Different Strategies of Covalent Attachment of Oligonucleotide Probe onto Glass Beads and the Hybridization Properties

The glass bead is a new biochip support material for immobilization biomolecules, due to its independence and convenient rearrangement. In order to optimize the immobilization efficiency of oligonucleotides onto glass beads and obtain the highest hybridization efficiency, three commonly used coupling strategies have been studied for covalently attaching oligonucleotides onto large glass beads. Glass beads with 250 μm diameter were amino-silaned with 2% 3-aminopropyltrimethoxysilane (APTMS) and then reacted separately with glutaraldehyde, succinic anhydride and 1,4-phenylene diisothiocyanate (PDITC) to derive CHO beads, COOH beads and isothiocyanate-modified beads (NCS-Beads) accordingly. Afterwards, amino-terminal oligonucleotides were covalently attached onto the surface of beads achieved by three strategies mentioned above. The immobilization efficiency were studied to compare the three strategies, which turned out 2.55 × 10¹³ probes/cm² for CHO-Beads, 3.21 × 10¹³ probes/cm² for COOH beads and 6.68 × 10¹³ probes/cm² for NCS beads. It meant that the immobilization efficiency based on NCS beads was most acceptable. And the method, developed by attaching amino-terminal oligonucleotides onto these cyanate active beads, could be regarded as an efficient one for immobilizing oligonucleotides onto a solid surface. Moreover, in this paper, the hybridization properties of NCS bead-based oligonucleotides have been studied by employing Cy5-tagged complementary oligonucleotides. It was found that the high probe density NCS beads led to low hybridization efficiency possibly due to the existence of steric crowding. In addition, the equilibrium binding constant K _A was determined by employing Langmuir isotherm model, which was 7.0 × 10⁶ M⁻¹ for NCS beads with the density of 6.7 × 10¹³ probes/cm². Furthermore, it only took 60 min to reach hybridization equilibrium. These large microspheres (>100 μm) can be employed in the mesofluidic systems for automated heterogeneous assays.     

Determination of Organophosphorus Pesticides in Vegetables by GC with Pulsed Flame-Photometric Detection, and Confirmation by MS

The suitability of gas chromatography with pulsed flame-photometric detection (GC–PFPD) for determination of 24 organophosphorus (OP) pesticides in vegetables has been assessed. Pesticides were extracted with dichloromethane and analyzed without cleanup. The performance of the method was fit for purpose; recovery was between 73 and 110% and precision was better than 15%. Calculated lower limits of detection were typically <0.01 mg kg^?1, much lower than the maximum residue levels stipulated by European legislation. Three pesticides were detected in vegetable samples. Their presence was confirmed by GC with tandem mass spectrometric detection (GC–MS–MS).     

Influence of Cell Disruption and Elution on Cellulase Release of Clostridium straminisolvens (CSK1)

Clostridium straminisolvens (CSK1) is a novel cellulolytic bacterium isolated from a cellulose-degrading bacterial community MC1. In this study, the influence of the following cell disruption and elution methods on CSK1cellulase release was investigated: (1) freezing–thawing, (2) ultrasonication, (3) elution, (4) freezing–thawing following elution, (5) ultrasonication following elution, and lastly (6) high-pressure homogenization following elution. The activity of the cellulases CMCase, β-glucosidase, Avicelase, FPase, and xylanase in crude extracts increased 81.5, 23.8, 87.7, 46.3, and 51.7 %, respectively, with an observed optimal treatment method for each cellulase type. The release of protein from CSK1 cells increased following either cell disruption or elution and was highest at 88.3 % in the homogenization high pressure following elution treatment. A newly observed protein was present following cell elution. The performance of cell elution as determined by real time-PCR indicated that the first time cell elution removed more than 90 % of the CSK1 cells from the substrate. These findings demonstrate that cell disruption and elution are effective methods for inducing cellulase release, and elution is the key step for CSK1. To our knowledge, this study presents the first evidence of optimal treatments for induction of cellulase release of Clostridium straminisolvens. This information will be of great value for use in subsequent efforts to better understand the cellulase characteristics of CSK1 and cellulose degradation mechanisms of the MC1 community.     

Formation mechanism of nanostructured Ag films from Ag2O particles using a sonoprocess

Nanostructured Ag films composed of nanoparticles and nanorods can be formed by the ultrasonication of ethanol solutions containing Ag₂O particles. The present work examined the formation process of these films from ethanol solutions by two different agitation methods, including ultrasonication and mechanical stirring. The mass-transfer process from Ag₂O particles to ethanol solvent is accelerated by the mechanical effects of ultrasound. Ag⁺ ions and intermediately reduced Ag clusters were released into the ethanol. These Ag⁺ ions and Ag clusters provide absorption bands at 210, 275 and 300 nm in UV-vis spectra. These bands were assigned to the absorption of Ag⁺, Ag ₄ ²⁺ and Ag_n (n?≈?3). The Ag_n clusters that readily grow to become Ag nanoparticles were formed due to the surface reaction of Ag₂O particles with ethanol under ultrasonication. The reactions of Ag⁺ ions in ethanol to form Ag nanomaterials (through the formation of Ag ₄ ²⁺ clusters) were also accelerated by ultrasonication.     

Heavy Metal Removal from Synthetic Solutions with Magnetic Beads Under Magnetic Field

The aim of this study is to prepare magnetic beads which can be used for the removal of heavy metal ions from synthetic solutions. Magnetic poly(ethylene glycol dimethacrylate‐vinyl imidazole) [m‐poly(EGDMA‐VIM)] beads were produced by suspension polymerization in the presence of magnetite Fe₃O₄ nano‐powder. The specific surface area of the m‐poly(EGDMA‐VIM) beads was found to be 63.1 m²/g with a size range of 150–200 µm in diameter and the swelling ratio was 85%. The average Fe₃O₄ content of the resulting m‐poly(EGDMA‐VIM) beads was 12.4%. The maximum binding capacities of the m‐poly(EGDMA‐VIM) beads were 32.4 mg/g for Cu²⁺, 45.8 mg/g for Zn²⁺, 84.2 mg/g for Cd²⁺and 134.5 mg/g for Pb²⁺. The affinity order on mass basis is Pb²⁺>Cd²⁺>Zn²⁺>Cu²⁺. Equilibrium data agreed well with the Langmuir model. pH significantly affected the binding capacity of the magnetic beads. Binding of heavy metal ions from synthetic wastewater was also studied. The binding capacities were 26.2 mg/g for Cu²⁺, 33.7 mg/g for Zn²⁺, 54.7 mg/g for Cd²⁺ and 108.4 mg/g for Pb²⁺. The magnetic beads could be regenerated up to about 97% by treating with 0.1 M HNO₃. These features make m‐poly(EGDMA‐VIM) beads a potential candidate for support of heavy metal removal under magnetic field.     

Chemiluminescent determination of the activity of caspase-3 using a specific peptide substrate and magnetic beads

We report on a new scheme for the determination of the activity of caspase-3 using a specific peptide labeled with N-(4-aminobutyl)-N-ethylisoluminol (ABEI) as a chemiluminescent (CL) probe and on the development of magnetic separation technology. Firstly, the ABEI-labeled and biotinylated peptide was prepared and conjugated to streptavidin-coated magnetic beads (MBs) to form f-MBs (functionalized magnetic beads). The f-MBs contain a site (DEVD, Asp-Glu-Val-Asp) that is cleaved by caspase-3. Upon cleavage, the terminal residue attached to ABEI can dissociate from the f-MBs and can be used for CL detection. CL intensity is linearly related to the concentration of caspase-3 in the range 1.0 to 600 ng mL^?1, with a detection limit of 0.3 ng mL^?1. The relative standard deviation of the assay is 3.6 % at a level of 50 ng mL^?1 of caspase-3 (for n?=?11). The CL assay has been applied to the determination of caspase-3 in Jurkat cell extract with recoveries between 96.6 % and 106.1 % (n?=?5).

In Vitro Propagation and Assessment of the Genetic Fidelity of Musa acuminata (AAA) cv. Vaibalhla Derived from Immature Male Flowers

An efficient in vitro propagation method has been developed for the first time for Musa acuminata (AAA) cv. Vaibalhla, an economically important banana cultivar of Mizoram, India. Immature male flowers were used as explants. Murashige and Skoog’s (MS) medium supplemented with plant growth regulators (PGRs) were used for the regeneration process. Out of different PGR combinations, MS medium supplemented with 2 mg L^?1 6-benzylaminopurine (BAP) + 0.5 mg L^?1 α-naphthalene acetic acid (NAA) was optimal for production of white bud-like structures (WBLS). On this medium, explants produced the highest number of buds per explant (4.30). The highest percentage (77.77) and number (3.51) of shoot formation from each explants was observed in MS medium supplemented with 2 mg L^?1 kinetin + 0.5 mg L^?1 NAA. While MS medium supplemented with a combination of 2 mg L^?1 BAP + 0.5 mg L^?1 NAA showed the maximum shoot length (14.44 cm). Rooting efficiency of the shoots was highest in the MS basal medium without any PGRs. The plantlets were hardened successfully in the greenhouse with 96 % survival rate. Random amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR) markers were employed to assess the genetic stability of in vitro regenerated plantlets of M. acuminata (AAA) cv. Vaibalhla. Eight RAPD and 8 ISSR primers were successfully used for the analysis from the 40 RAPD and 30 ISSR primers screened initially. The amplified products were monomorphic across all the regenerated plants and were similar to the mother plant. The present standardised protocol will find application in mass production, conservation and genetic transformation studies of this commercially important banana.     

Purification and biochemical properties of SDS-stable low molecular weight alkaline serine protease from Citrullus colocynthis

A low molecular weight serine protease from seeds of Citrullus colocynthis was purified to electrophoretic homogeneity with high level of catalytic efficiency (22,945 M^?1 S^?1). The enzyme was a monomer with molecular mass of 25 kDa estimated by SDS–PAGE. The enzyme was highly active over a pH range of 6.5–9.0 and temperature range of 20–80 °C, with maximum activity at pH 7.5 and at 50 °C. The K_m and K_cat were 73 μg/mL and 67/s, respectively. The enzyme was strongly inhibited by PMSF, moderately by soybean trypsin inhibitor, indicating that the enzyme was a serine protease. The enzyme retained 86 and 73% of its activity in the presence of urea and DTT, respectively, and its activity was slightly enhanced in the presence of anionic detergent (SDS). Thus, the enzyme is a novel SDS-stable protease with high catalytic efficiency over wide ranges of pH and temperature which is commercially promising for various industrial applications.     

Improved Protocol for Somatic Embryogenesis and Calcium Alginate Encapsulation in Anethum graveolens L.: A Medicinal Herb

An improved procedure has been developed for efficient somatic embryogenesis in Anethum graveolens. Green friable embryogenic callus was obtained from hypocotyl segments on medium augmented with 2,4-dichlorophenoxyacetic acid (2,4-D). The highest embryogenic callus induction frequency of 87 % was obtained on Murashige and Skoog (MS) medium containing 1.13 μM 2,4-D. At lower concentration of 2,4-D (0.34 μM) callus turned dark in color and slow growing. Embryogenic cultures (76 %) responded with a mean number of 43 globular and 18 heart stage embryos. Somatic embryo maturation and subsequent conversion into plantlets took place on MS lacking growth regulators. Maximum number of somatic embryos developed on MS medium was 128.3 (per flask) and a plantlet conversion of 82 % was observed. Calcium alginate beads were produced by encapsulating somatic embryos. Highest percent germination (83 %) was observed on 0.8 % agar solidified MS medium with the plantlets acquiring an average length of 2.1 cm. Encapsulated somatic embryos could be stored at 4 °C up to 60 days with a conversion frequency of 49.3 %. Highest protein and proline content has been observed in embryogenic callus with small globular embryos. During morphological differentiation of the somatic embryos, changes in the antioxidant enzymatic system were observed. Superoxide dismutase (SOD) activity increased during initial stages and decreased catalase (CAT), peroxidase (POD), and ascorbate peroxidase (APX) activities were detected.     

Improving the slurry fuel preparation performance to recycle municipal sewage sludge by combined alkali and ultrasonication pretreatment

Municipal wastewater sludge (hereafter, sludge) is economically recycled by mixing with coal to prepare slurry fuels, called coal sludge slurry (CSS). However, raw sludge needs to be pretreated before being prepared as CSS because of its high viscosity. Alkali and ultrasonication pretreatment can effectively disrupt the sludge flocs and improve slurrying performance. The alkali pretreatment method takes a long time but has a low cost, whereas the ultrasonication pretreatment method needs a high energy input but takes a short time. This study combined these two methods with complementary advantages to reduce the sludge pretreatment time and ultrasonication energy demand to improve the slurrying performance for sludge. Results showed that, compared with only alkali and only ultrasonication, the combined alkali and ultrasonication pretreatment method had stronger effects on reducing slurry viscosity. The characteristic viscosity η _c of CSS prepared by raw sludge was 1663.60 mPa s. It was reduced to 1033.44 and 1472.10 mPa s, respectively, after the sludge was only pretreated by NaOH and Ca(OH)₂ at a dosage of 10 % dry sludge (DS) for 2 h, while it was reduced to 1205.43 mPa s after the sludge was only pretreated by ultrasonication of 30 kJ/g DS. After combined pretreatment, η _c of CSS was reduced to 774.98 mPa s (NaOH of 10 % DS for 2 h + ultrasonication of 30 kJ/g DS) and 1083.24 mPa s (Ca(OH)₂ of 10 % DS for 2 h + ultrasonication of 30 kJ/g DS), respectively. Apparently, the combined method can effectively decrease the alkali dosage or the ultrasonication energy input.     

Dielectric and energy storage properties of barium strontium titanate based glass–ceramics prepared by sol–gel method

Ba_0.6Sr_0.4TiO₃ based glass–ceramics were prepared by sol–gel process. Influences of B–Si–O glass content on the microstructure, dielectric, and energy storage properties of the BST based glass–ceramics have been investigated. Perovskite barium strontium titanate phase was found at annealing temperature 800 °C. A secondary phase Ba₂TiSi₂O₈ was detected and lowered by declining the mole ratio of element Si (from 50 to 25 mol%) in glass additive. Microstructural observation indicated that the microstructure homogeneity can be improved by glass addition till 2 mol%, while worsened by excessive glass concentrations. Due to relatively homogeneous microstructure, the maximum discharged energy density and breakdown strength were also obtained in samples with 2 mol% glass additive, which were found to be 0.553 J/cm³ and 43.2 kv/mm, respectively. Microscopic observation of the breakdown area was performed and the mechanical failure, including the formation and accumulation of micro-cracks during the dielectric breakdown process, was considered to be the main cause of dielectric breakdown. Results of the charging and discharging energy densities show that the BST based glass–ceramics prepared by sol–gel method has a potential for pulse power applications.     

Purification and Characterization of a Urethanase from Penicillium variabile

Urethanase produced by Penicillium variabile was purified through ultrasonication, concentration by polyethylene glycol 20,000, and Superdex G-200 gel filtration chromatography. The molecular weight of urethanase was determined to be around 96 kDa by gel filtration. The purified enzyme showed a single band in SDS-PAGE with the molecular weight of ~13.7 kDa, which suggests that the enzyme has a multimeric structure composed of the same subunits. Peptide map fingerprinting analysis was then carried out by MALDI/TOF-TOF MS. Within the known sequences in NCBI, glucosamine-6-phosphate deaminase and 6-phosphogluconate dehydrogenase get high score as compared with urethanase. Sequence analysis informs that N-terminal sequence of urethanase is GTNTADNDAA. The Minchaelis constant (K _m) and maximum reaction rate (V _m) of urethanase are 27.2 mmol/L and 156.25 μmol/L min, respectively.     

Gas phase SMB for propane/propylene separation using enhanced 13X zeolite beads

A gas phase simulated moving bed technology using improved 13X zeolite beads and isobutane as desorbent is assessed for the separation of propane/propylene. Adsorption equilibrium (via gravimetric method) and dynamics (via breakthrough curves) were determined in order to validate the mathematical model used to describe the adsorption process. Simulation results have shown that it is possible to separate propylene from a mixture with propane using gas phase SMB technology. The results indicate that high purity propylene (99.99 % desorbent free basis) can be recovered up to 99.96 % with a productivity of 17.6 mol kg^?1 h^?1, with propane being also recovered at high levels (99.98 %) and high purity (99.89 % desorbent free basis). Comparing the SMB simulation results obtained for this new 13X zeolite beads with those obtained with a commercial 13X zeolite characterized elsewhere, it was found that the productivity of the process was raised by 25 %, with half desorbent consumption.     

Rapid method for the measurement of circulating thyroid hormones in low volumes of teleost fish plasma by LC-ESI/MS/MS

Thyroid hormones are critical regulators of normal development and physiological functioning in all vertebrates. Radioimmunoassay (RIA) approaches have been the method of choice for measuring circulating levels of thyroid hormones in vertebrates. While sensitive, RIA-based approaches only allow for a single analyte measurement per assay, can lack concordance across platforms and laboratories, and can be prone to analytical interferences especially when used with fish plasma. Ongoing advances in liquid chromatography tandem mass spectrometry (LC/MS/MS) have led to substantial decreases in detection limits for thyroid hormones and other biomolecules in complex matrices, including human plasma. Despite these advances, current analytical approaches do not allow for the measurement of native thyroid hormone in teleost fish plasma by mass spectrometry and continue to rely on immunoassay. In this study, we developed a new method that allows for the rapid extraction and simultaneous measurement of total T4 (TT4) and total T3 (TT3) in low volumes (50 μL) of fish plasma by LC/MS/MS. Methods were optimized initially in plasma from rainbow trout (Oncorhynchus mykiss) and applied to plasma from other teleost fishes, including fathead minnows (Pimephales promelas), mummichogs (Fundulus heteroclitus), sockeye salmon (Oncorhynchus nerka), and coho salmon (Oncorhynchus kisutch). Validation of method performance with T4- and T3-spiked rainbow trout plasma at 2 and 4 ng/mL produced mean recoveries ranging from 82 to 95 % and 97 to 105 %, respectively. Recovery of ¹³C₁₂-T4 internal standard in plasma extractions was: 99?±?1.8 % in rainbow trout, 85?±?11 % in fathead minnow, 73?±?5.0 % in mummichog, 73?±?1.7 % in sockeye salmon, and 80?±?8.4 % in coho salmon. While absolute levels of thyroid hormones measured in identical plasma samples by LC/MS/MS and RIA varied depending on the assay used, T4/T3 ratios were generally consistent across both techniques. Less variability was measured among samples subjected to LC/MS/MS suggesting a more precise estimate of thyroid hormone homeostasis in the species targeted. Overall, a sensitive and reproducible method was established that takes advantage of LC/MS/MS techniques to rapidly measure TT4 and TT3 with negligible interferences in low volumes of plasma across a variety of teleost fishes.     

Determination of Chloramphenicol Residues in Foods by ELISA and LC-MS/MS Coupled with Molecularly Imprinted Solid Phase Extraction

The combination of molecularly imprinted solid-phase extraction (MISPE) with ELISA and LC-MS/MS was developed for the detection of chloramphenicol (CAP) in honey samples. Significant recoveries of 99.1 ± 7.1 and 98.8 ± 8.2% were obtained for intra- and inter-assay determination by ELISA determination, respectively. The limit of detection of CAP was 0.034 μg kg^?1 and the limit of quantification was 0.046 μg kg^?1. Determination and validation of CAP by using LC-MS/MS were performed following the same extraction and purification process as for the ELISA. The results demonstrated that the CAP samples purified by using MISPE were simultaneously applicable to analysis by ELISA and LC-MS/MS.     

Utilization of water-contained surfactant-based ultrasound-assisted microextraction followed by liquid chromatography for determination of polycyclic aromatic hydrocarbons and benzene in commercial oil sample

In this work, a microextraction method, water-contained surfactant-based ultrasound-assisted, followed by high-performance liquid chromatography (HPLC) was developed for determination of five polycyclic aromatic hydrocarbons (PAHs) and benzene in commercial oil samples. During the microextraction method, a micellar solution as the only extraction solvent was injected into the oil sample in a conical bottom glass tube and formed a cloudy solution. The dispersion process was accelerated by applying ultrasound irradiation. Phase separation was done by centrifugation and then the lower sediment phase was directly analyzed by HPLC. A chemometrics approach was applied for the optimization of the extraction condition. Under the optimum conditions, the proposed method showed good linearity within the different ranges for different analytes (e.g., 0.10–200 ng mL^?1 for phenanthrene), the square of the correlation coefficient was higher than 0.999 and the appropriate limit of detection was in the range of 0.04–0.41 ng mL^?1. The recoveries in all cases were above 95 %.     

Determination of Nicotine in Dried Mushrooms by Using a Modified QuEChERS Approach and GC–MS–MS

Levels of nicotine higher than the maximum residue level were detected in edible mushrooms. Analyses of self-collected and purchased dried mushrooms were performed with a QuEChERS approach. A small amount (2.5 g) of dried sample matrix was mixed with 5 mL sodium hydroxide solution, 2.5 g of sodium sulfate/sodium chloride mixture (4:1) and 5 mL ethyl acetate. The organic phase was cleaned by using dispersive solid-phase extraction and analysed by GC–MS–MS. The linear range of the method was 0.01–10.00 mg kg^?1 and the limit of detection 0.006 mg kg^?1 on dry weight basis by using EURACHEM method.     

Determination of Chlorophenols and Alkylphenols in Water and Juice by Solid Phase Derivative Extraction and Gas Chromatography–Mass Spectrometry

A solid phase derivative extraction method using acetic anhydride was developed for the determination of chlorophenols and alkylphenols in water and fruit juice by gas chromatography–mass spectrometry (GC–MS). The quantitative extraction was performed by passing 100 mL of sample prepared in 0.1 mol L^?1 sodium hydroxide through a column packed with 500 mg of a strong anion-exchange resin at a flow rate of 0.75 mL min^?1. The retained phenols were quantitatively derivatized in the column by the introduction of 0.25 mL of acetic anhydride. The derivatized phenols were eluted with 3.0 mL of hexane and the effluent was dried under nitrogen. The final volume was diluted to fifty microliters with hexane and analyzed by GC–MS. Under the optimum conditions, preconcentration factors of 2000, limits of detection between 0.005 and 1.796 µg L^?1, and relative standard deviations of 2.1% to 6.7% were obtained. The method was successfully applied to wastewater and fruit juice and the recoveries of phenols were between 76% and 111%.     

Analysis of Biomolecules by Atmospheric Pressure Visible-Wavelength MALDI-Ion Trap-MS in Transmission Geometry

We report the development of a new AP visible-wavelength MALDI-ion trap-MS instrument with significantly improved performance over our previously reported system (Int. J. Mass Spectrom. 315, 66–73 (2012)). A Nd:YAG pulsed laser emitting light at 532 nm was used to desorb and ionize oligosaccharides and peptides in transmission geometry through a glass slide. Limits of detection (LODs) achieved in MS mode correspond to picomole quantities of oligosaccharides and femtomole quantities of peptides. Tandem MS (MS/MS) experiments enabled identification of enzymatically digested proteins and oligosaccharides by comparison of MS/MS spectra with data found in protein and glycan databases. Moreover, the softness of ionization, LODs, and fragmentation spectra of biomolecules by AP visible-wavelength MALDI-MS were compared to those obtained by AP UV MALDI-MS using a Nd:YAG laser emitting light at 355 nm. AP visible-wavelength MALDI appears to be a softer ionization technique then AP UV MALDI for the analysis of sulfated peptides, while visible-wavelength MALDI-MS, MS/MS, and MS/MS/MS spectra of other biomolecules analyzed were mostly similar to those obtained by AP UV MALDI-MS. Therefore, the methodology presented will be useful for MS and MSⁿ analyses of biomolecules at atmospheric pressure. Additionally, the AP visible-wavelength MALDI developed can be readily used for soft ionization of analytes on various mass spectrometers.

113Sn-113mIn generator with a glass beads column

The adsorption characteristics of ¹¹³Sn(IV) and ^113mIn(III) on glass beads from NaCl solutions have been studied. On the basis of these studies, ¹¹³Sn-^113mIn generator has been prepared by adsorbing ¹¹³Sn on the glass beads column. ^113mIn has been eluted by the 0.16M NaCl solution with pH 3.0, remaining ¹¹³Sn adsorbed on the glass beads. The yield of ^113mIn has been about 73% in the first 6 ml of eluate, while the breakthrough of ¹¹³Sn has been about 0.042%.