Reversible photoregulation of binding of alpha-chymotrypsin to a gold surface

An ability to optically modulate the interactions of surfaces with functional biomolecules provides an important basis for generating new technologies including reversible biosensors, advanced medical implants, and biomolecular computers. Here we report the first example of reversible photoregulation of binding of a protease to a functional surface. A modular approach is presented with a surface-bound inhibitor containing a photoisomerizable azobenzene core to which is attached (i) appropriate protease binding functionality and (ii) a tether for surface attachment. The principle is demonstrated for alpha-chymotrypsin using a phenylalanine-based trifluoromethylketone inhibitor containing an azobenzene core and an alkyne-functionalized ethylene glycol tether, which is attached to the surface using click chemistry. UV/vis irradiation of the functional surface leads to a significant, reversible change in the amount of alpha-chymotrypsin that attaches to the surface, as measured by surface plasmon resonance.     

A femtosecond study of excitation wavelength dependence of solvation dynamics in a PEO-PPO-PEO triblock copolymer micelle

Excitation wavelength (lambdaex) dependence of solvation dynamics of coumarin 480 (C480) in the micellar core of a water soluble triblock copolymer, PEO20-PPO70-PEO20 (Pluronic P123), is studied by femtosecond and picosecond time resolved emission spectroscopies. In the P123 micelle, the width of the emission spectrum of C480 is found to be much larger than that in bulk water. This suggests that the P123 micelle is more heterogeneous than bulk water. The steady state emission maximum of C480 in P123 micelle shows a significant red edge excitation shift by 25 nm from 453 nm at lambdaex=345 nm to 478 nm at lambdaex=435 nm. The solvation dynamics in the interior of the triblock copolymer micelle is found to depend strongly on the excitation wavelength. The excitation wavelength dependence is ascribed to a wide distribution of locations of C480 molecules in the P123 micelle with two extreme environments-a bulklike peripheral region with very fast solvent response and a very slow core region. With increase in lambdaex, contribution of the bulklike region having an ultrafast component (< or =2 ps) increases from 7% at lambdaex=375 nm to 78% at lambda(ex)=425 nm while the contribution of the ultraslow component (4500 ps) decreases from 79% to 17%.     

Hydration layer of a cationic micelle, C(10)TAB: structure, rigidity, slow reorientation, hydrogen bond lifetime, and solvation dynamics

We report a theoretical study of the structure and dynamics of the water layer (the hydration layer) present at the surface of the cationic micelle decyltrimethylammonium bromide (DeTAB) by using atomistic molecular dynamics simulations. The simulated micelle consisted of 47 surfactant molecules (and an equal number of bromide ions), in good agreement with the pioneering light scattering experiments by Debye which found an aggregation number of 50. In this micelle, three partially positively charged methyl groups of each surfactant headgroup face the surrounding water. The nature of the cationic micellar surface is found to play an important role in determining the arrangement of water which is quite different from that in the bulk or on the surface of an anionic micelle, like cesium perfluorooctanoate. Water molecules present in the hydration layer are found to be preferentially distributed in the region between the three partially charged methyl headgroups. It is found that both the translational and rotational motions of water exhibit appreciably slower dynamics in the layer than those in the bulk. The solvation time correlation function (TCF) of bromide ions exhibits a long time component which is found to originate primarily from the interaction of the probe with the micellar headgroups. Thus, the decay of the solvation TCF is controlled largely by the residence time of the probe in the surface. The residence time distribution of the water molecules also exhibits a slow time component. We also calculate the collective number density fluctuation in the layer and find a prominent slow component compared to the similar quantity in the bulk. This slow component demonstrates that water structure in the hydration layer is more rigid than that in the bulk. These results demonstrate that the slow dynamics of hydration layer water is generic to macromolecular surfaces of either polarity.     

Electrolyte effect on mixed micelle and interfacial properties of binary mixtures of cationic and nonionic surfactants

In the present work, the adsorption behavior at the liquid-air interface and micellization characteristics of mixtures of cetyltrimethylammonium bromide (CTAB) and p-(1,1,3,3-tetramethylbutyl) polyoxyethylene (TritonX-100) in aqueous media containing different concentrations of NaBr were investigated by surface tension and potentiometry measurements. From plots of surface tension (gamma) as a function of solution composition and total surfactant concentration, we determined the critical micelle concentration (CMC), minimum surface tension at the CMC (gamma(CMC)), surface excess (Gamma(max)), and mean molecular surface area (A(min)). On the basis of regular solution theory, the compositions of the adsorbed film (Z) and micelles (X(M)) were estimated, and then the interaction parameters in the micelles (beta(M)) and in the adsorbed film phase (beta(sigma)) were calculated. For all mole fraction ratios, the results showed synergistically enhanced ability to form mixed micelles as well as surface tension reduction. Furthermore beta was calculated by considering nonrandom mixing and head group size effects. It was observed that, for both the planar air/aqueous interface and micellar systems, the nonideality decreased as the amount of electrolyte in the aqueous medium was increased. This was attributed to a decrease of the surface charge density caused by increasing the concentration of bromide ions.     

Ultrafast dynamics in a nanocage of enzymes: solvation and fluorescence resonance energy transfer in reverse micelles

In this contribution we report studies of the nature of solvation and resonance energy transfer processes in a reverse micelle (RM) upon encapsulation of a digestive enzyme, alpha-chymotrypsin (CHT). We have used one donor, Coumarin 500 (C500), and three acceptors Rhodamine 123 (R123, cationic), ethidium bromide (EtBr, cationic), and Merocyanine 540 (MC540, anionic). By selectively exciting the donor at the surface of the RM with a proper excitation wavelength we have examined solvation dynamics in the microenvironment. The solvation correlation function in the RM without CHT exhibits single-exponential decay with time constant approximately 660 ps, which is similar to that of the CHT-included RM. However, in the case of CHT-included RM (w(0)=10), the time-resolved anisotropy and spectral linewidth analysis of the surface-bound donor reveal the existence of an annular aqueous channel of thickness approximately 2.5 A between the enzyme surface and the inner surface of the RM. The aqueous channel is a potential host for the water-soluble substrate and also is involved in maintaining the proper functionality of RM encapsulated CHT. The studies use both steady-state and time-resolved fluorescence resonance energy transfer (FRET) techniques to measure donor-acceptor distances in the RM and also emphasize the danger of using steady-state fluorescence quenching as a method in careful estimation of the distances. The local geometrical restriction on the donor and acceptor molecules was estimated from time-resolved polarization (anisotropy) measurements. The time-resolved anisotropy of the donor and acceptor molecules also revealed significant randomization of the relative orientation of transition dipoles of the donor and acceptor, justifying the use of 2/3 as the value of the orientation factor kappa2. These studies attempt to elucidate the excellence of the RM as a nanohost of biological macromolecules.     

Ultrafast solvation dynamics of human serum albumin: correlations with conformational transitions and site-selected recognition

Human serum albumin, the most abundant protein found in blood plasma, transports a great variety of ligands in the circulatory system and undergoes reversible conformational transitions over a wide range of pH values. We report here our systematic studies of solvation dynamics and local rigidity in these conformations using a single intrinsic tryptophan (W214) residue as a local molecular probe. With femtosecond resolution, we observed a robust bimodal distribution of time scales for all conformational isomers. The initial solvation occurs in several picoseconds, representing the local librational/rotational motions, followed by the dynamics, in the tens to hundreds of picoseconds, which result from the more bonded water in the tryptophan crevice. Under the physiological condition of neutral pH, we measured approximately 100 ps for the decay of the solvation correlation function and observed a large wobbling motion at the binding site that is deeply buried in a crevice, revealing the softness of the binding pocket and the large plasticity of the native structure. At acidic pH, the albumin molecule transforms to an extended conformation with a large charge distribution at the surface, and a similar temporal behavior was observed. However, at the basic pH, the protein opens the crevice and tightens its globular structure, and we observed significantly faster dynamics, 25-45 ps. These changes in the solvation dynamics are correlated with the conformational transitions and related to their structural integrity.     

Ultrafast UV photon echo peak shift and fluorescence up conversion studies of non-polar solvation dynamics

We present photon echo peak shift and femtosecond fluorescence up-conversion studies of non-polar solvation dynamics of a simple non-polar dye p-terphenyl in ethanol and cyclohexane, using excitation in the UV range at 290 nm. The UV fluorescence up-conversion experiments were combined with a polychromatic detection and the results highlight the high sensitivity of this approach to fully characterize the excited state dynamics of the dye. We also demonstrate the feasibility of UV photon echo and transient grating and its sensitivity for the detection of non-polar solvation dynamics by measuring the frequency correlation function of the dye in the ground state. While solvation dynamics in the picosecond regime is observed in ethanol, electronic coherence dephasing occurs on timescales faster than 100 fs in ethanol as well as in the non-polar solvent cyclohexane.     

A surface science approach to ultrafast electron transfer and solvation dynamics at interfaces

Excess electrons in polar media, such as water or ice, are screened by reorientation of the surrounding molecular dipoles. This process of electron solvation is of vital importance for various fields of physical chemistry and biology as, for instance, in electrochemistry or photosynthesis. Generation of such excess electrons in bulk water involves either photoionization of solvent molecules or doping with e.g. alkali atoms, involving possibly perturbing interactions of the system with the parent-cation. Such effects are avoided when using a surface science approach to electron solvation: in the case of polar adsorbate layers on metal surfaces, the substrate acts as an electron source from where photoexcited carriers are injected into the adlayer. Besides the investigation of electron solvation at such interfaces, this approach allows for the investigation of heterogeneous electron transfer, as the excited solvated electron population continuously decays back to the metal substrate. In this manner, electron transfer and solvation processes are intimately connected at any polar adsorbate-metal interface. In this tutorial review, we discuss recent experiments on the ultrafast dynamics of photoinduced electron transfer and solvation processes at amorphous ice-metal interfaces. Femtosecond time-resolved two-photon photoelectron spectroscopy is employed as a direct probe of the electron dynamics, which enables the analysis of all elementary processes: the charge injection across the interface, the subsequent electron localization and solvation, and the dynamics of electron transfer back to the substrate. Using surface science techniques to grow and characterize various well-defined ice structures, we gain detailed insight into the correlation between adsorbate structure and electron solvation dynamics, the location (bulk versus surface) of the solvation site, and the role of the electronic structure of the underlying metal substrate on the electron transfer rate.     

Ultrafast relaxation dynamics of a biologically relevant probe dansyl at the micellar surface

We report picosecond-resolved measurement of the fluorescence of a well-known biologically relevant probe, dansyl chromophore at the surface of a cationic micelle (cetyltrimethylammonium bromide, CTAB). The dansyl chromophore has environmentally sensitive fluorescence quantum yields and emission maxima, along with large Stokes shift. In order to study the solvation dynamics of the micellar environment, we measured the fluorescence of dansyl chromophore attached to the micellar surface. The fluorescence transients were observed to decay (with time constant approximately 350 ps) in the blue end and rise with similar timescale in the red end, indicative of solvation dynamics of the environment. The solvation correlation function is measured to decay with time constant 338 ps, which is much slower than that of ordinary bulk water. Time-resolved anisotropy of the dansyl chromophore shows a bi-exponential decay with time constants 413 ps (23%) and 1.3 ns (77%), which is considerably slower than that in free solvents revealing the rigidity of the dansyl-micelle complex. Time-resolved area-normalized emission spectroscopic (TRANES) analysis of the time dependent emission spectra of the dansyl chromophore in the micellar environment shows an isoemissive point at 21066 cm-1. This indicates the fluorescence of the chromophore contains emission from two kinds of excited states namely locally excited state (prior to charge transfer) and charge transfer state. The nature of the solvation dynamics in the micellar environments is therefore explored from the time-resolved anisotropy measurement coupled with the TRANES analysis of the fluorescence transients. The time scale of the solvation is important for the mechanism of molecular recognition.     

Ultrafast electron transfer, localization and solvation at ice–metal interfaces: Correlation of structure and dynamics

The interaction of an excess electron with a polar molecular environment is well known as electron solvation. This process is characterized by an energetic stabilization and by changes of the electronic spatial extent due to screening of the localized charge through molecular rearrangement. At metal–ice interfaces we photo-inject delocalized electrons from the metal substrate into adsorbed ice layers and analyze the ultrafast dynamics of electron transfer, localization and solvation by femtosecond time- and angle-resolved two-photon photoemission spectroscopy. To acquire further understanding of the individual steps of the complex process we vary the interfacial structure. The substrate is changed between Cu(1 1 1) and Ru(0 0 1) and the electron dynamics in ice islands are compared to closed D₂O layers. Contrasting crystalline and amorphous ice we found that electron solvation is mediated through electron localization at favorable structural sites, which occurs very efficiently in amorphous ice, but is less likely in a crystalline layer. Next, we find that in an open ice structure like ice islands the energetic stabilization due to electron solvation proceeds at a rate of 1 eV/ps which is three times faster than in a closed ice layer. We attribute this behavior to differences in the molecular coordination, which determines the molecular mobility and, thus, the transfer rate of electronic energy to solvent modes. The substrate’s electronic structure, on the other hand, is important to understand the transfer rates from electrons in ice back to the metal. First experiments on trapped electrons in crystalline ice underline the potential to study electron solvation not only during the equilibration process, but also in quasi-static conditions, where we find that the stabilization continues, although at much weaker rates.     

Two-step stacking by sweeping and micelle to solvent stacking using a long-chain cationic ionic liquid surfactant

Coupling of long‐chain ionic liquid (LCIL)‐based sweeping and micelle to solvent stacking (MSS) in CZE for anionic compounds was proposed. N‐Cetyl‐N‐methylpyrrolidinium bromide (C₁₆MPYBr) was used as a novel cationic surfactant. The capillary column was conditioned with poly(1‐vinyl‐3‐butylimidazolium) bromide, a kind of polymeric ionic liquid, to obtain the anodic electroosmotic flow (EOF). There is a micellar solution (MS) zone which is prepared with C₁₆MPYBr before the sample zone. The micelles penetrated into the sample zone, swept and transported the analytes toward the micelle to solvent boundary (MSSB). Meanwhile, a sufficient amount of methanol in the background solution (BGS) resulted in the reversal of effective electrophoretic mobility of analytes and completed the MSS. Under optimal conditions, good linearity (0.9988–0.9999) was obtained for model analytes in a wide linear range with limits of detection (LODs) from 0.025 to 0.25 mg/L. The intraday and interday repeatabilities (%RSD, n=5, 10) were acceptable in the range from 2.12 to 7.29%. 34 and 25 times increases in peak area sensitivity for benzoic acid (BA) and 2‐nitrophenol (2‐NP) and 60 times increase in peak height sensitivity for 4‐chlorophenol (4‐CP) were obtained. The proposed method is applied to analyze two spiked environmental water samples obtaining satisfactory recoveries.     

Effect of solvation on ion binding to imidazole and methylimidazole

Quantum chemical [MP2(FULL)/6-311++G-(d,p)] calculations are done on the binding of hydrated Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+) metal ions with biologically relevant heteroaromatics such as imidazole and methylimidazole. The computed interaction energies are found to be in good agreement with the available experimental data. The effect of hydration on hydrogen bonding has been studied in detail and it shows that the hydrogen bond strength between H(2)O···H-N(1) substantially increases in the presence of metal ions. The present study quantifies the cooperativity between M···imidazole (M = Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+)) and N(1)-H···OH(2) interactions. Topological atoms in molecules (AIM) analysis and charge analysis support the variation in hydrogen-bonding strength and the variation in M···imidazole binding strength. Effect of hydration on N(1)-H stretching frequency is studied, and it shows a clear shift in the stretching frequency after sequential hydration of metal ion as well as the N(1) of imidazole. The present study provides a detailed account on the biologically important M-histidine motif interaction with metal ions, where histidine is modeled by imidazole and methylimidazole.     

Synthesis, characterization, and interfacial properties of an oligomeric, cationic fluorooxetane

The synthesis and characterization of a cationic oligo(fluorooxetane) surfactant with pendant -C4F9 groups are reported. Molecular area demand at saturation was determined to be 55.6 +/- 0.3 angstroms2/molecule and characteristic of an oligomer. The adsorption of the cationic oligo(fluorooxetane) to the air-water interface appears to be diffusion-limited, and dilational rheological properties of the adsorbed molecules are representative of a "soluble" monolayer. Adsorption dynamics have been measured yielding diffusion coefficients that are dependent on concentration and in the 10(-7)-10(-8) cm2/s range. Complex moduli from dilational interfacial rheological measurements as a function of oscillation frequency were well fitted to the Lucassen-van den Tempel equation, providing an estimate of the Gibbs elasticity. The combination of the oligomeric nature of the fluorosurfactant, short perfluoroalkyl chain and its interfacial properties suggests that this synthetic approach is an attractive route to the development of fluorinated surfactants that avoid the environmental concerns of small-molecule, long perfluoroalkyl-chain surfactants.     

Ultrafast to slow orientational dynamics of a homeotropically aligned nematic liquid crystal

The orientational dynamics of a homeotropically aligned nematic liquid crystal, 4'-pentyl-4-biphenylcarbonitrile (5-CB), is studied over more than six decades of time (500 fs to 2 mus) using optical heterodyne detected optical Kerr effect experiments. In contrast to the dynamics of nematogens in the isotropic phase, the data do not decay as a highly temperature-dependent exponential on the longest time scale, but rather, a temperature-independent power law spanning more than two decades of time, the final power law, is observed. On short time scales (approximately 3 ps to approximately 1 ns) another power law, the intermediate power law, is observed that is temperature dependent. The power law exponent of the correlation function associated with the intermediate power law displays a linear dependence on the change in the nematic order parameter with temperature. Between the intermediate power law and the final power law, there is a crossover region that displays an inflection point. The temperature-dependent orientational dynamics in the nematic phase are shown to be very different than those observed in the isotropic phase.     

Ultrafast vibrational dynamics and spectroscopy of a siloxane self-assembled monolayer

Time and frequency domain sum-frequency generation (SFG) were combined to study the dynamics and structure of self-assembled monolayers (SAMs) on a fused silica surface. SFG-free induction decay (SFG-FID) of octadecylsilane SAM in the CH stretching region shows a relatively long time scale oscillation that reveals that six vibrational modes are involved in the response of the system. Five of the modes have commonly been used for the fitting of SFG spectra in the CH stretching region, namely the symmetric stretch and Fermi resonance of the methyl group, the antisymmetric stretch of the methyl, as well as the symmetric and antisymmetric stretches of the methylene group. The assignment of the sixth mode to the terminal CH(2) group was confirmed by performing a density function theory calculation. The SFG-FID measures the vibrational dephasing time (T(2)) of each of the modes, including a specific CH(2) group within the SAM, the terminal CH(2), which had never been measured before. The relatively long (～1.3 ps) dephasing of the terminal CH(2) suggests that alkyl monolayer structure is close to that of the liquid condensed phase of Langmuir Blodgett films.     

Ultrafast photoinduced electron transfer in the micelle and the gel phase of a PEO-PPO-PEO triblock copolymer

Ultrafast photoinduced electron transfer (PET) from N,N-dimethylaniline (DMA) to coumarin dyes is studied in the micelle and the gel phase of a triblock copolymer, (PEO)(20)-(PPO)(70)-(PEO)(20) (Pluronic P123) by picosecond and femtosecond emission spectroscopies. The rate of PET in a P123 micelle and gel is found to be nonexponential and faster than the slow components of solvation dynamics. In a P123 micelle and gel, PET occurs on multiple time scales ranging from a subpicosecond time scale to a few nanoseconds. In the gel phase, the highest rate constant (9.3 x 10(9) M(-1) s(-1)) of ET for C152 is about two times higher than that (3.8 x 10(9) M(-1) s(-1)) observed in micelle phase. The ultrafast components of electron transfer (ET) exhibits a bell shaped dependence with the free energy change which is similar to the Marcus inversion. Possible reasons for slower PET in P123 micelle compared to other micelles and relative to P123 gel are discussed.     

Quantum theoretical study of electron solvation dynamics in ice layers on a Cu(111) surface

Recent experiments using time- and angle-resolved two-photon photoemission (2PPE) spectroscopy at metal/polar adsorbate interfaces succeeded in time-dependent analysis of the process of electron solvation. A fully quantum mechanical, two-dimensional simulation of this process, which explicitly includes laser excitation, is presented here, confirming the origin of characteristic features, such as the experimental observation of an apparently negative dispersion. The inference of the spatial extent of the localized electron states from the angular dependence of the 2PPE spectra has been found to be non-trivial and system-dependent.     

Novel electroactive surface functionality from the coupling of an aryl diamine to carbon black

The reaction of 1,2-diaminoanthraquinone with Vulcan XC72 carbon in 4 M HCl produces two distinct surface bound anthraquinone species, with formal potentials of ca. ?0.03 and ?0.19 V vs. SCE. The more positive couple is very stable to electrochemical cycling and has been assigned to the expected benzimidazole linkage. The other wave, which decays over hours of cycling is thought to be due to an amine linkage. This type of linkage also appears to be formed spontaneously when 1,2-diaminoanthraquinone is adsorbed onto Vulcan XC72 from methanol.