X‐Ray Emission Spectroscopy: A Spectroscopic Measure for the Determination of NO Oxidation States in Fe–NO Complexes

Extensive study of the electronic structure of Fe‐NO complexes using a variety of spectroscopic methods was attempted to understand how iron controls the binding and release of nitric oxide. The comparable energy levels of NO π* orbitals and Fe 3d orbitals complicate the bonding interaction within Fe? NO complexes and puzzle the quantitative assignment of NO oxidation state. Enemark–Feltham notation, {Fe(NO)_x}ⁿ, was devised to circumvent this puzzle. This 40‐year puzzle is revisited using valence‐to‐core X‐ray emission spectroscopy (V2C XES) in combination with computational study. DFT calculation establishes a linear relationship between ΔE_σ2s*‐σ2p of NO and its oxidation state. V2C Fe XES study of Fe? NO complexes reveals the ΔE_σ2s*‐σ2p of NO derived from NO σ_2s*/σ_2p→Fe_1s transitions and determines NO oxidation state in Fe? NO complexes. Quantitative assignment of NO oxidation state will correlate the feasible redox process of nitric oxide and Fe‐nitrosylation biology.     

One Electron Makes Differences: From Heme {FeNO}7 to {FeNO}8

The first X‐ray single‐crystal structure of a {FeNO}⁸ porphyrin complex [Co(Cp)₂][Fe(TFPPBr₈)(NO)], and the structure of the {FeNO}⁷ precursor [Fe(TFPPBr₈)(NO)] are determined at 100 K. The two complexes are also characterized by FTIR and UV/Vis spectroscopy. [Fe(TFPPBr₈)(NO)]^? shows distinct structural features in contrast to a nitrosyl iron(II) porphyrinate on the Fe? N? O^? moiety, which include a much more bent Fe? N? O^? angle (122.4(3)°), considerably longer Fe? NO^? (1.814(4)) and N? O^? (1.194(5) Å) bond distances. These and the about 180 cm^?1 downshift ν_N‐O stretch (1540 cm^?1) can be understood by the covalently bonding nature between the iron(II) and the NO^? ligand which possesses a two‐electron‐occupied π* orbital as a result of the reduction. The overall structural features of [Fe(TFPPBr₈)(NO)]^? and [Fe(TFPPBr₈)(NO)] suggest a low‐spin state of the iron(II) atom at 100 K.     

Ferric and ferrous iron in nitroso-myoglobin: computer simulations of stable and metastable States and their infrared spectra.

The binding of NO to iron is involved in the biological function of many heme proteins. Contrary to ligands like CO and O(2), which only bind to ferrous (Fe(II)) iron, NO binds to both ferrous and ferric (Fe(III)) iron. In a particular protein, the natural oxidation state can therefore be expected to be tailored to the required function. Herein, we present an ab initio potential-energy surface for ferric iron interacting with NO. This potential-energy surface exhibits three minima corresponding to eta(1)-NO coordination (the global minimum), eta(1)-ON coordination and eta(2) coordination. This contrasts with the potential-energy surface for Fe(II)-NO, which exhibits only two minima (the eta(2) coordination mode for Fe(II) is a transition state, not a minimum). In addition, the binding energies of NO are substantially larger for Fe(III) than for Fe(II). We have performed molecular dynamics simulations for NO bound to ferric myoglobin (Mb(III)) and compare these with results obtained for Mb(II). Over the duration of our simulations (1.5 ns), all three binding modes are found to be stable at 200 K and transiently stable at 300 K, with eventual transformation to the eta(1)-NO global-minimum conformation. We discuss the implication of these results related to studies of rebinding processes in myoglobin.     

Formation and Structure of Iodotrinitrosyliron, [Fe(NO)3I]

Iodotrinitrosyliron is formed by passing a stream of nitrogen monoxide over solid diiodotetracarbonyliron or in dichloromethane solution by reaction of nitrogen monoxide with the iodo bridged diiodotetranitrosyldiiron. Solid [Fe(NO)₃I] readily loses nitrogen monoxide to give [(ON)₂Fe(μ‐I)₂Fe(NO)₂](Fe‐Fe). The structure of freshly prepared [Fe(NO)₃I] was determined by X‐ray diffraction at 200 K and shows tetrahedral coordination with N‐Fe‐N and N‐Fe‐I angles of 110.3(2)° and 108.6(2)° and bent Fe‐N‐O groups (166.5(6)°). The monomeric [Fe(NO)₃I] and the dimer [Fe(NO)₂I]₂ can be clearly distinguished by the frequencies and the ratio of the intensities of the two NO absorptions and from the latter the tetrahedral ON‐Fe‐NO angle can be derived. A short overview on nitrosyl iron halides is given.     

Hydrophobic distal pocket affects NO-heme geminate recombination dynamics in dehaloperoxidase and H64V myoglobin

The recombination dynamics of NO with dehaloperoxidase (DHP) from Amphitrite ornata following photolysis were measured by femtosecond time-resolved absorption spectroscopy. Singular value decomposition (SVD) analysis reveals two important basis spectra. The first SVD basis spectrum reports on the population of photolyzed NO molecules and has the appearance of the equilibrium difference spectrum between the deoxy and NO forms of DHP. The first basis time course has two kinetic components with time constants of tau(11) approximately 9 ps and tau(12) approximately 50 ps that correspond to geminate recombination. The fast geminate process tau(11) arises from a contact pair with the heme iron in a bound state with S = 3/2 spin. The slow geminate process tau(12) corresponds to the recombination from a more remote docking site >3 A from the heme iron with the greater barrier corresponding to a S = 5/2 spin state. The second SVD basis spectrum represents a time-dependent Soret band shift indicative of heme photophysical processes and protein relaxation with time constants of tau(21) approximately 3 ps and tau(22) approximately 17 ps, respectively. A comparison between the more rapid rate constant of the slow geminate phase in DHP-NO and horse heart myoglobin (HHMbNO) or sperm whale myoglobin (SWMbNO) suggests that protein interactions with photolyzed NO are weaker in DHP than in the wild-type MbNOs, consistent with the hydrophobic distal pocket of DHP. The slower protein relaxation rate tau(22) in DHP-NO relative to HHMbNO implies less effective trapping in the docking site of the distal pocket and is consistent with a greater yield for the fast geminate process. The trends observed for DHP-NO also hold for the H64V mutant of SWMb (H64V MbNO), consistent with a more hydrophobic distal pocket for that protein as well. We examine the influence of solution viscosity on NO recombination by varying the glycerol content in the range from 0% to 90% (v/v). The dominant effect of increasing viscosity is the increase of the rate of the slow geminate process, tau(12), coupled with a population decrease of the slow geminate component. Both phenomena are similar to the effect of viscosity on wild-type Mb due to slowing of protein relaxation resulting from an increased solution viscosity and protein surface dehydration.     

Conversion of a Fleeting Open‐Shell Iron Nitride into an Iron Nitrosyl

Terminal metal nitrides have been proposed as key intermediates in a series of pivotal chemical transformations. However, exploring the chemical activity of transient tetragonal iron(V) nitrides is largely impeded by their facile dimerization in fluid solutions. Herein, in situ EPR and Mössbauer investigations are presented of unprecedented oxygenation of a paramagnetic iron(V) nitrido intermediate, [Fe^VN(cyclam‐ac)]⁺ ( 2 , cyclam‐ac^?=1,4,8,11‐tetraazacyclotetradecane‐1‐acetate anion), yielding an iron nitrosyl complex, [Fe(NO)(cyclam‐ac)]⁺ ( 3 ). Further theoretical studies suggest that during the reaction a closed‐shell singlet O atom is transferred to 2 . Consequently, the N?O bond formation does not follow a radical coupling mechanism proposed for the N?N bond formation but is accomplished by three mutual electron‐transfer pathways between 2 and the O atom donor, thanks to the ambiphilic nature of 2 .     

Nitrosylation of Nitric‐Oxide‐Sensing Regulatory Proteins Containing [4Fe‐4S] Clusters Gives Rise to Multiple Iron–Nitrosyl Complexes

The reaction of protein‐bound iron–sulfur (Fe‐S) clusters with nitric oxide (NO) plays key roles in NO‐mediated toxicity and signaling. Elucidation of the mechanism of the reaction of NO with DNA regulatory proteins that contain Fe‐S clusters has been hampered by a lack of information about the nature of the iron‐nitrosyl products formed. Herein, we report nuclear resonance vibrational spectroscopy (NRVS) and density functional theory (DFT) calculations that identify NO reaction products in WhiD and NsrR, regulatory proteins that use a [4Fe‐4S] cluster to sense NO. This work reveals that nitrosylation yields multiple products structurally related to Roussin's Red Ester (RRE, [Fe₂(NO)₄(Cys)₂]) and Roussin's Black Salt (RBS, [Fe₄(NO)₇S₃]. In the latter case, the absence of ³²S/³⁴S shifts in the Fe?S region of the NRVS spectra suggest that a new species, Roussin's Black Ester (RBE), may be formed, in which one or more of the sulfide ligands is replaced by Cys thiolates.     

Structure of Bromotrinitrosyl Iron, [Fe(NO)3Br], and DFT Calculations of the Structures of [Fe(NO)3X] (X = Cl,Br, I)

Bromotrinitrosyl iron was prepared by passing a stream of nitrogen monoxide over a mixture of iron dibromide and iron powder at elevated temperatures. It readily loses NO to give [(ON)₂Fe(μ‐Br)Fe(CO)₂]. The structure of freshly obtained [Fe(NO)₃Br] was determined by X‐ray diffraction at 200 K and shows (distorted) tetrahedral coordination with N–Fe–N and N–Fe–Br angles of 107.9(2)° and 111.0(2)° and bent Fe–N–O groups (162.5(6)°). The DFT calculations in the series [Fe(NO)₃X] (X = Cl, Br, I) reproduce well the experimental structural parameters and vibrational frequencies.     

Extending Metal‐to‐Polyoxometalate Charge Transfer Lifetimes: The Effect of Heterometal Location

In an effort to develop robust molecular sensitizers for solar fuel production, the electronic structure and photodynamics of transition‐metal‐substituted polyoxometalates (POMs), a novel class of compound in this context, was examined. Experimental and computational techniques including femtosecond (fs) transient absorption spectroscopy have been used to study the cobalt‐containing Keggin POMs, [Co^IIW₁₂O₄₀]^6? ( 1 a ), [Co^IIIW₁₂O₄₀]^5? ( 2 a ), [SiCo^II(H₂O)W₁₁O₃₉]^6? ( 3 a ), and [SiCo^III(H₂O)W₁₁O₃₉]^5? ( 4 a ), finding the longest lived charge transfer excited state so far observed in a POM and elucidating the electronic structures and excited‐state dynamics of these compounds at an unprecedented level. All species exhibit a bi‐exponential decay in which early dynamic processes with time constants in the fs domain yield longer lived excited states which decay with time constants in the ps to ns domain. The initially formed states of 1 a and 3 a are considered to result from metal‐to‐polyoxometalate charge transfer (MPCT) from Co^II to W, while the longer‐lived excited state of 1 a is tentatively assigned to a localized intermediate MPCT state. The excited state formed by the tetrahedral cobalt(II) centered heteropolyanion ( 1 a ) is far longer‐lived (τ=420 ps in H₂O; τ=1700 ps in MeCN) than that of 3 a (τ=1.3 ps), in which the single Co^II atom is located in a pseudo‐octahedral addendum site. Short‐lived states are observed for the two Co^III‐containing heteropolyanions 2 a (τ=4.4 ps) and 4 a (τ=6.3 ps) and assigned solely to O→Co^III charge transfer. The dramatically extended lifetime for 1 a versus 3 a is ascribed to a structural change permitted by the coordinatively flexible central site, weak orbital overlap of the central Co with the polytungstate framework, and putative transient valence trapping of the excited electron on a single W atom, a phenomenon not noted previously in POMs.     

Modeling structures and vibrational frequencies for dinitrosyl iron complexes (DNICs) with density functional theory

The biochemical and physiological importance of nitric oxide (NO) in signaling and vasodilation has been studied for several decades. The discovery of both protein-bound and free low molecular weight dinitrosyl iron complexes (DNICs) suggests that such compounds might play roles in biological NO storage and transport. These complexes have important distinguishing spectroscopic features, including EPR and M?ssbauer spectra, and NO vibrational frequencies (ν((NO))). The latter are particularly sensitive to modifications of the ligand environment and metal oxidation states. Examinations of functionals and basis sets delineate their effect on the NO vibrational frequencies and allow development of a methodology to calculate these frequencies in other DNICs. Three complexes of the form (L)(CO)Fe(NO)(2) (L = CO, N,N'-dimethyl-imidazol-2-ylidene (IMe) or 1-methylimidazole (MeImid)), where {Fe(NO)(2)}(10) is in its reduced form, have been used to calibrate the vibrational frequencies. The functional BP86 paired with a basis set of SDD/ECP on the metal and 6-311++G(d,p) on the ligand atoms exhibits the most accurate results, with deviations from experimental vibrational frequencies of no more than ±40 cm(-1). Subsequent investigations were performed on a series of diiron trinitrosyl complexes of the form {Fe(NO)}(7)-{Fe(NO)(2)}(9) bridged by sulfurs, namely, [(ON)Fe(μ-S,S-C(6)H(4))(2)Fe(NO)(2)](-), [Fe(NO)(2){Fe(NS(3))(NO)}-μ-S,S'], and [(ON)Fe(bme-dach)Fe(NO)(2)-μ-S,S'](+), with the ideal functional/basis set pair determined via the aforementioned test set. The ground state energetics (singlet/triplet/singlet, respectively), geometric parameters, and nitrosyl vibrational frequencies were calculated. The results for the former two complexes correlated well with the experimental work, and in contrast with what was reported in an earlier computational study, a stable triplet ground state structure was optimized for [Fe(NO)(2){Fe(NS(3))(NO)}-μ-S,S']. For [(ON)Fe(bme-dach)Fe(NO)(2)-μ-S,S'](+), whose synthesis and structure were recently reported, the geometric parameters, vibrational frequencies, and total energies compare well to experimental ones and favor a singlet ground state.     

Not Limited to Iron: A Cobalt Heme–NO Model Facilitates N–N Coupling with External NO in the Presence of a Lewis Acid to Generate N2O

Some bacterial heme proteins catalyze the coupling of two NO molecules to generate N₂O. We previously reported that a heme Fe–NO model engages in this N?N bond‐forming reaction with NO. We now demonstrate that (OEP)Co^II(NO) similarly reacts with 1 equiv of NO in the presence of the Lewis acids BX₃ (X=F, C₆F₅) to generate N₂O. DFT calculations support retention of the Co^II oxidation state for the experimentally observed adduct (OEP)Co^II(NO?BF₃), the presumed hyponitrite intermediate (P^.+)Co^II(ONNO?BF₃), and the porphyrin π‐radical cation by‐product of this reaction, and that the π‐radical cation formation likely occurs at the hyponitrite stage. In contrast, the Fe analogue undergoes a ferrous‐to‐ferric oxidation state conversion during this reaction. Our work shows that cobalt hemes are chemically competent to engage in the NO‐to‐N₂O conversion reaction.     

Temperature-dependent studies of NO recombination to heme and heme proteins

The rebinding kinetics of NO to the heme iron of myoglobin (Mb) is investigated as a function of temperature. Below 200 K, the transition-state enthalpy barrier associated with the fastest (approximately 10 ps) recombination phase is found to be zero and a slower geminate phase (approximately 200 ps) reveals a small enthalpic barrier (approximately 3 +/- 1 kJ/mol). Both of the kinetic rates slow slightly in the myoglobin (Mb) samples above 200 K, suggesting that a small amount of protein relaxation takes place above the solvent glass transition. When the temperature dependence of the NO recombination in Mb is studied under conditions where the distal pocket is mutated (e.g., V68W), the rebinding kinetics lack the slow phase. This is consistent with a mechanism where the slower (approximately 200 ps) kinetic phase involves transitions of the NO ligand into the distal heme pocket from a more distant site (e.g., in or near the Xe4 cavity). Comparison of the temperature-dependent NO rebinding kinetics of native Mb with that of the bare heme (PPIX) in glycerol reveals that the fast (enthalpically barrierless) NO rebinding process observed below 200 K is independent of the presence or absence of the proximal histidine ligand. In contrast, the slowing of the kinetic rates above 200 K in MbNO disappears in the absence of the protein. Generally, the data indicate that, in contrast to CO, the NO ligand binds to the heme iron through a "harpoon" mechanism where the heme iron out-of-plane conformation presents a negligible enthalpic barrier to NO rebinding. These observations strongly support a previous analysis (Srajer et al. J. Am. Chem. Soc. 1988, 110, 6656-6670) that primarily attributes the low-temperature stretched exponential rebinding of MbCO to a quenched distribution of heme geometries. A simple model, consistent with this prior analysis, is presented that explains a variety of MbNO rebinding experiments, including the dependence of the kinetic amplitudes on the pump photon energy.     

In Situ Synthesis and Nonvolatile Rewritable‐Memory Effect of Polyaniline‐Functionalized Graphene Oxide

A new polyaniline (PANI)‐functionalized graphene oxide (GO‐PANI) was prepared by using an in situ oxidative graft polymerization of aniline on the surface of GO. Its highest occupied molecular orbital (HOMO), lowest unoccupied molecular orbital (LUMO), ionization potential (IP), and electron affinity (EA) values experimentally estimated by the onset of the redox potentials were ?5.33, ?3.57, 5.59, and 3.83 eV, respectively. A bistable electrical‐switching effect was observed in electronic device with the GO‐PANI film sandwiched between the indium tin oxide (ITO) and Al electrodes. This device exhibited two accessible conductivity states, that is, the low‐conductivity (OFF) state and the high‐conductivity (ON) state, and can be switched to the ON state under a negative electrical sweep, and can also be reset to the initial OFF state by a reverse (positive) electrical sweep. The ON state is nonvolatile and can withstand a constant voltage stress of ?1 V for 3 h and 10⁸ read cycles at ?1 V under ambient conditions. The nonvolatile nature of the ON state and the ability to write, read, and erase the electrical states, fulfill the functionality of a rewritable memory. An ON/OFF current ratio of more than 10⁴ at ?1 V achieved in this memory device is high enough to promise a low misreading rate through the precise control of the ON and OFF states. The mechanism associated with the memory effects was elucidated from molecular simulation results.     

Chelate‐Thiolate‐Coordinate Ligands Modulating the Configuration and Electrochemical Property of Dinitrosyliron Complexes (DNICs)

As opposed to the reversible redox reaction ({Fe(NO)₂}¹⁰ reduced‐form DNIC [(NO)₂Fe(S(CH₂)₃S)]^2? ( 1 )?{Fe(NO)₂}⁹ oxidized‐form [(NO)₂Fe(S(CH₂)₃S)]^?), the chemical oxidation of the {Fe(NO)₂}¹⁰ DNIC [(NO)₂Fe(S(CH₂)₂S)]^2? ( 2 ) generates the dinuclear {Fe(NO)₂}⁹–{Fe(NO)₂}⁹ complex [(NO)₂Fe(μ‐SC₂H₄S)₂Fe(NO)₂]^2? ( 3 ) bridged by two terminal [SC₂H₄S]^2? ligands. On the basis of the Fe K‐edge pre‐edge energy and S K‐edge XAS, the oxidation of complex 1 yielding [(NO)₂Fe(S(CH₂)₃S)]^? is predominantly a metal‐based oxidation. The smaller S1‐Fe1‐S2 bond angle of 94.1(1)° observed in complex 1 (S1‐Fe1‐S2 88.6(1)° in complex 2 ), compared to the bigger bond angle of 100.9(1)° in the {Fe(NO)₂}⁹ DNIC [(NO)₂Fe(S(CH₂)₃S)]^?, may be ascribed to the electron‐rich {Fe(NO)₂}¹⁰ DNIC preferring a restricted bite angle to alleviate the electronic donation of the chelating thiolate to the electron‐rich {Fe(NO)₂}¹⁰ core. The extended transition state and natural orbitals for chemical valence (ETS‐NOCV) analysis on the edt‐/pdt‐chelated {Fe(NO)₂}⁹ and {Fe(NO)₂}¹⁰ DNICs demonstrates how two key bonding interactions, that is, a Fe?S covalent σ bond and thiolate to the Fe d charge donation, between the chelating thiolate ligand and the {Fe(NO)₂}^9/10 core could be modulated by the backbone lengths of the chelating thiolate ligands to tune the electrochemical redox potential (E_1/2=?1.64 V for complex 1 and E_1/2=?1.33 V for complex 2 ) and to dictate structural rearrangement/chemical transformations (S‐Fe‐S bite angle and monomeric vs. dimeric DNICs).     

The Fe2(NO)2 Diamond Core: A Unique Structural Motif In Non‐Heme Iron–NO Chemistry

Non‐heme high‐spin (hs) {FeNO}⁸ complexes have been proposed as important intermediates towards N₂O formation in flavodiiron NO reductases (FNORs). Many hs‐{FeNO}⁸ complexes disproportionate by forming dinitrosyl iron complexes (DNICs), but the mechanism of this reaction is not understood. While investigating this process, we isolated a new type of non‐heme iron nitrosyl complex that is stabilized by an unexpected spin‐state change. Upon reduction of the hs‐{FeNO}⁷ complex, [Fe(TPA)(NO)(OTf)](OTf) ( 1 ), the N‐O stretching band vanishes, but no sign of DNIC or N₂O formation is observed. Instead, the dimer, [Fe₂(TPA)₂(NO)₂](OTf)₂ ( 2 ) could be isolated and structurally characterized. We propose that 2 is formed from dimerization of the hs‐{FeNO}⁸ intermediate, followed by a spin state change of the iron centers to low‐spin (ls), and speculate that 2 models intermediates in hs‐{FeNO}⁸ complexes that precede the disproportionation reaction.     

Theoretical study of NO adsorption/dissociation on Pd (100) and (111) surfaces

Both adsorption and dissociation of the diatomic molecular NO on Pd (100) and (111) surfaces are studied using the extended London‐Eyring‐Polyani‐Sato (LEPS) method constructed by means of 5‐MP (the 5‐parameter Morse potential). All critical characteristics of the system that we obtain, such as adsorption geometry, binding energy, eigenvalues for vibration, are in good agreement with the experimental results. On Pd (100) surface, NO prefers to adsorb in fourfold hollow site (H) uprightly at low coverage. With increase in the coverage NO gradually tilts in fourfold hollow and bridge sites. For NO? Pd (111) system, two adsorption states are found at low coverage, of which one adsorption state is the B(tilt) state that the centroid of NO projects at bridge site, another (H? B? H state) that NO almost parallels to the (111) surface with the vibration frequency of 610 cm^?1, but the frequency is near to that of the atoms, which is easy to be ignored in experiments. At high coverage, two transitional states (BH and HT) are found. NO is difficult to dissociate on Pd (100) and (111) surfaces. Especially for NO? Pd (111) system, the three‐well‐potential dissociation mode is initially put forward to show the remarkable dissociation process with two dissociation transitional states of NO on Pd (111). Copyright © 2008 John Wiley & Sons, Ltd.     

Anchoring Fe Ions to Amorphous and Crystalline Oxides: A Means To Tune the Degree of Fe Coordination

We report on an IR spectroscopic study on the room‐temperature adsorption of NO on different iron(II )‐containing siliceous matrices. Fe²⁺ hosted inside the channels of MFI‐type zeolites (Fe‐ZSM‐5 and Al‐free Fe‐silicalite) exhibits pronounced coordinative unsaturation, as witnessed by the capability to form, at 300 K, [Fe²⁺(NO)], [Fe²⁺(NO)₂] and [Fe²⁺(NO)₃] complexes with increasing NO equilibrium pressure. Fe²⁺ hosted on amorphous supports (high surface area SiO₂ and MCM‐41) sinks more deeply into the surface of the siliceous support and thus exhibits less pronounced coordinative unsaturation: only [Fe²⁺(NO)₂] complexes were observed, even at the highest investigated NO equilibrium pressures. Activation at higher temperature (1073 K) of the Al‐free Fe‐silicalite sample resulted in the appearance of Fe²⁺ species similar to those observed on SiO₂ and MCM‐41, and this suggests that local (since not detectable by X‐ray diffraction) amorphisation of the environment around Fe²⁺ anchoring sites occurs. The fact that this behaviour is not observed on the Fe‐ZSM‐5 sample activated at the same temperature suggests that framework Al species (and their negatively charged oxygen environment) have an important role in anchoring extraframework Fe²⁺ species. Such an anchoring phenomenon will prevent a random migration of iron species, with subsequent aggregation and loss of coordinative unsaturation. These observations can thus explain the higher catalytic activity of the Fe‐ZSM‐5 system in one‐step benzene to phenol conversion when compared with the parent, Al‐free, Fe‐silicalite system with similar Fe content. The nature of the support and the activation temperature can therefore be used as effective means to tune the degree of Fe coordination.     

3D Motions of Iron in Six‐Coordinate {FeNO}7 Hemes by Nuclear Resonance Vibration Spectroscopy

The vibrational spectrum of a six‐coordinate nitrosyl iron porphyrinate, monoclinic [Fe(TpFPP)(1‐MeIm)(NO)] (TpFPP=tetra‐para‐fluorophenylporphyrin; 1‐MeIm=1‐methylimidazole), has been studied by oriented single‐crystal nuclear resonance vibrational spectroscopy (NRVS). The crystal was oriented to give spectra perpendicular to the porphyrin plane and two in‐plane spectra perpendicular or parallel to the projection of the FeNO plane. These enable assignment of the FeNO bending and stretching modes. The measurements reveal that the two in‐plane spectra have substantial differences that result from the strongly bonded axial NO ligand. The direction of the in‐plane iron motion is found to be largely parallel and perpendicular to the projection of the bent FeNO on the porphyrin plane. The out‐of‐plane Fe‐N‐O stretching and bending modes are strongly mixed with each other, as well as with porphyrin ligand modes. The stretch is mixed with v₅₀ as was also observed for dioxygen complexes. The frequency of the assigned stretching mode of eight Fe‐X‐O (X=N, C, and O) complexes is correlated with the Fe?XO bond lengths. The nature of highest frequency band at ≈560 cm^?1 has also been examined in two additional new derivatives. Previously assigned as the Fe?NO stretch (by resonance Raman), it is better described as the bend, as the motion of the central nitrogen atom of the FeNO group is very large. There is significant mixing of this mode. The results emphasize the importance of mode mixing; the extent of mixing must be related to the peripheral phenyl substituents.     

Single- and double-linkage isomerism in a six-coordinate iron porphyrin containing nitrosyl and nitro ligands

Density Functional theoretical calculations confirm the experimental observation that the low-temperature photolysis of (TPP)Fe(NO)(NO2) (as a KBr pellet) results in the generation of linkage isomers involving the axial NO and NO2 groups and suggest the possible formation of the double linkage isomer (TPP)Fe(ON)(ONO). The energy difference between the ground state (porphine)Fe(NO)(NO2) and the double-linkage isomer (porphine)Fe(ON)(ONO) is 1.57 eV, which is comparable to the 1.59 eV calculated previously for the nitrosyl-to-isonitrosyl linkage isomerism in the five-coordinate (porphine)Fe(NO) analogue.     

A theoretical study on the reaction pathways of peroxynitrite formation and decay at nonheme iron centers

A computational study based on density functional theory was undertaken to identify possible reaction pathways for the formation and decomposition of peroxynitrite at models of the active sites of the nonheme superoxide scavenging enzymes superoxide reductase (SOR) and iron superoxide dismutase (FeSOD). Two peroxynitrite isomers and their possible protonated states were investigated, namely Fe? OONO^?, Fe? N(O)OO^?, Fe? OONOH, and Fe? N(O)OOH. Peroxynitrite formation at the active sites was assumed by either the interaction of a peroxynitrite cis/trans anion with the pentacoordinated iron active site or the interaction between a nitric oxide bound adduct and superoxide; both scenarios were found to be facile for all models investigated. The ferrous adducts of the Fe? OONO^?isomer were found to undergo instant heterolytic cleavage of the O? ONO bond to yield nitrite, whereas for the ferric adducts, the homolytic cleavage of the O? ONO bond to yield nitrogen dioxide was found to be energetically facile. For the Fe? N(O)OO^? isomer, the active site models of FeSOD and SOR were only able to accommodate the cis isomer of peroxynitrite. Ferric adducts of the cis Fe? OONO^? isomer were found to be energetically more stable than their trans counterparts and were also more stable than the cis adducts of the Fe? N(O)OO^? isomer; conversely, the protonated forms of all adducts of the Fe? OONOH isomer were found to be lower in energy than their equivalent Fe? N(O)OOH adducts. Multiple reaction pathways for the decomposition of the formed peroxynitrite adducts (whether the anions or the protonated forms) were proposed and explored. The energy requirements for the decomposition processes ranged from exothermic to highly demanding depending on the peroxynitrite isomer, the type of model (whether an SOR or FeSOD active site), and the oxidation state of iron. © 2014 Wiley Periodicals, Inc.