Single-molecule conductance of redox molecules in electrochemical scanning tunneling microscopy

Experimental data and theoretical notions are presented for 6-[1'-(6-mercapto-hexyl)-[4,4']bipyridinium]-hexane-1-thiol iodide (6V6) "wired" between a gold electrode surface and tip in an in situ scanning tunneling microscopy configuration. The viologen group can be used to "gate" charge transport across the molecular bridge through control of the electrochemical potential and consequently the redox state of the viologen moiety. This gating is theoretically considered within the framework of superexchange and coherent two-step notions for charge transport. It is shown here that the absence of a maximum in the Itunneling versus electrode potential relationship can be fitted by a "soft" gating concept. This arises from large configurational fluctuations of the molecular bridge linked to the gold contacts by flexible chains. This view is incorporated in a formalism that is well-suited for data analysis and reproduces in all important respects the 6V6 data for physically sound values of the appropriate parameters. This study demonstrates that fluctuations of isolated configurationally "soft" molecules can dominate charge transport patterns and that theoretical frameworks for compact monolayers may not be directly applied under such circumstances.     

From Au to Pt via surface limited redox replacement of Pb UPD in one-cell configuration

This work is aimed at developing a protocol based on surface limited redox replacement (SLRR) of underpotentially deposited (UPD) Pb layers for the growth of epitaxial and continuous Pt thin films on polycrystalline and single crystalline Au surfaces. Different from previously reported papers using SLRR in multiple immersion or flow cell setups, this work explores the one-cell configuration setup as an alternative to improve the efficiency and quality of the growth. Open circuit chronopotentiometry and quartz-crystal microbalance experiments demonstrate steady displacement kinetics and a yield that is higher than the stoichiometric Pt(II)-Pb exchange ratio (1:1). This high yield is attributed to oxidative adsorption of OH(ad) taking place on Pt along with the displacement process. Also, ex situ scanning tunneling microscopy surface characterization reveals after the first replacement event the formation of a dense Pt cluster network that homogenously covers the Au surface. The Pt films grow homogenously with no significant changes in the cluster distribution and surface roughness observed up to 10 successive replacement events. X-ray diffraction analysis shows distinct (111) crystallographic orientation of thicker Pt films deposited on (111) textured Au thin films. Coarse energy dispersive spectroscopy measurements and finer X-ray photoelectron spectroscopy suggest at least 4 atom % Pb incorporating into the Pt layer compared to 13 atom % alloyed Cu when the growth is carried out by SLRR of Cu UPD.     

Nanoscale characterization of redox and acid properties of keggin-type heteropolyacids by scanning tunneling microscopy and tunneling spectroscopy: effect of heteroatom substitution

Nanoscale characterization of acid and redox properties of Keggin-type heteropolyacids (HPAs) with different heteroatoms, H(n)MW(12)O(40) (M = P, Si, B, Co), was carried out by scanning tunneling microscopy (STM) and tunneling spectroscopy (TS) in this study. HPA samples were deposited on highly oriented pyrolytic graphite surfaces to obtain images and tunneling spectra by STM before and after pyridine adsorption. All HPA samples formed well-ordered 2-dimensional arrays on graphite before and after pyridine exposure. NDR (negative differential resistance) peaks were observed in the tunneling spectra. Those measured for fresh HPA samples appeared at less negative voltages with increasing reduction potential of the HPAs and with increases in the electronegativity of the heteroatom, but with decreases in the overall negative charge of the heteropolyanions. These results support the conclusion that more reducible HPA samples show NDR behavior at less negative applied voltages in their tunneling spectra. Introduction of pyridine into the HPA arrays increased the lattice constants of the 2-dimensional HPA arrays by ca. 6 A. Exposure to pyridine also shifted NDR peak voltages of H(n)MW(12)O(40) (M = P, Si, B, Co) samples to less negative values in the TS measurements. The NDR shifts of HPAs obtained before and after pyridine adsorption were correlated with the acid strengths of the HPAs, suggesting that tunneling spectra measured by STM could serve to probe acid properties of HPAs. These results show how one can relate the bulk acid and redox properties of HPAs to surface properties of nanostructured HPA monolayers determined by STM.     

Spectroscopic scanning tunneling microscopy studies of single surface-supported free-base corroles

Corroles are versatile chemically active agents in solution. Expanding their applications toward surface-supported systems requires a fundamental knowledge of corrole-surface interactions. We employed the tip of a low-temperature scanning tunneling microscope as local probe to investigate at the single-molecule level the electronic and geometric properties of surface-supported free-base corrole molecules. To provide a suitable reference for other corrole-based systems on surfaces, we chose the archetypal 5,10,15-tris(pentafluorophenyl)corrole [H(3)(TpFPC)] as model system, weakly adsorbed on two surfaces with different interaction strengths. We demonstrate the nondissociative adsorption of H(3)(TpFPC) on pristine Au(111) and on an intermediate organic layer that provides sufficient electronic decoupling to investigate geometric and frontier orbital electronic properties of almost undisturbed H(3)(TpFPC) molecules at the submolecular level. We identify a deviating adsorption behavior of H(3)(TpFPC) compared to structurally similar porphyrins, characterized by a chiral pair of molecule-substrate configurations.     

Solvent effects on two-dimensional molecular self-assemblies investigated by using scanning tunneling microscopy

Self-assembly structures investigated by using scanning tunneling microscopy (STM) at liquid/solid interface have been a topic of broad interest in surface science, molecular materials, molecular electronics. The delicate balance among the adsorbate–solvent, adsorbate–adsorbate, solvent–solvent interactions would give rise to the coadsorption or competitive deposition of solvent with adsorbate. The solvents at the interface enable dynamic absorption and desorption of the adsorbates leading to the controlled assembly of the molecular architectures. The solvent-induced polymorphism, coadsorption effect, as well as solvent effects on chirality and electronic structures are discussed in this report in view of the polarity, solubility and viscosity of the solvent, the hydrogen bonding formation between solute and solvent, and the solvophobic and solvophilic effects. The systematic studies on the solvent effects would shed light on better control of assembly structures for design of new molecular materials and molecular electronics.     

Observation of single dinuclear metal-complex molecules using scanning tunneling microscopy

We report a scanning tunneling microscopy (STM) investigation of a dinuclear organometallic molecule, trans-[Cl(dppe)2Ru(C[triple bond]C)6Ru(dppe)2Cl] (Ru2), absorbed on a Au(111) surface; this molecule is a potential candidate for use in molecular quantum-dot cellular automata (QCA) devices. Isolated Ru2 molecules were observed under ultra-high-vacuum conditions. Submolecular structure was clearly discernible in the STM images, with a bright feature corresponding to each of the two Ru-ligand complexes within the Ru2 molecule. Rotation and translation of the Ru2 molecules were observed to be induced by the STM tip under some tunneling conditions.     

A study of localised galvanic replacement of copper and silver films with gold using scanning electrochemical microscopy

Galvanic replacement represents a highly significant process for the fabrication of bimetallic materials, but to date its application has been limited to either modification of large area metal surfaces or nanoparticles in solution. Here, the localised surface modification of copper and silver substrates with gold through the galvanic replacement process is reported. This was achieved by generation of a localised flux of AuCl₄^? ions from a gold ultramicroelectrode tip which interacts with the unbiased substrate of interest. The extent of modification with gold can be controlled through the tip–substrate distance and electrolysis time.     

Construction of tunable supramolecular networks studied by scanning tunneling microscopy

In this review we describe a family of organic-based host frameworks which can accommodate guest molecules. The aim of the study is to test the adjustability of this class of mimic structures that may lead to new interesting functions. Emphasis of our research is placed upon four aspects: 1) thermal properties, 2) surface photochemistry, 3) fullerene adsorption, and 4) guest inclusion. It is envisioned that such approach of nanoporous molecular networks might be developed into a new family of useful soft fr...     

Identification of single-strand DNA by in situ scanning tunneling microscopy

We report here in situ scanning tunneling microscopy imaging of hexaammineruthenium (II)/(III) (RuHex) binding to single-strand DNA oligonucleotide with 13 bases immobilized in a mixed monolayer on a single-crystal Au(111) surface. RuHex does not bind to the other component in the monolayer, mercaptohexanol. Images before and after addition of RuHex show a strong contrast increase, suggesting that single-stranded DNA is, indeed, conducting when a redox group is bound to the strand. When compared with previous results, the data also suggest that the mechanism of domain formation of the immobilized DNA is independent of the sequence.     

Visualization of atomic processes on ruthenium dioxide using scanning tunneling microscopy.

The visualization of surface reactions on the atomic scale provides direct insight into the microscopic reaction steps taking place in a catalytic reaction at a (model) catalyst's surface. Employing the technique of scanning tunneling microscopy (STM), we investigated the CO oxidation reaction over the RuO2(110) and RuO2(100) surfaces. For both surfaces the protruding bridging O atoms are imaged in STM as bright features. The reaction mechanism is identical on both orientations of RuO2. CO molecules adsorb on the undercoordinated surface Ru atoms from where they recombine with undercoordinated O atoms to form CO2 at the oxide surface. In contrast to the RuO2(110) surface, the RuO2(100) surface stabilizes also a catalytically inactive c(2 x 2) surface phase onto which CO is not able to adsorb above 100 K. We argue that this inactive RuO2(100)-c(2 x 2) phase may play an important role in the deactivation of RuO2 catalysts in the electrochemical Cl2 evolution and other heterogeneous reactions.     

Direct observation and control of hydrogen-bond dynamics using low-temperature scanning tunneling microscopy

Hydrogen(H)-bond dynamics are involved in many elementary processes in chemistry and biology. Because of its fundamental importance, a variety of experimental and theoretical approaches have been employed to study the dynamics in gas, liquid, solid phases, and their interfaces. This review describes the recent progress of direct observation and control of H-bond dynamics in several model systems on a metal surface by using low-temperature scanning tunneling microscopy (STM). General aspects of H-bond dynamics and the experimental methods are briefly described in chapter 1 and 2. In the subsequent four chapters, I present direct observation of an H-bond exchange reaction within a single water dimer (chapter 3), a symmetric H bond (chapter 4) and H-atom relay reactions (chapter 5) within water–hydroxyl complexes, and an intramolecular H-atom transfer reaction (tautomerization) within a single porphycene molecule (chapter 6). These results provide novel microscopic insights into H-bond dynamics at the single-molecule level, and highlight significant impact on the process from quantum effects, namely tunneling and zero-point vibration, resulting from the small mass of H atom. Additionally, local environmental effect on H-bond dynamics is also examined by using atom/molecule manipulation with the STM.     

Inelastic tunneling spectroscopy using scanning tunneling microscopy on trans-2-butene molecule: spectroscopy and mapping of vibrational feature

Inelastic tunneling spectroscopy (IETS) measurement using scanning tunneling microscopy (STM) with a commercially available STM set up is presented. The STM-IETS spectrum measured on an isolated trans-2-butene molecule on the Pd(110) shows a clear vibrational feature in d2I/dV2 at the bias voltage of 360 mV and -363 mV, which corresponds to the nu(C-H) mode (d2I/dV2 approximately 10 nA/V2). In addition, we have obtained an image by mapping the vibrational feature of nu(C-H) in d2I/dV2. The image is obtained by scanning the tip on the surface with the feedback loop activated while the modulation voltage is superimposed on the sample voltage. With the method that is readily performable with conventional software, we have clearly differentiated the molecules of trans-2-butene and butadiene through the mapping of the vibrational feature, demonstrating its capability of chemical identification in atomic scale.     

Surface microstructure of carbon black: Advances in characterization by scanning tunneling microscopy

The recent advances in the characterization of the surface structure of carbon black by scanning tunneling microscopy (STM) are reported. The atomic organization, at the surfaces of several carbon blacks, is well resolved by STM and a local paracrystalline structure model is proposed, where the distorted carbon layer and thus the unequal inter-layer distance are evidenced on the basis of the classical turbostratic stacking. The quantitative analysis of the STM image, which enables a quantitative assessment of the surface crystallinity and of the nanoscale roughness, is presented.     

Observation of nanoparticles and film formation by scanning tunneling microscopy: methyl methacrylate/butyl methacrylate nanoparticles prepared by microemulsion polymerization

 Latexes as dispersions of poly(methyl methacrylate-co-butyl methacrylate) copolymeric nanoparticles within water were produced by microemulsion polymerization of the respective comonomers. Polymer yield, number-average and weight-average molecular weights, polydispersity index, and the glass-transition temperature of the copolymer produced were 50%, 8.8 × 10⁴, 2.54 × 10⁵, 2.87, and 45 °C. Scanning tunneling microscopy (STM) images of the latex nanoparticles and film formation on highly oriented pyrolitic graphite (HOPG) were obtained with a 2 V sample bias and a tunneling current of 20 pA. The STM pictures revealed that the particle size was 18 ± 3 nm. There was no film formation in the case of dehydration at room temperature. There was some coalesence of particles when the HOPG surface was preheated at 55 °C, while complete film formation was achieved when the latexes were annealed at 55 °C in an oven for about 10 min. Received: 23 August 1999 Accepted: 17 January 2000     

Physical structure of standing-up aromatic SAMs revealed by scanning tunneling microscopy

Long-range-ordered aromatic SAMs are formed on Au(111) using 4-nitrophenyl sulfenyl chloride as a precursor. Although the main structure is a √3 × √3 with a molecular density similar to that usually found for aliphatic SAMs, particular spots presenting specific shapes are also observed by STM. These include hexagons, partial hexagons, parallelograms, and zigzags resulting from specific arrangements of adsorbed molecules. These molecular arrangements are reversible as they form and dissociate or "vanish" in various areas on the surface. STM shows that these particular structures provide some order to their surrounding because areas void of these structures look less ordered. More interestingly, STM shows submolecular details of the molecules involved in forming these structures, hence providing direct experimental evidence for the ability of the STM to provide physical structure information of standing up SAMs. This is indeed a heavily debated question, and this work reports the first experimental example where submolecular physical structure is revealed by STM for standing-up SAMs.     

Determination of relative binding affinities of labeling molecules with amino acids by using scanning tunneling microscopy

The binding behaviour of labeling molecule copper phthalocyanine tetrasulfonate sodium (PcCu(SO(3)Na)(4)) on the assemblies of representative polyamino acids has been studied by using scanning tunneling microscopy (STM). By directly visualizing the adsorption and distribution of the labeling species on the peptide assemblies in STM images, one could obtain relative binding affinities of the labeling molecule with different amino acid residues.     

Selective internal manipulation of a single molecule by scanning tunneling microscopy

We have studied the adsorption of the polyaromatic molecule 1,4"-paratriphenyldimethylacetone, which we have nicknamed Trima. The originality of this linear molecule is that it was designed and synthesized to have two functionalities. First, chemisorb itself to the surface by its two ends rather like a bridge. Second, the central part of the molecule could then be rotated by injecting electrons with the tip of the scanning tunneling microscope (STM). The length of the molecule corresponds exactly to the spacing between five dimers in a row on the Si(100)-2 x 1 surface. We found that the molecule adsorbs as expected on the clean silicon surface by using complementary STM and synchrotron radiation studies. Manipulation of individual molecules with the STM tip showed selective internal modifications that were highly voltage dependent. These manipulations were found to be compatible with an electronic excitation of the pi-pi* transition of the molecule.     

Single-electron charging features of larger, dodecanethiol-protected gold nanoclusters: electrochemical and scanning tunneling microscopy studies

In this report, we demonstrate the single-electron charging features of larger-sized (ca. 3.72 nm) Au nanoclusters protected with dodecanethiol [approximate composition, Au1415(RS)328] using combined electrochemical and scanning tunneling microscopic (STM) studies. In particular, these nanoclusters show a highly populated single-electron charging peak in voltammetric experiments, where the calculated capacitance is in good agreement with the experimentally obtained value of 1.6 aF. In comparison to the voltammetric studies, STM measurements over a single Au particle on the highly oriented pyrolytic graphite surface reveal nonlinear current-voltage (I-V) characteristics with a large central gap, signifying single-electron-transfer features. The I-V results demonstrate a clear Coulomb blockade effect with a central gap of around 0.2 eV, which is in good agreement with the orthodox theory for the double barrier tunnel junction system. The standard heterogeneous electron-transfer rate constant estimated from impedance measurements is found to be of 7.97 x 10(-6) cm.s(-1), suggesting that the process is very sluggish. Furthermore, diffusion coefficient (Dc) values calculated from chronoamperometry and impedance measurements are in good agreement with theoretically calculated values using the modified Stokes-Einstein equation. The electron-transfer rate constant estimated from cyclic voltammograms of adsorbed monolayer protected Au nanoclusters is found to be about 2 s(-1), which is slower than that reported for its smaller analogues.