Formation of rectangular packing and one-dimensional lines of C60 on 11-phenoxyundecanethiol self-assembled monolayers on Au(111)

The behavior of C(60) molecules deposited onto 11-phenoxyundecanethiol (phenoxy) self-assembled monolayers (SAMs) is studied using ultrahigh vacuum scanning tunneling microscopy (UHV-STM) and spectroscopy. We observe that after thermally annealing between 350 and 400 K in vacuum a combination of hexagonally close-packed islands, rectangularly packed islands, and isolated single lines of C(60) is observed when the C(60) is initially deposited on an unannealed phenoxy SAM. However, only rectangularly packed islands are found when they are deposited on a preannealed phenoxy SAM. We determine the rectangular packing to have a (2√3 × 4) rectangular unit cell with respect to the underlying Au(111) substrate. This type of C(60) structure has not been observed previously for multicomponent self-assemblies on a surface. We discuss the possible causes for the formation of this structure as well as the differences between starting on an unannealed SAM and an annealed one. This study demonstrates the capability of functionalized alkanethiol SAMs to control the growth and structure of C(60) islands during annealing depending on the structural changes of the SAM itself; by preannealing the SAM, the motion of the C(60) can be confined and unique structures resulting from interactions between the SAM molecules and C(60) can be produced.     

Self-assembly of alkanols on Au(111) surfaces

Self-assembled monolayers (SAMs) of alkanols (1-C(N)H(2N+1)OH) with varying carbon-chain lengths (N = 10-30) have been systematically studied by means of scanning tunneling microscopy (STM) at the interfaces between alkanol solutions (or liquids) and Au(111) surfaces. The carbon skeletons were found to lie flat on the surfaces. This orientation is consistent with SAMs of alkanols on highly oriented pyrolytic graphite (HOPG) and MoS2 surfaces, and also with alkanes on reconstructed Au(111) surfaces. This result differs from a prior report, which claimed that 1-decanol molecules (N = 10) stood on their ends with the OH polar groups facing the gold substrate. Compared to alkanes, the replacement of one terminal CH3 group with an OH group introduces new bonding features for alkanols owing to the feasibility of forming hydrogen bonds. While SAMs of long-chain alkanols (N > 18) resemble those of alkanes, in which the aliphatic chains make a greater contribution, hydrogen bonding plays a more important role in the formation of SAMs of short-chain alkanols. Thus, in addition to the titled lamellar structure, a herringbone-like structure, seldom seen in SAMs of alkanes, is dominant in alkanol SAMs for values of N < 18. The odd-even effect present in alkane SAMs is also present in alkanol SAMs. Thus, the odd N alkanols (alkanols with an odd number of carbon atoms) adopt perpendicular lamellar structures owing to the favorable interactions of the CH3 terminal groups, similar to the result observed for odd alkanes. In contrast to alkanes on Au(111) surfaces, for which no SAMs on an unreconstructed gold substrate were observed, alkanols are capable of forming SAMs on either the reconstructed or the unreconstructed gold surfaces. Structural models for the packing of alkanol molecules on Au(111) surfaces have been proposed, which successfully explain these experimental observations.     

Complex orientational ordering of C60 molecules on Au(111)

The orientation and adsorption site for C(60) molecules on Au(111) has been studied using low temperature scanning tunneling microscopy. A complex orientational ordering has been observed for molecules inside the "in-phase" (R0°) domain. A 7-molecule cluster consisting a central molecule sitting atop of a gold atom and 6 tilted surrounding molecules is identified as the structural motif. The 2√3 × 2√3-R30° phase consists of molecules bonding to a gold atomic vacancies with a preferred azimuthal orientation. The quasi-periodic R14° phase is composed of groups of similarly oriented molecules with the groups organized into a 4√3 × 4√3-R30° like super-lattice unit cell.     

Formation of ordered self-assembled monolayers by adsorption of octylthiocyanates on Au(111)

Self-assembled monolayers (SAMs) were formed by the spontaneous adsorption of octythiocyanate (OTC) on Au(111) using both solution and ambient-pressure vapor deposition methods at room temperature and 50 degrees C. The surface structures and adsorption characteristics of the OTC SAMs on Au(111) were characterized by scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS). The STM observation showed that OTC SAMs formed in solution at room temperature have unique surface structures including the formation of ordered and disordered domains, vacancy islands, and structural defects. Moreover, we revealed for the first time that the adsorption of OTC on Au(111) in solution at 50 degrees C led to the formation of SAMs containing small ordered domains, whereas the SAMs formed by vapor deposition at 50 degrees C had long-range ordered domains, which can be described as (radical3 x 2 radical19)R5 degrees structures. XPS measurements of the peaks in the S 2p and N 1s regions for the OTC SAMs showed that vapor deposition is the more effective method as compared to solution deposition for obtaining high-quality SAMs by adsorption of OTC on gold. The results obtained will be very useful in understanding the SAM formation of organic thiocyanates on gold surfaces.     

Theoretical calculations of magnetic properties of the α-, β-, γ- and δ-phases of p-NPNN

Hybrid density functional theory (HDFT) calculations have been carried out for clusters of p-NPNN extracted from the experimental crystal structures of the α-, β-, γ- and δ-phases in order to investigate the weak magnetic interactions between the organic radicals theoretically. From the systematic HDFT calculations for β- and γ-phase p-NPNN clusters, it was found that the magnetic long-range ferromagnetic and antiferromagnetic orderings would be presented in the β- and γ-phase p-NPNN crystals, respectively.     

Low-temperature phase transitions in (C5H5NH)Ag5I6

The solid electrolyte (C₅H₅NH)Ag₅I₆ undergoes two low-temperature transitions, probably associated with the ordering of the pyridinium ions. The two phases are monoclinic and have structures closely related to that of the hexagonal phase at 240°K. The transition to the γ-phase at 230°K is second order, and that from the γ- to the δ-phase at 180°K, first order. In the γ-phase, the monoclinic a and b axes correspond to the orthohexagonal B and A axes, respectively; in the δ-phase, the correspondence is reversed. If the pyridinium ions order in the γ-phase, its space group is most probably Cc. If the pyridinium ions are ordered in the δ-phase, the N atoms must lie on twofold axes in $\text{C2}\text{c}$, but the space group Cc is also possible for this phase.     

Separations of a-hexachlorocyclohexane (a-HCH) and pentachlorocyclohexene (PCCH) enantiomers on a cyclodextrin-phase (Cyclodex-B) by HRGC/ECD

The separation of a-hexachlorocyclohexane and of all eight possible pentachlorocyclohexene isomers into their enantiomers by high-resolution gas chromatography and electron capture detection was achieved by using permethylated β-cyclodextrin in DB 1701 (Cyclodex-B, J & W) as chiral stationary phase. The first step in the metabolism of 1,2,3,4,5,6-hexachlorocyclohexane (HCH) is the formation of 1,3,4,5,6-pentachlorocyclohexene-1 (PCCH). Various degradation experiments were carried out with α-, β-, γ-, and δ-HCH. Whereas β-HCH gave no degradation products, the isomers α-, γ-, and δ-HCH degraded into various PCCHs and trichlorobenzenes, when using pyridine as dehydrochlorination reagent in xylene at 60°C. Isomerization into other HCH isomers was observed only for δ-HCH. Enantioselective dehydrochlorination was observed for a- and γ-HCH using the alkaloid (?)-brucine, R-(+)- or S-(?)-a-phenylethylamine as chiral base.     

Standing up versus looping over: controlling the geometry of self-assembled monolayers of α,ω-diynes on gold

It is shown that self-assembled monolayers (SAMs) composed of α,ω-diynes on gold have different structures depending on the concentration of molecules used to make the SAM. Evidence for both hairpinned and standing-up molecules is provided. This behavior is in contrast to SAMs of α,ω-dithiols on gold, which generally form SAMs with only the straight conformation. The looped SAMs composed of α,ω-diynes offer a less densely packed and thus somewhat accessible surface that may be useful when the underlying surface is used as an electrode. Furthermore, biasing the structure of the molecules in the SAM between looped and standing-up may be useful in the design of dynamic surfaces.     

An Experimental and Theoretical Approach to Investigate the Effect of Chain Length on Aminothiol Adsorption and Assembly on Gold

Despite the numerous studies on the self‐assembled monolayers (SAMs) of alkylthiols on gold, the mechanisms involved, especially the nature and influence of the thiol–gold interface are still under debate. In this work the adsorption of aminothiols on Au(111) surfaces has been studied by using surface IR and X‐ray photoelectron spectroscopy (XPS) as well as by density functional theory (DFT) modeling. Two aminothiols were used, cysteamine (CEA) and mercaptoundecylamine (MUAM), which contain two and eleven carbon atoms, respectively. By combining experimental and theoretical methods, it was possible to draw a molecular picture of the thiol–gold interface. The long‐chain aminothiol produced better ordered SAMs, but, interestingly, the XPS data showed different sulfur binding environments depending on the alkyl chain length; an additional peak at low binding energy was observed upon CEA adsorption, which indicates the presence of sulfur in a different environment. DFT modeling showed that the positions of the sulfur atoms in the SAMs on gold with similar unit cells [(2√3×2√3)R30°] depended on the length of the alkyl chain. Short‐chain alkylthiol SAMs were adsorbed more strongly than long‐chain thiol SAMs and were shown to induce surface reconstruction by extracting atoms from the surface, possibly forming adatom/vacancy combinations that lead to the additional XPS peak. In the case of short alkylthiols, the thiol–gold interface governs the layer, CEA adsorbs strongly, and the mechanism is closer to single‐molecule adsorption than self‐assembly, whereas for long chains, interactions between alkyl chains drive the system to self‐assembly, leading to a higher level of SAM organization and restricting the influence of the sulfur–gold interface.     

Surface structure and phase transition of K adsorption on Au(111): by ab initio atomistic thermodynamics

We studied the interactions between atomic potassium (K) and Au(111) at a range of coverage (i.e., Θ(K) = 0.11-0.5 monolayer (ML)) by ab initio atomic thermodynamics. For K on-surface adsorption, we found that K energetically favors the three-fold hollow sites (fcc or hcp), while the most significant surface rumpling was obtained at the atop sites. The incorporation of gold atoms in the adsorbate layer gradually becomes energetically favorable with increasing K coverage. We proposed a possible model with a stoichiometry of K(2)Au for the (2 × 2)-0.5 ML phase observed in lower energy electron diffraction (LEED): one K at atop site and the other K as well as one Au adatom at the second-nearest fcc/hcp and hcp/fcc, respectively. Clear theoretical evidences were given for the ionic interaction of K on Au surface. Additionally, phase transitions were predicted based on chemical potential equilibrium of K, largely in line with the earlier reported LEED observations: the clean surface → (√3 × √3)R30° → (2 × 2), and (2 × 2) → (√3 × √3)R30° reversely at an elevated temperature.     

Isobutanol dehydrogenation on copper-containing bismuth vanadates

It is found that α, β, and Γ modifications of perovskites Bi₄V_{2 ? 2x} Cu_2x O_{11 ? δ} (BICUVOX) exhibit different activities during catalytic transformations of isobutanol with a selectivity of isobutanal formation 85–100%. Data analysis shows that the site for the alcohol dehydrogenation reaction is the ion pair Cu²⁺-O^2? with the highest activity for a highly conductive γ-phase. It is shown that the activation energy for aldehyde formation is lower for γ-phase of the catalyst by a factor of ten than that for its α-phase. It is concluded that step-wise Arrhenius dependences without changes in the activation energy for parallel alcohol dehydrogenation and dehydration reactions are related to changes in the conducting properties of the catalyst. Step change in activity was found at temperatures of 310 and 370° and corresponds to an increase of the solid solution electric conductivity.     

Poly(ethylene glycol) monolayer formation and stability on gold and silicon nitride substrates

Poly(ethylene glycol) (PEG) self-assembled monolayers (SAMs) are extensively used to modify substrates to prevent nonspecific protein adsorption and to increase hydrophilicity. X-ray photoelectron spectroscopy analysis, complemented by water contact angle measurements, is employed to investigate the formation and stability upon aging and heating of PEG monolayers formed on gold and silicon nitride substrates. In particular, thiolated PEG monolayers on gold, with and without the addition of an undecylic spacer chain, and PEG monolayers formed with oxysilane precursors on silicon nitride have been probed. It is found that PEG-thiol SAMs are degraded after less than two weeks of exposure to air and when heated at temperatures as low as 120 degrees C. On the contrary, PEG-silane SAMs are stable for more than two weeks, and fewer molecules are desorbed even after two months of aging, compared to those desorbed in two weeks from the PEG-thiol SAMs. A strongly bound hydration layer is found on PEG-silane SAMs aged for two months. Heating PEG-silane SAMs to temperatures as high as 160 degrees C improves the quality of the monolayer, desorbing weakly bound contaminants. The differences in stability between PEG-thiol SAMs and PEG-silane SAMs are ascribed to the different types of bonding to the surface and to the fact that the thiol-Au bond can be easily oxidized, thus causing desorption of PEG molecules from the surface.     

硒杂环化合物(4,5-苯并苤硒脑)在金表面上的自组装

为了寻求新的自组装单分子膜体系,构建新的功能膜,研究了具备平面型的大环共轭硒杂环化合物-- 4,5-苯并苤硒脑(苯并[c]硒二唑,简称苤硒脑)在金表面的自组装单分子膜.通过X射线光电子能谱(XPS)和电化学手段对其进行表征.XPS研究结果表明,自组装形成单分子膜后,苤硒脑分子中Se3d结合能从57.4 eV下降到57.1 eV;表明硒杂环化合物是通过金硒键固定在金表面上的;电化学循环伏安法实验表明,金电极表面上自组装该有机硒后, Fe(CN)63-/4-的氧化还原峰几乎完全消失;以四硼酸钠为底液,测得该化合物自组装在金表面上时,其还原电位在-0.66 V,与在溶液中用裸金电极测得的还原峰电位基本一致.     

STM study of mixed alkanethiol/biphenylthiol self-assembled monolayers on Au(111)

A method is presented for depositing mixed self-assembled monolayers (SAMs) of dodecanethiol (C12) and 4'-methyl-1,1'-biphenyl-4-butane (H3C-C6H4-C6H4-(CH2)4-SH, BP4) by insertion of BP4 into a closely packed SAM of dodecanethiol on Au(111). Insertion takes place at defect sites such as domain boundaries or etch pits in the gold surface that are characteristic of C12 monolayers on gold. With a lower probability, insertion also occurs beside defect sites inside dodecanethiol domains. Insertion at defect sites results in domains of BP4, whereas insertion into C12 domains leads to isolated BP4 molecules. The isolated BP4 molecules are shown not to move at room temperature. By comparing the apparent height of the isolated BP4 molecules and BP4 domains, it is proposed that the isolated molecules have the same conformation as in the full-coverage phase. A simple two-layer model is proposed to characterize the current transport through BP4. The decay constant beta for the phenylene groups is deduced from the apparent STM heights of the inserted BP4 islands compared to the STM heights of the C12 closely packed monolayers.     

New dialkyldithiophosphinic acid self-assembled monolayers (SAMs): influence of gold substrate morphology on adsorbate binding and SAM structure

We report the fabrication and characterization of new self-assembled monolayers (SAMs) formed from dihexadecyldithiophosphinic acid [(C(16))(2)DTPA] molecules on gold substrates. In these SAMs, the ability of the (C(16))(2)DTPA headgroup to chelate to the gold surface depends on the morphology of the gold substrate. Gold substrates fabricated by electron-beam evaporation (As-Dep gold) consist of ～50-nm grains separated by deep grain boundaries (～10 nm). These grain boundaries inhibit the chelation of (C(16))(2)DTPA adsorbates to the surface, producing SAMs in which there is a mixture of monodentate and bidentate adsorbates. In contrast, gold substrates produced by template stripping (TS gold) consist of larger grains (～200-500 nm) with shallower grain boundaries (<2 nm). On these substrates, the low density of shallow grain boundaries allows (C(16))(2)DTPA molecules to chelate to the surface, producing SAMs in which all molecules are bidentate. The content of bidentate adsorbates in (C(16))(2)DTPA SAMs formed on As-Dep and TS gold substrates strongly affects the SAM properties: Alkyl chain organization, wettability, frictional response, barrier properties, thickness, and thermal stability all depend on whether a SAM has been formed on As-Dep or TS gold. This study demonstrates that substrate morphology has an important influence on the structure of SAMs formed from these chelating adsorbates.     

Hierarchical chiral framework based on a rigid adamantane tripod on Au(111)

We have investigated the tripod-shaped bromo adamantane trithiol (BATT) molecule on Au(111) using scanning tunneling microscopy (STM) at 4.7 K. Adsorption of BATT leads to formation of highly ordered self-assembled monolayers (SAMs) with three-point contacts on Au(111). The structure of these SAMs has been found to have a two-tiered hierarchical chiral organization. The self-assembly of achiral monomers produces chiral trimers, which then act as the building blocks for chiral hexagonal supermolecules. SAMs begin to form from the racemic mixture of assembled molecules in ribbon-shaped islands, followed by the transformation to enantiomeric domains when SAM layers develop two-dimensionally across hcp domains. Such a chiral phase transition at the two-dimensional domain can arise from a subtle balance between molecule-substrate and intermolecular interactions. Two structural factors, the S atom (stabilization) and the methylene groups (chirality) located just above the S atom, induce the chiral ordering of BATT on Au(111).     

Cyanato-Kupfer(II)-Komplexe mit organischen Liganden. XV. Verschiedene Koordinationen und Kristallformen der Cyanato-Kupfer(II)-Komplexe mit Urotropin

Cyanato-Copper(II) Complexes with Organic Ligands. XV. Various Coordinations and Crystal Forms of Cyanato-Copper(II) Complexes with Urotropine Four forms of the compound Cu(NCO)₂(urt) · 2 H₂O (α, β, γ, δ) and two forms of the compound Cu(NCO)₂(urt) (α, β) (urt = urotropine) were prepared and studied by X-ray powder technique, as well as by other physical methods. The obtained results indicate that in all the compounds Cu(II) atoms are bridged by bidentate urotropine molecules and bonded always with two nitrogen atoms of NCO groups. The γ- and δ-ihydrate show a pseudotetrahedral configuration, other compounds are five- or sixcoordinate owing to bridging function of NCO groups. Water in the dihydrates is hydrogen bonded in the crystal structure. The crystal structures of α- and β- like γ-and δ-ihydrates are very similar; the last two may be regarded as distortion isomers.     

Low-temperature adsorption of H2S on Ag(111)

H(2)S forms a rich variety of structures on Ag(111) at low temperature and submonolayer coverage. The molecules decorate step edges, exist as isolated entities on terraces, and aggregate into clusters and islands, under various conditions. One type of island exhibits a (√37×√37)R25.3° unit cell. Typically, molecules in the clusters and islands are separated by about 0.4 nm, the same as the S-S separation in crystalline H(2)S. Density functional theory indicates that hydrogen-bonded clusters contain two types of molecules. One is very similar to an isolated adsorbed H(2)S molecule, with both S-H bonds nearly parallel to the surface. The other has a S-H bond pointed toward the surface. The potential energy surface for adsorption and diffusion is very smooth.     

Effects of temperature and water on the γ → α crystalline transition of nylon 6 caused by stretching in the chain direction

The effects of temperature and water on the crystal transition of nylon 6 from the γ phase to the α phase, which is caused by stretching along the chain direction, were investigated. The γ-phase fibers with high crystallite orientation were stretched at constant load under various conditions. An inversion of the effect of water on the transition occurs at about ?60°C. Stretching in the wet state is more effective for the transition at higher temperature. In contrast, at low temperatures water in the crystalline regions actsasa cohesive agent for the chains and increases the activation energy for the transition. Thus, dry stretching is more effective than wet stretching at very low temperature. The fraction of transformed α-phase crystallites increases abruptly over a narrow range of stress. Thus the critical stress can be determined for the transition. The critical stress changes appreciably with temperature; the higher the temperature, the lower the critical stress. The relation between stretching temperature and critical stress was analyzed by Flory's equation for the shift of transition temperature by stress. About 220°C. was estimated as the zero-stress transition temperature. The heat content of the γ-phase crystal was estimated to be smaller by 500 cal./mole than that of the α-phase crystal. This result suggests that the free energy of the γ-phase crystal is lower than that of the α-phase crystal at temperatures lower than the transition point. The irreversible strain of a sample in which the crystal transition has taken place is very small at low temperature. This small extension of the sample is evidence that the γ → α transition produced by stretching along the chain axis is a crystal-crystal transition.     

Physical structure of standing-up aromatic SAMs revealed by scanning tunneling microscopy

Long-range-ordered aromatic SAMs are formed on Au(111) using 4-nitrophenyl sulfenyl chloride as a precursor. Although the main structure is a √3 × √3 with a molecular density similar to that usually found for aliphatic SAMs, particular spots presenting specific shapes are also observed by STM. These include hexagons, partial hexagons, parallelograms, and zigzags resulting from specific arrangements of adsorbed molecules. These molecular arrangements are reversible as they form and dissociate or "vanish" in various areas on the surface. STM shows that these particular structures provide some order to their surrounding because areas void of these structures look less ordered. More interestingly, STM shows submolecular details of the molecules involved in forming these structures, hence providing direct experimental evidence for the ability of the STM to provide physical structure information of standing up SAMs. This is indeed a heavily debated question, and this work reports the first experimental example where submolecular physical structure is revealed by STM for standing-up SAMs.