The first example of the alkoxy-containing iron(ii) tris-dioximate clathrochelate: synthesis, structure, and properties

Abatract  The reaction of the dichloride iron(ii) tris-dioximate clathrochelate with triethyl orthoformate in the presence of metallic sodium afforded the diethoxy-substituted macrobicyclic complex. The first alkoxy-containing clathrochelate was characterized using elemental analysis, MALDI-TOF mass spectrometry, IR, UV-Vis, ¹H and ¹³C{¹H} NMR spectroscopy, and X-ray diffraction analysis. Dedicated to the 90th anniversary of the L. Ya. Karpov Institute of Physical Chemistry. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1283–1288, June, 2008.     

Synthesis and structure of the first ribbed-functionalized quinoxaline clathrochelate: design of cage complexes for efficient intercalation into DNA structure

Condensation of the dichloride clathrochelate FeBd₂(Cl₂Gm)(BF)₂ precursor (Bd^2– is the -benzyl dioxime dianion, Gm is the glyoxime residue) with quinoxaline-2,3-dithiol in the presence of triethylamine afforded the ribbed-functionalized quinoxaline clathrochelate. The structure of this complex was established by X-ray diffraction analysis.     

Reactivity of iron(II) dichloride clathrochelate: Synthesis and properties of mono-and disubstituted amino clathrochelates

Iron(II) monochloromonoamino, monochloromonodimethylamino, and (amino)dimethylamino clathrochelates, viz., derivatives of the dichloride bis-α-benzyldioximate precursor, were synthesized and characterized by X-ray diffraction analysis. The dimethylamine substituents in the α-dioximate fragments of the clathrochelate ligands have flattened geometry due to conjugation in the amidoxime fragments. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1910–1915, November, 2006.     

Supramolecular organization of light-harvesting porphyrin macrorings

Porphyrin‐based supramolecular nanostructures have been produced by the self‐assembly of porphyrin macrorings with three benzoic acid groups (Acid‐R) on each side of the rings through cooperative carboxyl–carboxyl hydrogen bonds. Structures of the organized Acid‐R were analyzed by AFM, and two clear distribution peaks were observed at 3 and 27 nm in the height‐distribution histogram. From the overall assessment, the higher objects are considered to be one‐dimensional structures standing vertically on the mica substrate. The height corresponds to an 11‐mer of a unit Acid‐R. Light‐harvesting functions were examined by using fluorescence titration, whereby an energy‐acceptor molecule (Tripod 2 ) was employed that strongly interacted with Acid‐R units (association constant: 2.0×10⁸ M ^?1), specifically from the inner pore. The titration results showed that the apparent stoichiometry [Tripod 2 ]/[Acid‐R] was <0.5, and that the value was concentration dependent. Titration results reasonably account for the scheme in which Tripod 2 only interacts with each terminal in the organized Acid‐R. The number of organization was fitted to a 10‐mer of Acid‐R in a 6.8×10^?7 M solution, and was consistent with that estimated from the AFM results. In the composites of organized Acid‐R/Tripod 2 , a singlet excitation energy transfer occurred among the Acid‐R units, and to Tripod 2 . The energy‐transfer rate constants were estimated by using the decamer model, which employed kinetic parameters obtained from steady‐state and time‐resolved fluorescence experiments.     

Ribbed-functionalized iron(ii) tris-dioximate clathrochelates with pendant fragments of various types: synthetic pathways,structures, and properties

Nucleophilic substitution of chlorine atoms in the iron(ii) hexachloride clathrochelate on treatment with thiolate anions afforded hexafunctionalized tris-dioximate complexes with the pendant n-butyl-, n-octylsulfide, silatrane, and captopryl functionalizing groups. These complexes were characterized by elemental analysis, IR, UV-Vis, ¹H and ¹³C NMR, and ⁵⁷Fe Mössbauer spectroscopies, and plasma-desorption mass spectrometry. The crystal and molecular structures of the n-butylsulfide and silatrane clathrochelates were established by X-ray diffraction analysis. Cyclic voltammetry study demonstrated that the Fe²⁺/Fe³⁺ redox process of the encapsulated iron ion is responsible for the electrochemical behavior of the prepared compounds in solution.     

Potentially hexadentate bisazine dioximate ligands: “correct” synthetic procedure and encapsulation reactions of the iron(ii) ion

Condensation of diacetyl monoxime hydrazone with diacetyl, hexane-3,4-dione, and glyoxal in MeOH afforded potentially hexadentate bisazine dioximes. The crystal and molecular structure of the condensation product with diacetyl was established by X-ray diffraction analysis. The reactions of the resulting azine oximes with Fe²⁺ ions in the presence of Lewis acids were studied.     

Synthesis and structure of the ferrocenylboron-capped clathrochelate iron(ii) oximehydrazonates

The direct template macrocyclization of 2,3-butanedione monooxime hydrazone (HDXO) with ferrocenylboronic acid on the iron(ii) ion matrix afforded the ferrocenylboron-capped semiclathrochelate iron(ii) oximehydrazonate. The H⁺ ion-catalyzed macrocyclization of this precursor with an excess of triethyl orthoformate gave the clathrochelate complex with syn,syn,syn-orientation of the ethoxy substituents relative to the 1,3,5-triazacyclohexane ring. The complexes synthesized were characterized using elemental analysis, IR and UV—Vis spectroscopies, MALDI-TOF mass spectrometry, ¹H and ¹³C{¹H} NMR, ⁵⁷Fe Mössbauer spectroscopies, and X-ray diffraction analysis.     

Supramolecular Protein Immobilization on Lipid Bilayers

Protein immobilization on surfaces, and on lipid bilayers specifically, has great potential in biomolecular and biotechnological research. Of current special interest is the immobilization of proteins using supramolecular noncovalent interactions. This allows for a reversible immobilization and obviates the use of harsh ligation conditions that could denature fragile proteins. In the work presented here, reversible supramolecular immobilization of proteins on lipid bilayer surfaces was achieved by using the host–guest interaction of the macrocyclic molecule cucurbit[8]uril. A fluorescent protein was successfully immobilized on the lipid bilayer by making use of the property of cucurbit[8]uril to host together a methylviologen and the indole of a tryptophan positioned on the N‐terminal of the protein. The supramolecular complex was anchored to the bilayer through a cholesterol moiety that was attached to the methylviologen tethered with a small polyethylene glycol spacer. Protein immobilization studies using a quartz crystal microbalance (QCM) showed the assembly of the supramolecular complexes on the bilayer. Specific immobilization through the protein N‐terminus is more efficient than through protein side‐chain events. Reversible surface release of the proteins could be achieved by washing with cucurbit[8]uril or buffer alone. The described system shows the potential of supramolecular assembly of proteins and provides a method for site‐specific protein immobilization under mild conditions in a reversible manner.     

Supramolecular assemblies of sulfonatocalixarenes with phenanthroline: factors governing capsule formation versus bilayer arrangements

Four crystalline complexes were prepared by the inclusion complexation of the 1,10-phenanthrolinium ion (Phen) with p-sulfonatothiacalix[4]arene (TCAS) (2 from a solution at pH 1-2 and 4 from 1 M HCl) and with p-sulfonatocalix[5]arene (C5AS) (3 from a solution at pH 1-2 and 5 from 1 M HCl) upon varying the acidity of the solution. By combining the results obtained for complexes 2-5 with those for our previously reported complex (1), p-sulfonatocalix[4]arene (C4AS) complexed to Phen, it was revealed that p-sulfonatocalixarenes (CASs) form "bis-molecular" capsules (1, 2, and 3) around Phen at pH 1-2, whereas complexes 4 and 5 display distinct host-guest inclusion behavior at higher acid concentrations. The degree of compactness of the capsules increases with the enlargement of the calixarene cavity, which is affected significantly by both the penetration depth of Phen and the structure of the Phen dimer. Furthermore, the complexation behavior of TCAS/C5AS with Phen in 1 M DCl was investigated by using NMR spectroscopy, and was discussed in comparison with the previously reported results obtained from solutions at pH 2.0.     

New Perspectives for Old Clusters: Anderson–Evans Anions as Building Blocks of Large Polyoxometalate Frameworks in a Series of Heterometallic 3 d–4 f Species

A series of nine [Sb₇W₃₆O₁₃₃Ln₃M₂(OAc)(H₂O)₈]^17? heterometallic anions ( Ln₃M₂ ; Ln=La–Gd, M=Co; Ln=Ce, M=Ni and Zn) have been obtained by reacting 3 d metal disubstituted Krebs‐type tungstoantimonates(III) with early lanthanides. Their unique tetrameric structure contains a novel {MW₉O₃₃} capping unit formed by a planar {MW₆O₂₄} fragment to which three {WO₂} groups are condensed to form a tungstate skeleton identical to that of a hypothetical trilacunary derivative of the ?‐Keggin cluster. It is shown, for the first time, that classical Anderson–Evans {MW₆O₂₄} anions can act as building blocks to construct purely inorganic large frameworks. Unprecedented reactivity in the outer ring of these disk‐shaped species is also revealed. The Ln₃M₂ anions possess chirality owing to a {Sb₄O₄} cluster being encapsulated in left‐ or right‐handed orientations. Their ability to self‐associate in blackberry‐type vesicles in solution has been assessed for the Ce₃Co₂ derivative.     

Mechanical mixing of molecular crystals

Supramolecular reactions between crystalline materials can be exploited to prepare both hydrogen bonded co-crystals and coordination networks. Mechanical mixing of molecular crystals as well as kneading provide an alternative, solvent-free, route to novel materials hence these methods represent a green route to supramolecular solid-state chemistry.     

Characterization of Supramolecular Hidden Chirality of Hydrogen‐Bonded Networks by Advanced Graph Set Analysis

Supramolecular hidden chirality of hydrogen‐bonded (HB) networks of primary ammonium carboxylates was exposed by advanced graph set analysis from a symmetric viewpoint in topology. The ring‐type HB (R‐HB) networks are topologically regarded as faces, and therefore exhibit prochirality and positional isomerism due to substituents attached on the faces. To describe the symmetric properties of the faces, additional symbols, Re (right‐handed or clockwise), Si (left‐handed or anticlockwise), and m (mirror), were proposed. According to the symbols, various kinds of faces were classified based on the symmetry. This symmetry consideration of the faces enables us to precisely evaluate supramolecular chirality, especially its handedness, of 0D‐cubic, 1D‐ladder and 2D‐sheet HB networks that are composed of the faces. The 1D‐ladder and 2D‐sheet HB networks generate chirality by accumulating the chiral faces in 1D and 2D manners, respectively, whereas 0D‐cubic HB networks generate chirality based on combinations of eight kinds of faces, similar to the chirality of dice.     

Supramolecular Architecture from the Self-assembly of One-dimensionalCoordination Polymers and Hydrogen Bonds

The synthesis and characterization of coordination polymers have been a rapid growth area in recent years. The coordination polymers consist of 1D chains, 2D sheets or 3D networks in which metal-organic building blocks connected via coordinate and hydrogen bonds. They received considerable attention because of their versatile intriguing architectures, topologies and potential applications in materials1,2 . As rigid rod-like spacers, 4,4'-bipyridine and its analogues have been used to give r…     

Dynamics of Supramolecular Association Monitored by Fluorescence Correlation Spectroscopy

Supramolecular binding is a key process in many biological systems and in newly developed supramolecular assemblies. Most of the scientific work on these systems is focused on their structural properties and on the thermodynamics of the association process. However, the underlying dynamics are usually much less known, in spite of the great importance they have during the binding process in these highly dynamic systems. Understanding supramolecular binding in biological systems and controlling the functionality of new synthetic supramolecular systems can only be achieved through knowledge of the structure–dynamics relationship. There is a strong need for suitable techniques which cover the typically wide time interval of the association dynamics and which do not need a perturbation of the system. We briefly review high‐resolution fluorescence correlation spectroscopy (FCS) as a technique to monitor supramolecular dynamics and to give information on how structure determines the dynamics of host–guest association. The comparison of hosts and guests with different structures shows that geometrical and orientational requirements determine the association rate constant, whereas the dissociation is defined by the strength of specific interactions. As model hosts cyclodextrins and micelles are studied.     

Metal‐Directed Self‐Assembly of a Polyoxometalate‐Based Molecular Triangle: Using Powerful Analytical Tools to Probe the Chemical Structure of Complex Supramolecular Assemblies

A polyoxometalate‐based molecular triangle has been synthesized through the metal‐driven self‐assembly of covalent organic/inorganic hybrid oxo‐clusters with remote pyridyl binding sites. The new metallomacrocycle was unambiguously characterized by using a combination of ¹H NMR spectroscopy, 2D diffusion NMR spectroscopy (DOSY), electrospray ionization travelling wave ion mobility mass spectrometry (ESI‐TWIM‐MS), small‐angle X‐ray scattering (SAXS) and molecular modelling. The collision cross‐sections obtained from TWIM‐MS and the hydrodynamic radii derived from DOSY are in good agreement with the geometry‐optimized structures obtained by using theoretical calculations. Furthermore, SAXS was successfully employed and proved to be a powerful technique for characterizing such large supramolecular assemblies.     

Amplification of Chirality in Helical Supramolecular Columns

Strong amplification of chirality occurs in dynamic, but highly ordered, helical columns in n-butanol, for which one chiral seed molecule suffices to render a column of 400 molecules to become homochiral. The chiral columns are formed in a thermally dependent stepwise process. The transition from achiral stacks to helical columns is highly cooperative owing to well-defined intermolecular interactions. `Sergeant and Soldiers' measurements allow for the calculation of the association constant and cooperativity length of the homochiral segments. The `Sergeant and Soldiers' data on the number of molecules within a column show a strikingly good match with data obtained from a theoretical model describing the self-assembly of the discotic molecules as a function of temperature and concentration.