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1.
Carbon and oxygen near-edge X-ray absorption fine structure (NEXAFS) spectra of 1,4-cyclohexadiene, p-benzoquinone, norbornadiene, norbornadienone, and cis-cis-[4,4,2]propella-3,8-diene-11,12-dione were calculated by means of Hartree-Fock and hybrid density functional theory using the static-exchange (STEX) approximation. The NEXAFS spectra are used as a probe to identify weak molecular interactions between the two non-conjugated ethylenic pi* orbitals present in these molecules. We show that the X-ray absorption spectrum of 1,4-cyclohexadiene exhibits some particular spectral structures in the discrete energy region that evidence diene through-bond orbital interaction, whereas absorption peaks are identified in the norbornadiene and norbornadienone spectra that indicate effective through-space orbital interactions. The molecular structure of the cis-cis-[4,4,2]propella-3,8-diene-11,12-dione isomer is such that the indirect through-bond or through-space diene orbital interactions are too weak to be assigned by its C1s NEXAFS spectrum.  相似文献   

2.
Near edge x-ray absorption fine structure (NEXAFS) spectroscopy is used to study the orientation of pentacene molecules within thin films on SiO2 for thicknesses ranging from monolayers to the bulk (150 nm). The spectra exhibit a strong polarization dependence of the pi* orbitals for all films, which indicates that the pentacene molecules are highly oriented. At all film thicknesses the orientation varies with the rate at which pentacene molecules are deposited, with faster rates favoring a thin film phase with different tilt angles and slower rates leading to a more bulklike orientation. Our NEXAFS results extend previous structural observations to the monolayer regime and to lower deposition rates. The NEXAFS results match crystallographic data if a finite distribution of the molecular orientations is included. Damage to the molecules by hot electrons from soft x-ray irradiation eliminates the splitting between nonequivalent pi* orbitals, indicating a breakup of the pentacene molecule.  相似文献   

3.
Theoretical C 1s near edge x-ray absorption fine structure (NEXAFS) spectra for the C(9)H(10) isomers trans-methylstyrene, alpha-methylstyrene, and allylbenzene in gas phase and adsorbed at Cu(111) surfaces have been obtained from density functional theory calculations where adsorbate geometries were determined by corresponding total energy optimizations. The three species show characteristic differences in widths and peak shapes of the lowest C 1s-->pi(*) transitions which are explained by different coupling of the pi-electron system of the C(6) ring with that of the side chain in the molecules as well as by the existence of nonequivalent carbon centers. The adsorbed molecules bind only weakly with the substrate which makes the use of theoretical NEXAFS spectra of the oriented free molecules meaningful for an interpretation of experimental angle-resolved NEXAFS spectra of the adsorbate systems obtained in this work. However, a detailed quantitative account of relative peak intensities requires theoretical angle-resolved NEXAFS spectra of the complete adsorbate systems which have been evaluated within the surface cluster approach. The comparison with experiment yields almost perfect agreement and confirms the reliability of the calculated equilibrium geometries of the adsorbates. This can help to explain observed differences in the catalytic epoxidation of the three molecules on Cu(111) based on purely geometric considerations.  相似文献   

4.
The gas-phase electron transmission (ET) and dissociative electron attachment (DEA) spectra are reported for the series of (bromoalkyl)benzenes C6H5(CH2)nBr (n = 0-3), where the bromine atom is directly bonded to a benzene ring or separated from it by 1-3 CH2 groups, and the dihalo derivative 1-Br-4-Cl-benzene. The relative DEA cross sections (essentially due to the Br- fragment) are reported, and the absolute cross sections are also evaluated. HF/6-31G and B3LYP/6-31G* calculations are employed to evaluate the virtual orbital energies (VOEs) for the optimized geometries of the neutral state molecules. The pi* VOEs, scaled with empirical equations, satisfactorily reproduce the corresponding experimental vertical electron attachment energies (VAEs). According to the calculated localization properties, the LUMO (as well as the singly occupied MO of the lowest lying anion state) of C6H5(CH2)3Br is largely localized on both the benzene ring and the C-Br bond, despite only a small pi*/sigma*C-Br interaction and in contrast to the chlorine analogue where the LUMO is predicted to possess essentially ring pi character. This would imply a less important role of intramolecular electron transfer in the bromo derivative for production of the halogen negative fragment through dissociation of the first resonant state. The VAEs calculated as the anion/neutral energy difference with the 6-31+G* basis set which includes diffuse functions are relatively close to the experimental values but do not parallel their sequence. In addition the SOMO of some compounds is not described as a valence MO with large pi* character but as a diffuse sigma* MO.  相似文献   

5.
The energies of the lowest-lying anion states of phenyl (C6H5N=C=O) and benzyl (C6H5CH2N=C=O) isocyanates have been determined experimentally in the gas phase for the first time using electron transmission spectroscopy (ETS), and their localization properties have been evaluated using HF/6-31G, MP2/6-31G*, and B3LYP/6-31G* calculations. The lowest-lying anion state of phenyl isocyanate, mainly of benzene ring character but with some contribution also from the N=C=O pi-system, lies at significantly higher energy than that of other benzenes substituted by pi-functionals, such as benzaldehyde or styrene. The scaling with the use of suitable empirical equations of the virtual orbital energies (VOEs) for orbitals with predominantly pi*(ring) character calculated for the neutral-state molecules leads to vertical attachment energies (VAEs) which closely correspond to those determined experimentally, whereas those calculated for the predominantly pi*(CO) and pi*(NC) orbitals (3rd and 4th LUMO, respectively) are significantly different from the corresponding measured values notwithstanding the fact that the calculations reproduce the shortening of the N=C and C=O double bonds.  相似文献   

6.
Core level X-ray photoemission spectra (XPS) and near edge X-ray absorption fine structure (NEXAFS) spectra of alanine and threonine in the gas phase have been measured at the carbon, nitrogen, and oxygen K edges and interpreted in the light of theoretical calculations. For the computations, a set of approximations is made which allows sufficiently accurate calculations of several conformers to be performed in reasonable computing time. The accuracy has been checked by comparing results obtained for proline to our previous, higher level calculations. The photoemission spectra at the carbon and oxygen edges are assigned and compared. The nitrogen 1s photoemission peaks show anomalous broadening which we relate to the populations and types of conformers. The carbon K-edge NEXAFS spectra of alanine and threonine are compared with our previous data on glycine and resonances assigned accordingly. The nitrogen K-edge NEXAFS spectra of alanine and threonine do not show measurable effects due to the population of conformers, in contrast to the photoemission results. At the oxygen K edge, the spectra of these amino acids are similar with two prominent peaks assigned to transitions of O 1s electrons from the oxo and hydroxyl groups to vacant pi* and sigma* orbitals and additional intensity for threonine due to the second OH group. Conformer effects are observable in photoemission but appear to be more difficult to resolve in photoabsorption. We explain this by energetic shifts of opposite sign for the core hole states and unoccupied orbitals, which causes partial cancelation in NEXAFS but not in photoemission.  相似文献   

7.
The electron transmission and dissociative electron attachment spectra of the 1-chloroalkyl benzene derivatives, C(6)H(5)(CH(2))(3)Cl and C(6)H(5)(CH(2))(4)Cl, and of the sulfur and silicon derivatives, C(6)H(5)SCH(2)Cl, C(6)H(5)Si(CH(3))(2)CH(2)Cl and C(6)H(5)CH(2)Si(CH(3))(2)CH(2)Cl, are presented for the first time. The relative Cl(-) fragment anion currents generated by electron attachment to the benzene pi* LUMO are measured in the series C(6)H(5)(CH(2))(n)Cl, with n = 1-4, and in the heteroatomic compounds. The Cl(-) yield reflects the rate of intramolecular electron transfer between the pi-system and the remote chlorine atom, which in turn depends on the extent of through-bond coupling between the localized pi* and sigma*(Cl-C) orbitals. In compounds C(6)H(5)(CH(2))(n)Cl the Cl(-) current rapidly decreases with increasing length of the saturated chain. This decrease is significantly attenuated when a carbon atom of the alkyl skeleton is replaced with a third-row heteroatom. This greater ability to promote through-bond coupling between the pi* and sigma*(Cl-C) orbitals is attributed to the sizably lower energy of the empty sigma*(S-C) and sigma*(Si-C) orbitals with respect to the sigma*(C-C) orbitals. In the sulfur derivative the increase of the Cl(-) current is larger than in the silicon analogue. In this case, however, other negative fragments are observed, due to dissociation of the S-C bonds.  相似文献   

8.
The C K-edge photoabsorption and 1s core-level photoemission of pentacene (C22H14) free molecules are experimentally measured, and calculated by self-consistent-field and static-exchange approximation ab initio methods. Six nonequivalent C atoms present in the molecule contribute to the C 1s photoemission spectrum. The complex near-edge structures of the carbon K-edge absorption spectrum present two main groups of discrete transitions between 283 and 288 eV photon energy, due to absorption to pi* virtual orbitals, and broader structures at higher energy, involving sigma* virtual orbitals. The sharp absorption structures to the pi* empty orbitals lay well below the thresholds for the C 1s ionizations, caused by strong excitonic and localization effects. We can definitely explain the C K-edge absorption spectrum as due to both final (virtual) and initial (core) orbital effects, mainly involving excitations to the two lowest-unoccupied molecular orbitals of pi* symmetry, from the six chemically shifted C 1s core orbitals.  相似文献   

9.
The response of a molecule to an applied external magnetic field can be evaluated by a graphical representation of the induced magnetic field. We have applied this technique to four representative, cyclic organic molecules, that is, to aromatic (C(6)H(6), D(6h)), anti-aromatic (C(4)H(4), D(2h)) and non-aromatic (C(4)H(8), D(4h), and C(6)H(12), D(3d)) molecules. The results show that molecules that contain a pi system possess a long-range magnetic response, while the induced magnetic field is short-range for molecules without pi systems. The induced magnetic field of aromatic molecules shields the external field. In contrast, the anti-aromatic molecules increase the applied field inside the ring. Aromatic, anti-aromatic, and non-aromatic molecules can be characterized by the appearance of the magnetic response. We also show that the magnetic response is directly connected to nucleus-independent chemical shifts (NICS).  相似文献   

10.
Recently we reported noncovalent functionalization of nanotubes in an aqueous medium with ionic liquid-based surfactants, 1-dodecyl-3-methylimidazolium bromide (1) and 1-(12-mercaptododecyl)-3-methylimidazolium bromide (2), resulting in positively charged single-wall carbon nanotube (SWNT)-1,2 composites. Thiolation of SWNTs with 2 provides their self-assembly on gold as well as templating gold nanoparticles on SWNT sidewalls via a covalent -S-Au bond. In this investigation, we studied the electronic structure, intermolecular interactions, and packing within noncovalently thiolated SWNTs and also nanotube alignment in the bulk of SWNT-2 dried droplets and self-assembled submonolayers (SAMs) on gold by high-resolution X-ray photoemission spectroscopy (HRXPS), C K-edge X-ray absorption fine structure (NEXAFS) spectroscopy, and polarization-modulated infrared reflection-absorption spectroscopy (PM-IRRAS). HRXPS data confirmed the noncovalent nature of interactions within the nanocomposite of thiolated nanotubes. In PM-IRRAS spectra of SWNT SAMs on gold, the IR-active vibrational SWNT modes have been observed and identified. According to PM-IRRAS data, the hydrocarbon chains of 2 are oriented with less tilt angle to the bare gold normal in a SAM deposited from an SWNT-2 dispersion than those of 1 deposited from an SWNT-1 dispersion on the mercaptoethanesulfonic acid-primed gold. For both the dried SWNT-2 bulk and the SWNT-2 SAM on gold, the C K-edge NEXAFS spectra revealed the presence of CH-pi interactions between hydrocarbon chains of 2 and the pi electronic nanotube structure due to the highly resolved vibronic fine structure of carbon 1s --> R*/sigma*C-H series of states in the alkyl chain of 2. For the SWNT-2 bulk, the observed splitting and upshift of the SWNT pi* orbitals in the NEXAFS spectrum indicated the presence of pi-pi interactions. In the NEXAFS spectrum of the SWNT-2 SAM on gold, the upshifted values of the photon energy for R*/sigma*C-H transitions indicated close contact of 2 with nanotubes and with a gold surface. The angle-dependent NEXAFS for the SWNT-2 bulk showed that most of the molecules of 2 are aligned along the nanotubes, which are self-organized with orientation parallel to the substrate plane, whereas the NEXAFS for the SWNT-2 SAM revealed a more normal orientation of functionality 2 on gold compared with that in the SWNT-2 bulk.  相似文献   

11.
Near-edge x-ray-absorption fine structure (NEXAFS) spectroscopy was adopted to probe the unoccupied electronic states of C60 anchored onto an organized assembly of 11-amino-1-undecane thiol on Au(111). The polarization dependence of the intensity of pi* resonance associated with C60 pi network revealed the self-assembled monolayer (SAM) system to be oriented with an average molecular tilt angle of 57 degrees with respect to the surface normal. Invoking the absence of solid-state band dispersion effects and in comparison to solid C60 and /or 1-ML C60/Au(111), the electronic structure of the resulting assembly was found dominated by spectral position shift and linewidth and intensity changes of the lowest unoccupied molecular orbital (LUMO), LUMO+1, and LUMO+2 orbitals. The latter implied hybridization between N Pz of -NH2 group of thiolate SAM and pi levels of C60, resulting in a nucleophilic addition with a change in the symmetry of C60 from Ih to C1 in the SAM. Occurrence of a new feature at 285.3 eV in the NEXAFS spectrum, assigned previously to pi* graphitic LUMO, signified the formation of aggregated clusters, (C60)n of C60 monomer. Low tunneling current scanning tunneling microscopy confirmed them to be spherical and stable aggregates with n approximately 5.  相似文献   

12.
Infrared reflection absorption spectroscopy (IRRAS) of the highly symmetric molecules C2H4 and C2H6 adsorbed as mono- and multilayers onto copper films is studied in relation to the type of metal-film roughness. Spectra of C2H4 show Raman lines on cold-deposited Cu films but not on Cu deposited at room temperature. For C2H6, the IR spectra from both types of metal films are similar; the surface infrared selection rule holds and no Raman bands are observed. The Raman lines that appear in the IR spectra already at low exposures are attributed to species adsorbed at special defect sites, identical to the so-called active sites in surface enhanced Raman scattering (SERS). The IR excitation mechanism by transient electron transfer to the adsorbate pi* state can deliver a discrete vibrational band of a Raman-active vibration only under certain circumstances, for example, for adsorbates at the "SERS-active sites". C2H6 at these sites cannot deliver Raman bands in IRRAS, because it has no pi* state. We also discuss IRRAS measurements on Cu(111) and Cu(110) single crystals, where Raman bands of C2H4 have been observed.  相似文献   

13.
H(D) Rydberg atom photofragment translational spectroscopy has been used to investigate the dynamics of H(D) atom loss C6H5SH(C6H5SD) following excitation at many wavelengths lambda phot in the range of 225-290 nm. The C6H5S cofragments are formed in both their ground (X(2)B1) and first excited ((2)B2) electronic states, in a distribution of vibrational levels that spreads and shifts to higher internal energies as lambda(phot) is reduced. Excitation at lambda(phot) > 275 nm populates levels of the first (1)pi pi* state, which decay by tunnelling to the dissociative (1)pi sigma* state potential energy surface (PES). S-H torsional motion is identified as a coupling mode facilitating population transfer at the conical intersection (CI) between the diabatic (1)pi pi* and (1)pi sigma* PESs. At shorter lambda(phot), the (1)pi sigma* state is deduced to be populated either directly or by efficient vibronic coupling from higher (1)pipi* states. Flux evolving on the (1)pi sigma* PES samples a second CI, at longer R(S-H), between the diabatic (1)pi sigma* and ground ((1)pi pi) PESs, where the electronic branching between ground and excited state C6H5S fragments is determined. The C6H5S(X(2)B1) and C6H5S((2)B2) products are deduced to be formed in levels with, respectively, a' and a' vibrational symmetry-behavior that reflects both Franck-Condon effects (both in the initial photoexcitation step and in the subsequent in-plane forces acting during dissociation) and the effects of the out-of-plane coupling mode(s), nu11 and nu16a, at the (1)pi sigma*/(1)pi pi CI. The vibrational state assignments enabled by the high-energy resolution of the present data allow new and improved estimations of the bond dissociation energies, D0(C6H5S-H) < or = 28,030 +/- 100 cm(-1) and D0(C6H5S-D) < or = 28,610 +/- 100 cm(-1), and of the energy separation between the X(2)B1 and (2)B2 states of the C6H5S radical, T(00) = 2800 +/- 40 cm(-1). Similarities, and differences, between the measured energy disposals accompanying UV photoinduced X-H (X = S, O) bond fission in thiophenol and phenol are discussed.  相似文献   

14.
Single-walled nanotubes (SWNTs) produced by plasma laser vaporization (PLV) and containing oxidized surface functional groups have been studied for the first time with NEXAFS. Comparisons are made to SWNTs made by catalytic synthesis over Fe particles in high-pressure CO, called HiPco material. The results indicate that the acid purification and cutting of single-walled nanotubes with either HNO3/H2SO4 or H2O2/H2SO4 mixtures produces the oxidized groups (O/C = 5.5-6.7%), which exhibit both pi*(CO) and sigma*(CO) C K-edge NEXAFS resonances. This indicates that both carbonyl (C=O) and ether C-O-C functionalities are present. Upon heating in a vacuum to 500-600 K, the pi*(CO) resonances are observed to decrease in intensity; on heating to 1073 K, the sigma*(CO) resonances disappear as the C-O-C functional groups are decomposed. Raman spectral measurements indicate that the basic tubular structure of the SWNTs is not perturbed by heating to 1073 K, based on the invariance of the ring breathing modes upon heating. The NEXAFS studies agree well with infrared studies which show that carboxylic acid groups are thermally destroyed first, followed by the more difficult destruction of ether and quinone groups. Single-walled nanotubes produced by the HiPco process, and not treated with oxidizing acids, exhibit an O/C ratio of 1.9% and do not exhibit either pi*(CO) or sigma*(CO) resonances at the detection limit of NEXAFS. It is shown that heating (to 1073 K) of the PLV-SWNTs containing the functional groups produces C K-edge NEXAFS spectra very similar to those seen for the HiPco material. The NEXAFS spectra are calibrated against spectra measured for a number of fused-ring aromatic hydrocarbon molecules containing various types of oxidized functional groups present on the oxidized SWNTs.  相似文献   

15.
The addition of thiols to ((t)BuO)(3)Mo[triple bond]N in toluene leads to the formation of (RS)(3)Mo[triple bond]N compounds as yellow, air-sensitive compounds, where R = (i)Pr and (t)Bu. The single-crystal structure of ((t)BuS)(3)Mo[triple bond]N reveals a weakly associated dimeric structure where two ((t)BuS)(3)Mo[triple bond]N units (Mo-N = 1.61 A, Mo-S = 2.31 A (av)) are linked via thiolate sulfur bridges with long 3.03 A (av) Mo-S interactions. Density functional theory calculations employing Gaussian 98 B3LYP (LANL2DZ for Mo and 6-31G* for N, O, S, and H) have been carried out for model compounds (HE)(3)Mo[triple bond]N and (HE)(3)MoNO, where E = O and S. A comparison of the structure and bonding within the related series ((t)BuE)(3)Mo[triple bond]N and ((t)BuE)(3)MoNO is made for E = O and S. In the thiolate compounds, the highest energy orbitals are sulfur lone-pair combinations. In the alkoxides, the HOMO is the N 2p lone-pair which has M-N sigma and M-O pi* character for the nitride. As a result of greater O p pi to Mo pi interactions, the M-N pi orbitals of the Mo-N triple bond are destabilized with respect to their thiolate counterpart. For the nitrosyl compounds, the greater O p pi to Mo d pi interaction favors greater back-bonding to the nitrosyl pi* orbitals for the alkoxides relative to the thiolates. The results of the calculations are correlated with the observed structural features and spectroscopic properties of the related alkoxide and thiolate compounds.  相似文献   

16.
The near edge X-ray absorption fine structure (NEXAFS) at the C K-edge of C2H2, C2H4, C2H6 on Cu(100) and Ag(100) surfaces is studied. The oriented character of the molecules on the surface combined to the dipole selection rules for photon absorption allows an experimental assignment of the nature of the various final states. A careful fitting of the NEXAFS spectra reveals final states of C–H character and shake-up satellites of the C(1 s) to π* (C–C) transition. The asymmetric line shape of the C(1 s) to σ* (C–C) transition is described in a scattering model of the photoelectron from the molecular potential.  相似文献   

17.
The adsorption of L-histidine on clean and oxygen-covered Cu(110) surfaces has been studied by soft X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. The valence band spectra, carbon, nitrogen and oxygen 1 s XPS and N K edge absorption spectra were measured for submonolayer, monolayer, and multilayer films. The spectra provide a detailed picture of the electronic structure and adsorption geometry at each coverage. In the monolayer, the histidine molecules are randomly oriented, in contrast to the submonolayer regime, where the molecules are coordinated to the copper surface with the imidazole functional group nearly parallel to, and strongly interacting with, the surface. The pi*/sigma* intensity ratio in NEXAFS spectra at the nitrogen edge varies strongly with angle, showing the imidazole ring is oriented. Adsorption models are proposed.  相似文献   

18.
The temporary anion states of isothiocyanates CH3CH2=C=S (and CH3CH2N=C=O for comparison), C6H5CH2N=C=S, and C6H5N=C=S are characterized experimentally in the gas phase for the first time by means of electron transmission spectroscopy (ETS). The measured vertical electron attachment energies (VAEs) are compared with the virtual orbital energies of the neutral-state molecules supplied by MP2 and B3LYP calculations with the 6-31G* basis set. The calculated energies, scaled with empirical equations, reproduce satisfactorily the experimental VAEs. The first VAE is also closely reproduced as the total energy difference between the anion and neutral states calculated at the B3LYP/6-31+G* level. Due to mixing between the ring and N=C=S pi-systems, C6H5N=C=S possesses the best electron-acceptor properties, and its lowest-lying anion state is largely localized at the benzene ring. The anion states with mainly pi*C=S and pi*N=C character lie at higher energy than the corresponding anion states of noncumulated pi-systems. However, the electron-acceptor properties of isothiocyanates are found to be notably larger than those of the corresponding oxygen analogues (isocyanates). The dissociative electron attachment (DEA) spectra show peaks close to zero energy and at 0.6 eV, essentially due to NCS- negative fragments. In spite of the energy proximity of the first anion state in phenyl isothiocyanate to the DEA peak, the zero-energy anion current in the benzyl derivative is about 1 order of magnitude larger.  相似文献   

19.
The carbon 1s near edge x-ray absorption fine structure (NEXAFS) spectra of simple gaseous alkane molecules differ from the spectra of the same alkane molecules in the condensed phase. The origin of these large, systematic differences is poorly understood. The NEXAFS spectra of gaseous alkanes are interpreted as a progression of core-->Rydberg transitions with distinctive vibronic structure. The interpretation of the NEXAFS spectra of condensed phase alkanes is varied. Specifically, the degree of Rydberg character in the pre-edge core excited states of condensed alkanes is controversial. We determined the character of core excited states in condensed alkanes with a combination of experiment and computational study. From this, we have determined the nature of matrix effects for these species. The high-resolution carbon 1s NEXAFS spectrum of gaseous neopentane is dramatically different from its condensed phase spectrum, a striking illustration of the dramatic spectroscopic changes that occur upon condensation. High quality ab initio calculations of a cluster designed to model the solid phase environment provide definitive evidence for the reduction of Rydberg character and support the assignment of sigma*C-H) valence character in the pre-edge features in the NEXAFS spectra of condensed alkanes.  相似文献   

20.
The double-aromatic character of selected monocyclic carbon, boron, and borocarbon rings is demonstrated by refined nucleus-independent chemical shift (NICS) analyses involving the contributions of individual canonical MOs and their out-of-plane NICS tensor component (CMO-NICS(zz)). The double aromaticity considered results from two mutually orthogonal Hückel p AO frameworks in a single molecule. The familiar pi orbitals are augmented by the in-plane delocalization of electrons occupying sets of radial (rad) p orbitals. Such double aromaticity is present in B(3) (-), C(6)H(3) (+), C(6) (4+), C(4)B(4) (4+), C(6), C(5)B(2), C(4)B(4), C(2)B(8), B(10) (2-), B(12), C(10), C(9)B(2), C(8)B(4), C(7)B(6), C(6)B(8), and C(14). Monocyclic C(8) and C(12) are doubly antiaromatic, as both the orthogonal pi and radial Hückel sets are paratropic. Planar C(7) and C(9) monocycles have mixed aromatic (pi) and antiaromatic (radial) systems.  相似文献   

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