higher-throughput assays for a series of new chemical entities (NCEs). Hydrophilic interaction chromatography (HILIC) has been demonstrated to be a powerful technique for the retention of polar analytes offering a difference in selectivity compared to traditional RP chromatography. This review summarizes the HILIC-MS/MS methods for the trace quantitative determinations of the drug compounds and their metabolites to support both in vitro and in vivo experiments. The challenges on performing HILIC-MS/MS assays such as matrix ionization suppression and the potential for endogenous interferences are also presented.     

Generation and detection of single metal nanoparticles using scanning electrochemical microscopy techniques

Different pathways towards the generation and detection of a single metal nanoparticle (MNP) on a conductive carbon support for testing as an electrocatalyst are described. Various approaches were investigated including interparticle distance enhancement, electrochemical and mechanical tip-substrate MNP transfer onto macroscopic surfaces, scanning electrochemical microscopy (SECM)-controlled electrodeposition, and the use of selective binding monolayers on carbon fiber electrodes (CFEs) for solution-phase-selective adsorption. A novel SECM technique for electrodepositing MNPs on CFE tips immersed 100-200 nm below the electrolyte level was developed and used to generate single Pt and Ni nanoparticles. Following their generation, we demonstrate electrocatalytic detection of Fe3+ on individual Pt particles with the CFE in a Fe3+/H2SO4 solution. We also describe an approach of attaching MNPs to CFEs by controlling the composition of monolayers bonded to the CFE. By employing a monolayer with a low ratio of binding (e.g., 4-aminopyridine) to nonbinding molecules (e.g., aniline) and controlling the position of the CFE in a colloidal Pt solution with a SECM, we attached a single 15 nm radius Pt nanoparticle to the CFE. Such chemisorbed Pt particles exhibited a stronger adhesion on surface-modified CFEs and better mechanical stability during proton reduction than MNPs electrodeposited directly on the CFE.