Direct dynamics study on the reaction of acetaldehyde with ozone

The hydrogen abstraction reaction of ozone with acetaldehyde has been studied theoretically over the temperature range 250-2500 K. Two different reactive sites of acetaldehyde molecule, CH(3) and CHO groups have been investigated, and results confirm that the CHO group is a highly reactive site. In this study, the geometries and harmonic vibrational frequencies of all stationary points are calculated at the MPW1K, BHandHLYP, and MPWB1K levels of theory. The minimum energy paths (MEPs) were obtained at the MPW1K/6-31+G(d,p) level of theory. To refine the energies along the MEPs of each channel, single-point energy calculations were performed by a higher-level energy calculation method (denoted as HL). The rate constants were evaluated based on the MEPs from the HL method in the temperature range 250-2500 K by using the conventional transition state theory (TST), the canonical variational transition state theory (CVT), the microcanonical variational transition state theory (muVT), the CVT coupled with small-curvature tunneling (SCT) correction (CVT/SCT), and the muVT coupled with Eckart tunneling correction (muVT/Eckart). The fitted three-parameter Arrhenius expressions of the calculated CVT/SCT and muVT/Eckart rate constants of the H abstraction from CHO group are k CVT/SCT(T) = 4.92 x 10(-27).T 3.77.e(-7867.0/T) and k muVT/Eckart(T) = 2.10 x 10(-27).T(3.90).e(-7706.2/T), respectively. The fitted three-parameter Arrhenius expressions of the calculated CVT/SCT and muVT/Eckart rate constants of the H abstraction from CH3 group are k(CVT/SCT)(T) = 1.27 x 10(-27).T(3.94).e(-14554.1/T) and k muVT/Eckart(T) = 1.62 x 10(-26).T(3.66).e(-15459.8/T), respectively.     

Conformational insights into furo- and thieno[2,3-b]indolines derived from coupling constants and molecular modeling

The extent to which conformational preferences of fused heterocyclic five-membered rings change with the nature of the heteroatom (O and S) was investigated in furo- (1, 2) and thieno[2,3-b]indolines (3, 4) by the combined use of 1H NMR spectroscopy and density functional theory (DFT) calculations. In contrast to the behavior observed for pyrroloindolines, the furo- and thienoindolines exist in solution in only one conformer, with structures in the 2E-2T3 (1,2) and 2T3-E (3,4) North/West region of the pseudorotational wheel, and with pseudorotation phase angles (P) of 315.8, 311.6, 337.2 and 331.6 degrees, respectively.     

H3PO→H2POH异构化反应的直接动力学研究

在QCISD(T)/6-311C++G(2df,2pd)//QCISD/6-311C++G(d,p)+ZPE水平上,对H3PO的异构化反应H3PO→(1)H2POH(trans)→(2)H2POH(cis)进行了计算研究.结果表明,H原子由P原子向O原子迁移反应(1)的能垒为250.0kJ/mol,是反应速率控制步骤,而O_H键绕P_O键旋转的构型转化反应(2)的能垒只为12.3kJ/mol.利用经典过渡态理论(TST)与变分过渡态理论(CVT)分别计算了反应(1)在200～2000K温度区间内的速率常数kTST和kCVT,获得了经小曲率隧道效应(SCT)及Eckart模型校正后的速率常数kTST/Eckart和kCVT/SCT.对只涉及H原子迁移的反应(1),量子力学隧道效应的影响在低温段非常明显,而变分效应对反应速率常数的影响很小.     

Optimized relaxivity and stability of [Gd(H(2,2)-1,2-HOPO)(H2O)]- for use as an MRI contrast agent

Relaxometry and solution thermodynamic measurements show that Gd(H(2,2)-1,2-HOPO) is a good candidate as a contrast agent for magnetic resonance imaging (MRI-CA). Acidic, octadentate H(2,2)-1,2-HOPO forms a very stable Gd(III) complex [pGd=21.2(2)]. The coordination sphere at the Gd(III) center is completed by one water molecule that is not replaced by common physiological anions. In addition, this ligand is highly selective for Gd(III) binding in the presence of Zn(II) or Ca(II). The symmetric charge distribution of the 1,2-HOPO chelates is associated with favorably long electronic relaxation time T1,2e comparable to those of GdDOTA. This, in addition to the fast water exchange rate typical of HOPO chelates, improves the relaxivity to r1p=8.2 mM-1 s-1 (0.47 T). This remarkably high value is unprecedented for small-molecule, q=1 MRI-CA.     

Modeling furanose ring dynamics in DNA

Determination of the conformational flexibility of the furanose ring is of vital importance in understanding the structure of DNA. In this work we have applied a model of furanose ring motion to the analysis of deuterium line shape data obtained from sugar rings in solid hydrated DNA. The model describes the angular trajectories of the atoms in the furanose ring in terms of pseudorotation puckering amplitude (q) and the pseudorotation puckering phase phi. Fixing q, the motion is thus treated as Brownian diffusion through an angular-dependent potential U(phi). We have simulated numerous line shapes varying the adjustable parameters, including the diffusion coefficient D, pseudorotation puckering amplitude q, and the form of the potential U(phi). We have used several forms of the potential, including equal double-well potentials, unequal double-well potentials, and a potential truncated to "second order" in the Fourier series. To date, we have obtained best simulations for both equilibrium and nonequilibrium (partially relaxed) solid-state deuterium NMR line shapes for the sample [2' '-2H]-2'-deoxycytidine at the position C3 (underlined) in the DNA sequence [d(CGCGAATTCGCG)]2, using a double-well potential with an equal barrier height of U(0) = 5.5k(B)T ( approximately 3.3 kcal/mol), a puckering amplitude of q = 0.4 A, and a diffusion coefficient characterizing the underlying stochastic jump rate D = 9.9 x 10(8) Hz. Then the rate of flux for the C-D bond over the barrier, i.e., the escape velocity or the overall rate of puckering between modes, was found to be 0.7 x 10(7) Hz.     

Intramolecular dynamics of 1,2,3-trifluorobenzene radical anions as studied by OD ESR and quantum-chemical methods

Ab initio UMP2, RMP2, DFT/UB3LYP, and CBS-QB3 calculations have shown that the adiabatic potential energy surface (PES) of the 1,2,3-trifluorobenzene radical anion is a pseudorotation surface formed by nonplanar stationary structures. The low (approximately 2-4 kcal/mol) energy barriers in the path of pseudorotation imply manifestations of spectral exchange in the ESR spectra of this radical anion. The optically detected ESR of radical ion pairs was used to obtain the ESR spectrum of 1,2,3-trifluorobenzene radical anion in liquid squalane solution and to study temperature variations in the spectrum over the range of 243-325 K. The spectrum is a doublet of triplets with hfc constants of a(F(2)) = 29 mT and a(2F(1,3)) = 7.6 mT at T = 243 K. The experimental hfc constants are temperature-dependent. Calculations of the temperature dependence of hfc constants in the framework of the model of classical nuclei motion along the pseudorotation coordinate reproduce well the experimental data.     

Novel synthesis, static and dynamic properties, and structural characteristics of 5-cyano[n](2,4)pyridinophane-6-ones (n= 9-6) and their chemical transformations

A novel synthesis of 5-cyano[n](2,4)pyridinophane-6-ones 12a-d (n= 9, 8, 7, and 6) consists of allowing cyanoacetatoamide to react with cycloalk-2-enones. Their static and dynamic properties as well as structural characteristics are studied on the basis of their spectroscopic properties, cyclic voltammetry, and theoretical calculations. The (1)H and (13)C NMR spectra at various temperatures have clarified the dynamic behavior of the methylene chains for [7](2,4)- and [6](2,4)pyridinophane-6-one derivatives 12c and 12d. The energy barrier (Delta G(++)) of the bridge flipping of 12c is estimated to be 12.0 kcal mol(-1)(T(c)= 0 degree C). On the other hand, compound 12d undergoes pseudorotation (conformational change of the methylene chain) at room temperature, and does not undergo bridge flipping even at 150 degree C in DMSO-d(6). The energy barrier (Delta G(++)) of the pseudorotation of the methylene chain 12d of is found to be 10.5 kcal mol(-1)(T(c)=-25 degree C), and thus, two stable conformers of the hexamethylene bridge of 12d are determined as predicted by theoretical calculations. Deformation of the pyridone ring of 12d is also determined by X-ray crystallographic analysis. Furthermore, chemical transformations of 12a-c leading to 5-carbamoyl[n](2,4)pyridinophanes 15a-c are also accomplished successfully in moderate to good yields.     

Lanthanide(III) complexes with ligands derived from a cyclen framework containing pyridinecarboxylate pendants. The effect of steric hindrance on the hydration number

Two new macrocyclic ligands, 6,6′-((1,4,7,10-tetraazacyclododecane-1,7-diyl)bis(methylene))dipicolinic acid (H2DODPA) and 6,6′-((4,10-dimethyl-1,4,7,10-tetraazacyclododecane-1,7-diyl)bis(methylene))dipicolinic acid (H2Me-DODPA), designed for complexation of lanthanide ions in aqueous solution, have been synthesized and studied. The X-ray crystal structure of [Yb(DODPA)](PF6)·H2O shows that the metal ion is directly bound to the eight donor atoms of the ligand, which results in a square-antiprismatic coordination around the metal ion. The hydration numbers (q) obtained from luminescence lifetime measurements in aqueous solution of the Eu(III) and Tb(III) complexes indicate that the DODPA complexes contain one inner-sphere water molecule, while those of the methylated analogue H2Me-DODPA are q = 0. The structure of the complexes in solution has been investigated by 1H and 13C NMR spectroscopy, as well as by theoretical calculations performed at the density functional theory (DFT; mPWB95) level. The minimum energy conformation calculated for the Yb(III) complex [Λ(λλλλ)] is in good agreement with the experimental structure in solution, as demonstrated by the analysis of the Yb(III)-induced paramagnetic 1H shifts. The nuclear magnetic relaxation dispersion (NMRD) profiles recorded for [Gd(Me-DODPA)]+ are typical of a complex with q = 0, where the observed relaxivity can be accounted for by the outer-sphere mechanism. However, [Gd(DODPA)]+ shows NMRD profiles consistent with the presence of both inner- and outer-sphere contributions to relaxivity. A simultaneous fitting of the NMRD profiles and variable temperature 17O NMR chemical shifts and transversal relaxation rates provided the parameters governing the relaxivity in [Gd(DODPA)]+. The results show that this system is endowed with a relatively fast water exchange rate k(ex)(298) = 58 × 10(6) s(–1).     

Oligobisvelcraplex: self-assembled linear oligomer by solvophobic pi-pistacking interaction of bisvelcrands based on resorcin[4]arene

[reaction: see text] Bisvelcrand 3 based on resorcin[4]arene was obtained by a stepwise route, and the formation of oligobisvelcraplex 3(n) by solvophobic pi-pistacking interaction was observed. (1)H NMR spectroscopic studies revealed that DeltaG(++)(pseudorotation) of oligobisvelcraplex 3(n) is 16.7 kcal mol(-1) in C(6)D(5)NO(2) solution. The pulsed field gradient spin-echo (PGSE) NMR experiment and VPO experiment showed that the number of aggregation (n) ranges from 7 to 10 in CHCl(3) solution at 298 K. In high concentration, bisvelcrand 3 tends to form gels or fiber.     

The synthesis, structure and dynamic behaviour of disubstituted alkenylphosphine derivatives of [Rh6(CO)16

A series of [Rh(6)(CO)(16)] substituted derivatives containing Ph(2)P(alkenyl) ligands has been synthesized starting from the [Rh(6)(CO)(16-x)(NCMe)(x)](x= 1, 2) clusters and Ph(2)P((CH(2))(n)CH=CH(2))(n= 2, 3) phosphines. It was shown that the terminal alkenyl substituents in these phosphines easily undergo isomerization in the coordination sphere of the hexarhodium complexes to give the allyl -CH(2)CH=C(H)R (R = Me and Et) fragments coordinated through the double bond of the rearranged organic moieties. The solid-state structure of two clusters, [Rh(6)(CO)(14)(mu2,kappa3-Ph(2)PCH(2)CH=C(H)CH(3))](4) and [Rh(6)(CO)(14)(mu2,kappa3-Ph(2)PCH(2)CH=C(H)CH(2)CH(3))](8), was established by X-ray crystallography. Solution structures of the products obtained were also characterized by IR and NMR ((1)H, (31)P, (1)H-(1)H COSY and (1)H-(1)H NOE) spectroscopy. It was shown that 4 and 8 exist in solution as mixtures of three isomers (A, B and C), which differ in the conformation of the coordinated allyl fragment. A similar (two species, A and B) equilibrium was found to occur in the solution of the [Rh(6)(CO)(14)(mu2,kappa3-Ph(2)PCH(2)CH=CH(2))](2) cluster. The dynamic behaviour of 2, 4 and 8[Rh(6)(CO)(14)(mu2,kappa3-Ph(2)PCH=CH(2))] has been studied using VT (31)P and (1)H-(1)H NOESY NMR spectroscopy, rate constants and activation parameters of the (A<-->B) isomerization processes were determined. It was shown that the most probable mechanism of this isomerization involves a dissociative [Rh6(CO)(14)(kappa1-Ph(2)P(alkenyl))] intermediate and re-coordination of the double bond to the same metal atom where the process started from. The conversion of the A and B species in and into the third isomer very likely occurs through the transfer of an allyl hydrogen atom onto the rhodium skeleton to give eventually cis conformation of the coordinated allyl fragment.     

Anisotropic pseudorotation of the photoexcited triplet state of fullerene C60 in molecular glasses studied by pulse EPR

Spin-polarized echo-detected electron paramagnetic resonance (EPR) spectra and the transversal relaxation rate T2(-1) of the photoexcited triplet state of fullerene C60 molecules were studied in o-terphenyl, 1-methylnaphthalene, and decalin glassy matrices. The model is composed of a fast (correlation time approximately 10(-12) s) pseudorotation of (3)C60 in a local anisotropic potential created by interaction of the fullerene molecule with the surrounding matrix molecules. In simulations, this potential is assumed to be axially symmetric around some axis of a preferable orientation in a matrix cage. The fitted value of the potential was found to depend on the type of glass and to decrease monotonically with a temperature increase. A sharp increase of the T2(-1) temperature dependence was found near 240 K in glassy o-terphenyl and near 100 K in glassy 1-methylnaphthalene and decalin. This increase probably is related to the influence on the pseudorotation of the onset of large-amplitude vibrational molecular motions (dynamical transition in glass) that are known for glasses from neutron scattering and molecular dynamics studies. The obtained results suggest that molecular and spin dynamics of the triplet fullerene are extremely sensitive to molecular motions in glassy materials.     

Reaction-path dynamics and theoretical rate constants for the CH(n)F(4-n) + O3 --> HOOO + CH(n-1)F(4-n) (n = 2,3) reactions

We present a theoretical study of the hydrogen abstraction reactions from CH(3)F and CH(2)F(2) by an ozone molecule. The geometries and harmonic vibrational frequencies of all stationary points are calculated at the MPW1K, BHandHLYP, and MPWB1K levels of theory. The energies of all of the stationary points were refined by using both higher-level (denoted as HL) energy calculations and QCISD(T)/6-311++G(2df,2pd) calculations based on the optimized geometries at the MPW1K/6-31+G(d,p) level of theory. The minimum energy paths (MEPs) were obtained by the MPW1K/6-31+G(d,p) level of theory. Energetic information of the points along the MEPs is further refined by the HL method. The rate constants were evaluated on the basis of the MEPs from the HL level of theory in the temperature range 200-2500 K by using the conventional transition-state theory (TST), the canonical variational transition-state theory (CVT), the microcanonical variational transition-state theory (microVT), the CVT coupled with the small-curvature tunneling (SCT) correction (CVT/SCT), and the microVT coupled with the Eckart tunneling correction (microVT/Eckart) based on the ab initio calculations. A general agreement was found among the TST, CVT, and microVT theories. The fitted three-parameter Arrhenius expressions of the calculated forward CVT/SCT and microVT/Eckart rate constants of the ozonolysis of fluoromethane are k(CVT/SCT)(T) = 2.76 x 10(-34)T(5.81)e((-13975/)(T)) and k(microVT/Eckart)(T) = 1.15 x 10(-34)T(5.97)e((-14530.7/)(T)), respectively. The fitted three-parameter Arrhenius expressions of the calculated forward CVT/SCT and microVT/Eckart rate constants of the ozonolysis of difluoromethane are k(CVT/SCT)(T) = 2.29 x 10(-36)T(6.42)e((-15451.6/)(T)) and k(microVT/Eckart)(T) = 1.31 x 10(-36)T(6.45)e((-15465.8/)(T)), respectively.     

Potential energy surfaces for all-trans P5H6(+) and P5Me6(+) may be less complicated than anticipated

Burford and co-workers recently (2007) investigated the synthesis, structure, and pseudorotation of a family of cyclotetraphosphinophosphonium ions comprehensively. We now report theoretical computations through the CCSD(T) level to study the conformations of the parent model rings, P5H6(+) and P5Me6(+). The all-trans conformations on the full pseudorotational cycle for the cyclotetraphosphinophosphonium cation (P5H6(+)) and for its methyl-substituted derivative (P5Me6(+)) were located systematically on their potential energy surfaces. The potential energy for the pseudorotational circuit of P5H6(+) is smooth and monotonic with only one minimum ((3)T4) and one maximum ((4)T3), but the analogous P5Me6(+) circuit has two minima. The P5H6(+) and P5Me6(+) potential surfaces appear to be qualitatively very different from that for the well investigated tetrahydrofuran. Since the (3)T4 form of P5H6(+)avoids unfavorable eclipsing PH-PH and lone pair-lone pair interactions, it is the global minimum among all possible P5H6(+) configurations and conformations.     

Diketopyrrolopyrrole‐based polymer nanowires: Control of chain conformation and nucleation

Understanding the nucleation process is very important in growing polymer nanowires as it plays a decisive role in determining the crystal structure and size distribution. Polymer chain conformation determines whether the polymer chains could assemble to nuclei or not. Here, chain conformation and the nucleation process were controlled to grow 3,6‐bis‐(thiophen‐2‐yl)‐N,N′‐bis(2‐decyl‐1‐tetradecyl)‐1,4‐dioxo‐pyrrolo[3,4‐c]pyrrole and thieno[3,2‐b]thiophene (DT‐PDBT‐TT) nanowires. We changed the conformation of DT‐PDBT‐TT in solution and controlled the nucleation process by using a main solvent:cosolvent system. The main solvent was a low boiling point good solvent, and the cosolvent was consisted of two high boiling point solvents with different solubility. In fact, the chain conformation in the pristine solution was changed by choosing different main solvents (with H‐bond, π–π or none interaction with the main chain) and temperatures. The absorption spectrum and TEM images showed that trichloro ethylene (TCE) was the best main solvent because it has H‐bond interaction with the polymer main chain and DT‐PDBT‐TT conformation in it approaching unimer coil conformation, which is beneficial to grow nanowires. Mixed o‐dichlorobenzene (ODCB) and anisole (AS) with different ratios were used to changing the solubility step by step to control nucleation process. Only when marginal cosolvent (ODCB:AS = 1:1) was added, could it decrease the nuclei number and avoided the aggregates simultaneously. As the main solvent evaporated slowly, the nucleation and growth happened, leading to the nanowires formation. The resulting nanowires were about 63 nm in width and one to two microns in length. The width of the DT‐PDBT‐TT structures suggests that the polymer chains are oriented along the fibril axis. Our results indicated that there are two requirements for the nanowire formation, (1) the polymer chain conformation should approach unimer coil; (2) the nucleation density should be optimized, not too much and no aggregation happened. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2018 , 56, 833–841     

Ruthenium complexes of substituted hydrazine: new solution- and solid-state binding modes

The methylhydrazine complex [Ru(NH(2)NHMe)(PyP)(2)]Cl(BPh(4)) (PyP=1-[2-(diphenylphosphino)ethyl]pyrazole) was synthesised by addition of methylhydrazine to the bimetallic complex [Ru(mu-Cl)(PyP)(2)](2)(BPh(4))(2). The methylhydrazine ligand of the ruthenium complex has two different binding modes: side-on (eta(2)-) when the complex is in the solid state and end-on (eta(1)-) when the complex is in solution. The solid-state structure of [Ru(PyP)(2)(NH(2)NHMe)]Cl(BPh(4)) was determined by X-ray crystallography. 2D NMR spectroscopic experiments with (15)N at natural abundance confirmed that in solution the methylhydrazine is bound to the metal centre by only the -NH(2) group and the ruthenium complex retains an octahedral conformation. Hydrazine complexes [RuCl(PyP)(2)(eta(1)-NH(2)NRR')]OSO(2)CF(3) (in which R=H, R'=Ph, R=R'=Me and NRR'=NC(5)H(10)) were formed in situ by the addition of phenylhydrazine, 1,1-dimethylhydrazine and N-aminopiperidine, respectively, to a solution of the bimetallic complex [Ru(mu-Cl)(PyP)(2)](2)(OSO(2)CF(3))(2) in dichloromethane. These substituted hydrazine complexes of ruthenium were shown to exist in an equilibrium mixture with the bimetallic starting material.     

Pressure-induced pseudorotation in crystalline pyrrolidine

Pressure of 1.14(3) GPa leads to the crystallization of a new β phase of pyrrolidine, where every second molecule pseudorotates to the CH(2)-off envelope conformation, energetically less favored than the NH-off envelope. The β phase is triclinic, space group P ?1, but it is isostructural with monoclinic phase α, where all molecules are in the N-off envelope conformation. The energy associated with the pseudorotation constitutes only about 5% of the total energy change. The energetically unfavorable axial N-H position is retained.     

Yttrium calix[4]arene complexes. Silylation and silylamine elimination reactions on model oxo surfaces

The synthesis and the spectroscopic and structural characterization of lower-rim-silylated and rare-earth-metalated calix[4]arenes are presented. Hexamethyldisilazane, HN(SiMe3)2, reacted in a selective manner with [p-tert-buttylcalix[4]arene]H4 (1) in refluxing mesitylene to give the 1,3-silylated product [p-tert-butylcalix[4]arene(SiMe3)2]H2 (2) in high yield. The molecular structure of compound 2, as revealed by X-ray crystallography, shows the pinched cone conformation of the calixarene bowl, featuring hydrogen bonding between the phenylsilyl ether and phenolic oxygen atoms (O...O, 2.838 A). From the reaction of the sterically more crowded tetraphenyldimethyldisilazane, HN(SiMePh2)2, only starting material could be recovered. In contrast, tetramethyldisilazane, HN(SiHMe2)2, afforded the tetrakis-silylated product [p-tert-butylcalix[4]arene(SiHMe2)4] (3) in hexane solution at ambient temperature. A single-crystal X-ray diffraction study of compound 3 established the 1,2-alternate conformation, which is also present in solution, as indicated by 1H NMR spectroscopy. The yttrium complex Y[N(SiHMe2)2]3(THF)2 (4) exchanged all of its silylamide ligands when treated with an equimolar amount of 1 in toluene at ambient temperature to yield compound 5, as indicated by IR and NMR spectroscopy. The molecular structure of 5 revealed a centrosymmetric dimer of composition [Y(p-tert-butylcalix[4]arene(SiHMe2)(THF)]2. Three of the deprotonated phenolic oxygen atoms of the calixarene bowl bind to the metal center, two as terminal ligands and one in a bridging mode, while the fourth undergoes in situ silylation (nu(SiH) 2127 cm-1). The distorted-trigonal-bipyramidal coordination geometry is completed by a THF molecule. Bis-silylated 2 reacted with 4 to form the heteroleptic complex (Y[p-tert-butylcalix[4]arene(SiMe3)2][N(SiHMe2)2]) (6). Crystal data: C50H72O4Si2 (2), triclinic, P1, a = 12.8914(3) A, b = 14.9270(5) A, c = 15.1652(4) A, alpha = 77.293(2) degrees, beta = 65.019(2) degrees, gamma = 72.234(2) degrees, Z = 2; C52H80O4Si4 (3), triclinic, P1, a = 10.1774(2) A, b = 14.1680(2) A, c = 18.7206(2) A, alpha = 95.8195(8) degrees, beta = 95.5294(8) degrees, gamma = 98.1098(7) degrees, Z = 2; C100H132O10Si2Y2, 2(C6H6) (5), triclinic, P1, a = 13.2625(4) A, b = 14.5894(3) A, c = 17.0458(5) A, alpha = 65.0986(14) degrees, beta = 77.8786(8) degrees, gamma = 85.5125(13) degrees, Z = 1.     

Soluble yttrium chalcogenides: syntheses,structures, and NMR properties of Y[eta 3-N(SPPh2)2]3 and Y[eta 2-N(SePPh2)2]2[eta 3-N(SePPh2)2

The compounds Y[N(QPPh2)2]3 (Q = S (1), Se (2)) have been synthesized in good yield from the protonolysis reactions between Y[N(SiMe3)2]3 and HN(QPPh2)2 in methylene chloride (CH2Cl2). The compounds are not isostructural. In 1, the Y atom is surrounded by three similar [N(SPPh2)2]- ligands bound eta 3 through two S atoms and an N atom. The molecule possesses D3 symmetry, as determined in the solid state by X-ray crystallography and in solution by 89Y and 31P NMR spectroscopies. In 2, the Y atom is surrounded again by three [N(SePPh2)2]- ligands, but two are bound eta 2 through the two Se atoms and the other ligand is bound eta 3 through the two Se atoms and an N atom. Although a fluxional process is detected in the 31P and 77Se NMR spectra, a triplet is found in the 89Y NMR spectrum of 2 (delta = 436 ppm relative to YCl3 in D2O, 2JY-P = 5 Hz). This implies that on average the conformation of one eta 3- and two eta 2-bound ligands is retained in solution. Crystallographic data for 1: C72H60N3P6S6Y, rhombohedral, R3c, a = 14.927(5) A, c = 56.047(13) A, V = 10815(6) A3, T = 153 K, Z = 6, and R1(F) = 0.042 for the 1451 reflections with I > 2 sigma(I). Crystallographic data for 2: C72H60N3P6Se6Y.Ch2-Cl2, monoclinic, P2(1)n, a = 13.3511(17) A, b = 38.539(7) A, c = 14.108(2) A, beta = 94.085(13) degrees, V = 7241(2) A 3, T = 153 K, Z = 4, and R1(F) = 0.037 for the 8868 reflections with I > 2 sigma(I).     

High thermodynamic stability and extraordinary kinetic inertness of copper(II) complexes with 1,4,8,11-tetraazacyclotetradecane-1,8-bis(methylphosphonic acid): example of a rare isomerism between kinetically inert penta- and hexacoordinated copper(II) complexes

In an aqueous solution at room temperature, 1,4,8,11-tetraazacyclotetradecane-1,8-bis(methylphosphonic acid) (H(4)L(1)) and Cu(I) (I) form a pentacoordinated (pc) complex, pc-[Cu(L(1))](2-), exhibiting conformation I of the cyclam ring. At high temperature, the complex isomerises to a hexacoordinated isomer, trans-O,O-[Cu(L(1))](2-), with a trans-III conformation of the cyclam ring. In pc-[Cu(L(1))](2-), four ring nitrogen atoms and one phosphonate oxygen atom are arranged around Cu(I) (I) in a structure that is half-way between a trigonal bipyramid and a tetragonal pyramid, with one phosphonic acid group uncoordinated. In the trans-O,O-[Cu(L(1))](2-) isomer, the nitrogen atoms form a plane and the phosphonic acid groups are in a mutually trans configuration. A structurally very similar ligand, 4-methyl-1,4,8,11-tetraazacyclotetradecane-1,8-bis(methylphosphonic acid) (H(4)L(2)), forms an analogous pentacoordinated complex, pc-[Cu(L(2))](2-), at room temperature. However, the complex does not isomerise to the octahedral complex analogous to trans-O,O-[Cu(L(1))](2-). Because of the high thermodynamic stability of pc-[Cu(L(1))](2-), (logbeta=25.40(4), 25 degrees C, I=0.1 mol dm(-3) KNO(3)) and the formation of protonated species, Cu(I) (I) is fully complexed in acidic solution (-log [H(+)] approximately 3). Acid-assisted decomplexation of both of the isomers of [Cu(H(2)L(1))] takes place only after protonation of both uncoordinated oxygen atoms of each phosphonate moiety and at least one nitrogen atom of the cycle. The exceptional kinetic inertness of both isomers is illustrated by their half-lives tau(1/2)=19.7 min for pc-[Cu(H(2)L(1))] and tau(1/2) about seven months for trans-O,O-[Cu(H(2)L(1))] for decomplexation in 5 M HClO(4) at 25 degrees C. The mechanism of formation of pc-[Cu(L(1))](2-) is similar to those observed for other macrocyclic complexes.     

Templating Schiff-base lateral macrobicycles: an experimental and theoretical structural study of the intermediates

In this paper, we report a structural study both in the solid state and in solution of barium complexes with the diamine N,N'-bis(2-aminobenzyl)-4,13-diaza-18-crown-6 (L(2)), that allows us to rationalize the template effect of the metal ion in the synthesis of Schiff-base lateral macrobicycles resulting from the condensation of L(2) with different dicarbonyl compounds. The X-ray crystal structures of [Ba(L(2))(ClO(4))](ClO(4)) (3) [triclinic space group P1 with Z = 2, a = 10.467(2) A, b = 10.4755(2) A, c = 16.9911(3) A, alpha = 85.075(1) degrees, beta = 80.907(1) degrees, and gamma = 61.627(4) degrees ] and [Ba(L(2))(NCS)(H(2)O)](SCN) (4) [monoclinic space group P2(1)/n with Z = 4, a = 9.954(5) A, b = 29.193(5) A, c = 11.313(5) A, and beta = 91.371(5) degrees ] demonstrate that in the solid state the barium(II) ion induces an anti conformation of the receptor in the complexes. Variable temperature (1)H and (13)C NMR data point out that in solution compounds 3 and 4 exist as a mixture of syn and anti isomers. The presence of the syn isomer in solution, independent of the counterion employed (perchlorate or thiocyanate), accounts for the effectiveness of the barium(II) ion as a template agent in the synthesis of the lateral macrobicycles resulting from the condensation of L(2) with different dicarbonyl compounds. Density functional theory calculations (at the B3LYP/LanL2DZ level) for [Ba(L(2))](2+) predict the syn conformation to be more stable both in vacuo and in solution (PCM model). In order to asses which of the two isomers predominates in acetonitrile solution, the (13)C NMR shielding tensors of the two isomers of [Ba(L(2))](2+) were calculated for the in vacuo optimized structures by using the GIAO method, and the results were compared with the experimental ones. According to these analyses, a syn stereochemistry is assigned to the major species in solution.