Co-gelation mechanism of xanthan and galactomannan

Synergistic gelation of dilute (0.1% total gums) mixed solutions of xanthan and galactomannan isolated from seeds of Delonix regia was investigated. Gelation occurred in a mixed solution of xanthan and galactomannan at 0.1% total gums at room temperature (25 °C). The flow curves of mixed solutions of native xanthan and galactomannan showed plastic behavior. The maximum elastic modulus was obtained when the ratio of the xanthan to galactomannan was 2:1 at room temperature (25 °C). The largest elastic modulus was observed in the mixture solution of deacetylated xanthan. However, a small elastic modulus was obtained in the mixture with depyruvated xanthan. The results obtained supported the interaction mechanism between xanthan and galactomannan (locust bean gum) previously proposed, and the pyruvate methyl groups might also take part in the interaction.     

Monte Carlo simulations on short single-stranded oligonucleotides. I. Application to RNA trimers

Monte Carlo (MC) structural simulation of short RNA sequences has been carried out by random variations of the nucleotide conformational angles (i.e., phosphodiester chain torsional angles and sugar pucker pseudorotational angles). All of the chemical bond lengths and valence angles remained fixed during the structural simulation, except those of the sugar pucker ring. In this article we present the simulated structures of RNA trimers—r(AAA) and r(AAG)—obtained at 11°C and 70°C. The influence of various initial conformations (selected as starting points in the MC simulations) on the equilibrium conformations has been discussed. The simulated conformational angles have been compared with those estimated by nuclear magnetic resonance (NMR) spectroscopy. For both of the oligonucleotides studied here, the most stable structures are helical conformations with stacked bases, at 11°C and 70°C. However, when the starting point is a stretched chain, it is found that r(AAA) adopts a reverse-stacked structure at low temperature (11°C), in which the A3 base is located between the A1 and A2 bases. Although the energies of these conformations (helical and reverse stacked) are very close to each other, the potential barrier between them is extremely high (close to 30 kcal/mol). This hinders the conformational transition from one structure to the other at a given temperature (and in the course of a same MC simulation). However, it is possible to simulate this structural transition by heating the reverse-stacked structure up to 500°C and cooling down progressively to 70°C and 11°C: Canonical helical structures have been obtained by this procedure. © 1994 by john Wiley & Sons, Inc.     

甲壳型液晶聚合物纤维的形状记忆效应

采用TA-Q800动态热机械分析仪(DMA)研究了聚乙烯基对苯二甲酸二(对丁氧基苯)酯(PBPCS)纤维的形变回复性能,发现PBPCS纤维具有非常好的形状记忆效应,在145℃及以上温度,形状回复速率最好,9min左右可以从400%的伸长回复到原来的尺寸,于145℃,重复实验5次,结果说明形变回复重复性好.二维X衍射(2DX-Ray)研究显示形变前后PBPCS柱状分子直径d由2.54nm变为2.42nm,表明拉伸后PBPCS螺旋状的大分子主链处于更为伸直的构象,因此分子主链产生一定的内应力,即形变回复应力.由此可见,PBPCS相对柔性的聚乙烯主链使纤维具有良好的形变回复性能,而侧基的甲壳效应使得纤维能够保持初始尺寸,即PBPCS所具有的类似弹簧的特殊螺旋状分子结构是其纤维具有形状记忆效应的内在原因.     

Influence de la temperature et du gradient de vitesse sur la viscosite des solutions diluees de xanthane

The dependence of the relative viscosity of a dilute xanthan solution (0.4 g·l^?1) has been studied as a function of temperature (20–70°) and of the ionic strength of the solvent. When the rate of shear exceeds 100 sec^?1, the viscosity can be expressed as γ̊ the exponent (n ? 1) varies with the polymer conformation. In aqueous solution in the absence or in the presence of added salt at a temperature above the melting temperature T_M (depending on the ionic strength of the solvent), the exponent (n ? 1) is ?0.285 and corresponds to the unordered conformation; at temperatures below T_M, the local helical conformation is rigid and (n ? 1) is ～ ?0.44 almost independent of the temperature.     

Infrared spectra of polymer solutions. I. Conformational stability of isotactic polymer chains in solution

The infrared spectra of isotactic polystyrene, polypropylene, and poly-p-chlorostyrene were measured in dilute solutions or gels at various temperatures ranging from room temperature to ?100°C. For isotactic polystyrene and polypropylene, all the absorption bands characteristic of the helical conformation of the molecules increase in intensity with decreasing temperature, and show intensities at low temperature as strong as in the highly crystallized samples. This suggests that the molecules can assume very regular conformations even in solution. Similar temperature dependence of the spectra was observed for a homogeneous gel of isotactic poly-p-chlorostyrene, which is believed to be noncrystalline. These experimental facts lead to the conclusion that the stability of the TG type helical conformation of these isotactic polymers may be ascribed to the intramolecular forces within a molecule. The fact that these spectral changes are reversible has permitted a thermodynamic treatment of the conformational regularity in solution on the basis of the infrared data. The temperature dependence of the absorption intensities has been interpreted quantitatively by a simple statistical mechanical model, and the enthaply and the entropy differences between the helical and the random states of the monomeric residue in the molecular chain have been estimated.     

Synthesis and structure of an optically active π‐stacked poly(dibenzofulvene) bearing chiral terminal group

Dibenzofulvene (DBF) affords a polymer having π‐stacked conformation by anionic, cationic, and free‐radical polymerization. In this study, DBF was polymerized anionically using potassium menthoxide as initiator to obtain optically active poly(DBF) having a chiral menthoxy group as a terminal group. The obtained polymer indicated circular dichroism (CD) absorption bands in the absorption wavelength range of fluorenyl group, indicating that chiral conformation was induced to the stacked main chain by the influence of the terminal group. The CD intensity was reversibly affected by temperature of measurement; hence, the chiral conformation may be rather dynamic. The effect of the terminal group was found to decrease as the chain length increased. Theoretical CD calculation indicated that the obtained polymer has a left‐handed helical conformation and that the dihedral angle between neighboring monomeric units might be about 10–20°. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 239–246, 2009     

A novel type of optically active helical polymers: Synthesis and characterization of poly(N‐propargylureas)

This article presents two novel artificial helical polymers, substituted polyacetylenes with urea groups in side chains. Poly( 4 ) and poly( 5 ) can be obtained in high yields (≥97%) and with moderate molecular weights (11,000–14,000). Poly( 4 ) contains chiral centers in side chains, and poly( 5 ) is an achiral polymer. Both of the two polymers adopted helical structures under certain conditions. More interestingly, poly( 4 ) exhibited large specific optical rotations, resulting from the predominant one‐handed screw sense. The helical conformation in poly( 5 ) was stable against heat, while poly( 4 ) underwent conformational transition from helix to random coil upon increasing temperature from 0 to 55 °C. Solvents had considerable influence on the stability of the helical conformation in poly( 4 ). The screw sense adopted by the helices was also largely affected by the nature of the solvent. Poly( 4 ‐co‐ 5 )s formed helical conformation and showed large optical rotations, following the Sergeants and Soldiers rule. By comparing the present two polymers (with one ? N? H groups) with the three polymers previously reported (with two ? N? H groups in side chains), the nature of the hydrogen bonds formed between the neighboring urea groups played big roles in the formation of stable helical conformation. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 4112–4121, 2008     

(−)-Sparteine: The compound that most significantly influenced my research

A chiral diamine alkaloid, (−)-sparteine (Sp), has been found to be very effective as a ligand for Grignard reagents when used for the enantiomer-selective polymerization of racemic RS-1-phenylethyl methacrylate. The enantiomeric excess of the initially polymerized monomer is 93%, and at about a 60% conversion, nearly optically pure R-monomer is recovered. This enantiomer selectivity is today the highest in polymer chemistry. Triphenylmethyl methacrylate (TrMA) is a unique monomer that gives a highly isotactic polymer even during radical polymerization. When TrMA is polymerized with the Sp complex with n-butyllithium in toluene at −78 °C, an optically active, isotactic polymer [poly(triphenylmethyl methacrylate) (PTrMA)] with a one-handed helical conformation is obtained. The helical structure is maintained even at room temperature in solution. Analogous helical polymethacrylates that show various conformational changes have also been found. One-handed helical PTrMA exhibits high chiral recognition to a variety of racemates as a chiral stationary phase (CSP) for high-performance liquid chromatography. This finding has led to the development of very powerful CSPs based on polysaccharides, such as cellulose and amylose. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 4480–4491, 2004     

Stereospecific and asymmetric polymerization of 1-phenyldibenzosuberyl methacrylate with radical and anionic initiators

Stereospecific and asymmetric (helix-sense-selective) polymerization of 1-phenyldibenzosuberyl methacrylate (PDBSMA) was performed with radical and anionic initiators. A highly isotactic polymer having triad isotacticity greater than 97% was obtained by radical polymerization with (i-PrOCOO)₂ at 40°C. The radical polymerization of PDBSMA in (+)- and (-)-menthol gave (-)-and (+)-polymers, respectively, whose optical activity is ascribed to the prevailing one-handed helical conformation of a polymer chain. The radical copolymerization of PDBSMA with a small amount of an optically active monomer, (+)-phenyl-2-pyridyl-o-tolylmethyl methacrylate, afforded an optically active copolymer with the prevailing one-handed helical structure of PDBSMA sequences. Asymmetric anionic polymerization of PDBSMA was carried out with the complex of N, N′-diphenylethylenediamine monolithium amide and a chiral ligand, (+)-1-(2-pyrrolidinylmethyl)pyrrolidine in toluene at −78°C. The obtained polymer was highly isotactic and optically active due to nearly 100% one-handed helical structure.     

The new science of protein mimetics

New chemistries have been developed for de novo protein design. Protein mimetics of different structural and functional properties such as synthetic peptide ligases and Dn symmetrical helical bundles have been reported. The Template-Assembled Synthetic Protein (TASP) method (as well as the ßMolecular Kit' approach) has also been utilized to prepare protein-like molecules. Here we report the synthesis of single chain, scaffold (TRIS)- and dendrimer-assembled collagen mimetics composed of the Gly-Nleu-Pro sequence where Nleu denotes N-isobutyl glycine. From the CD spectra and the thermal denaturation studies it can be seen that the collagen mimetics prepared form stable triple helices except the single chain structure. Furthermore, the 162-residue collagen mimetic dendrimer exhibits enhanced triple helical stability compared to the equivalent scaffold-terminated structure by an increase in the melting temperature in both H₂O and 2:1 ethylene glycol/H₂O (4°C and 12°C respectively). The concentration dependence for the melting transition of the collagen mimetic dendrimer was measured from which it was determined that the stabilization effect arises from the intramolecular clustering of the triple helical arrays about the core structure. This ensemble excludes solvent from the interior portion of the array which stabilizes the triple helix cluster.     

Temperature‐induced conformational transition of bovine serum albumin in neutral aqueous solution by reversed‐phase liquid chromatography

The temperature‐induced conformational transition of bovine serum albumin (BSA) in neutral aqueous solution was studied using intrinsic fluorescence emission spectrum, reversed‐phase liquid chromatography and sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and the conformation transition thermodynamic parameters were determined in the temperature range 12–50 °C. The results showed that, in the temperature range 12–20 °C, BSA only existed in a single conformation state A, while in the temperature range 22–50 °C, it existed in two different conformation states: A and B. The percentage of conformation state A decreased while that of conformation state B increased with the increase in temperatures, and when temperature approached 50 °C conformation state B accounted for approximately 25% of all conformation states of BSA. In the conformational transition of BSA from conformation state A to conformation state B, the positive enthalpy change, entropy change and free energy changes demonstrated that the conformational transition was endothermic, nonspontaneous and mainly entropy‐driven. © 2013 The Authors. Biomedical Chromatography published by John Wiley & Sons, Ltd.     

Comparative study of the thermodynamics and extrathermodynamics on the conformational transformation and adsorption of bovine serum albumin

The adsorption and conformation transformation of bovine serum albumin (BSA) on a reversed-phase octadecylsilyl group based on silica reversed-phase chromatographic column were studied in the temperature of 12–50°C. The thermodynamic and extrathermodynamic data were determined and compared to each other. The results showed that when temperature was below 20°C, BSA existed only in its native conformation state A; whereas when temperature was over 20°C, parts of the conformation state A changed to state B. In transformation process, endothermal and nonspontaneous reaction occurred and the entropy change was favorable for the transformation; while in adsorption process, the reaction was exothermal and spontaneous and driven simultaneously by enthalpy and entropy change. The compensation temperature in the conformation transformation of BSA was significantly less than that in the adsorption of the two conformation states. This phenomenon demonstrated the big difference during the two processes.     

Optically Active Polysilylenes: State‐of‐the‐Art Chiroptical Polymers

Controlled synthesis, chiroptical characterization, and manipulation of artificial helical polymers are challenging issues in modern polymer stereochemistry. Although many artificial polymers adopting a preferential screw‐sense helical structure have been investigated, optically active polysilylenes bearing chiral side chains may be among the most suitable to elucidate the inherent nature of the helical structure, since these polymers offer powerful spectroscopic probes as a result of their ideal chromophoric and fluorophoric main chain properties around 300–330 nm. The present paper will review comprehensively the helix‐property‐functionality relationship between side chain structure, global and local main chain conformation, (chir)optical properties, electronic properties, several helical cooperative phenomena, the effects of temperature and solvent polarity, and molecular imaging. This knowledge and understanding of the nature of the polysilylene helix might constitute a bridge between artificial polymers and biopolymers and will assist in designing and controlling new types of helical polymers directed to diverse screw‐sense‐related properties and applications in the future.     

Competitive influence of atactic polystyrene and supercritical carbon dioxide on the conformation of syndiotactic polystyrene

The crystallization behavior of miscible syndiotactic polystyrene (sPS) and atactic polystyrene (aPS) blends with different sPS/aPS weight ratios was investigated in supercritical CO₂ by using Fourier‐transform infrared spectroscopy, differential scanning calorimetry, and wide‐angle X‐ray diffraction. Supercritical CO₂ and aPS exhibited different effects on the conformational change of sPS and competed with each other. Increasing the content of amorphous aPS in the blends made its effect on the conformational change of sPS gradually surpass that of supercritical CO₂. Supercritical CO₂ favored the formation of the helical conformation of sPS in lower temperature range and the all trans planar conformation in higher temperature range, instead of forming the latter one only in higher temperature range in ambient atmosphere. However, increasing aPS content in the blends pushed the range for forming the helical conformation to lower temperature and made the all trans planar conformation dominant in aPS/sPS 25/75 blend after treating in supercritical CO₂ above 60 °C. The all trans planar zigzag conformation was more favorable than the helical conformation after mixing aPS in sPS in supercritical CO₂. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 1755–1764, 2007     

Gelation Studies, 3

Summary: The sol‐gel transition of one thermoreversible gelling mixture made of xanthan gum and locust bean gum has been studied by using in situ time‐resolved dynamic light scattering (DLS) and measuring the spin‐lattice relaxation time T₁ of several protons. A critical dynamical behavior was observed near the sol‐gel transition, which is characterized by the presence of power‐law spectra over four decades of the delay time in the time‐intensity correlation function g₂(t)−1 ∼ t^−μ at 48 °C. The increase in T₁ with increasing temperature becomes steeper at 50 °C indicating a significant change in the local mobility of one anomeric proton of the xanthan side chain and the anomeric protons of the locust bean gum mannose backbone.

Temperature dependence of the spin‐lattice relaxation time T₁ for the equatorial anomeric proton of the mannopyranosic unit located next to the main chain of the xanthan.     

Synthesis of polyisocyanide derived from phenylalanine and its temperature‐dependent helical conformation

Screw‐sense‐selective polymerization of the chiral isocyanide monomers derived from phenylalanine with NiCl₂ as a catalyst in methanol to yield helical‐conjugated polyisocyanide was investigated with respect to the thermal stability of its helical conformation. Poly(1‐tert‐butoxycarbonyl‐2‐phenylethyl isocyanide) (poly 1c ) took a stable helical conformer independent of the polymerization temperature. In poly(1‐ethoxycarbonyl‐2‐phenylethyl isocyanide) (poly 2c ), which had slightly smaller side groups, the helical conformation was thermally destabilized. The specific rotation and circular dichroism of poly 2c prepared at temperatures greater than 40 °C were considerably depressed in comparison with the values for poly 2c prepared at or below room temperature. Additionally, poly 2c prepared at low temperatures exhibited reversible temperature‐dependent specific rotation and circular dichroism, whereas poly 1c showed few changes. It is suggested that polyisocyanide derived from phenylalanine takes various helical conformers (i.e., from tightly to loosely coiled helices), the thermal stability of which depends on the size of the side group. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 40: 399–408, 2002     

Temperature dependence of the conformation of isotactic polystyrene in toluene

In order to obtain information about a possible helix–coil transition of isotactic polystyrene (i-PS) at 80°C in toluene, as has been reported in other solvents, solution properties were examined at temperatures between 10 and 110°C. Use was made of viscometry, high-resolution nuclear magnetic resonance, infrared spectroscopy, calorimetry, and light scattering. No distinct transition was found at 80°C but rather a second-order transition between 62 and 65°C. A similar transition occurred in toluene solutions of atactic polystyrene. The transition may be attributed to a sudden change in the mobility of the phenyl side-group of the polymer. From this study it is concluded that i-PS has a helical conformation in toluene, the mean helix length decreasing smoothly with increasing temperature.     

Local chain mobility of gellan in aqueous systems studied by fluorescence depolarization

The local chain mobility of a gellan, an electrolyte polysaccharide, in aqueous systems was examined with respect to the effect of the temperature, the concentration of gellan (c(G)), and the concentration of added salt (c(S)). The relaxation time of local motion was estimated for fluorescein isothiocyanate (FITC)-labeled-gellan by the fluorescence depolarization technique, and the chain mobility was discussed. The relaxation time increased with decreasing temperature, in particular when accompanying the coil-helix transition due to the great difference in chain mobility between the coil and the helical conformations. The effect of c(G) was observed for gellan solutions even below the critical concentration of chain entanglement (2 wt.-%) for well-expanded nonelectrolyte polymers with size similar to that of the gellan. This suggests that the actual excluded volume of gellan is larger than that of nonelectrolyte polymers due to the electrostatic repulsion between segments. The relaxation time for 0.2 wt.-% systems of gellan in coil conformation is independent of c(S), whereas a c(S) dependence of the relaxation time is clearly observed for 0.5 wt.-% systems. The degree of expansion of the gellan chain is independent of the shielding effect of cations on the electrostatic repulsion between gellan segments due to the stiffness of gellan chain. On the other hand, the c(G) as well as the c(S) dependence of the chain mobility is clearly observed for gellan in the helical conformation, examined over the concentration range, probably due to the partial aggregation of helices induced by the attractive interaction between gellan segments.     

Helical Folding of Conjugated Oligo(phenyleneethynylene): Chain‐Length Dependence,Solvent Effects,and Intermolecular Assembly

As a representative folding system that features a conjugated backbone, a series of monodispersed (o‐phenyleneethynylene)‐alt‐(p‐phenyleneethynylene) (PE) oligomers of varied chain length and different side chains were studied. Molecules with the same backbone but different side‐chain structures were shown to exhibit similar helical conformations in respectively suitable solvents. Specifically, oligomers with dodecyloxy side chains folded into the helical structure in apolar aliphatic solvents, whereas an analogous oligomer with tri(ethylene glycol) (Tg) side chains adopted the same conformation in polar solvents. The fact that the oligomers with the same backbone manifested a similar folded conformation independent of side chains and the nature of the solvent confirmed the concept that the driving force for folding was the intramolecular aromatic stacking and solvophobic interactions. Although all were capable of inducing folding, different solvents were shown to bestow slightly varied folding stability. The chain‐length dependence study revealed a nonlinear correlation between the folding stability with backbone chain length. A critical size of approximately 10 PE units was identified for the system, beyond which folding occurred. This observation corroborated the helical nature of the folded structure. Remarkably, based on the absorption and emission spectra, the effective conjugation length of the system extended more effectively under the folded state than under random conformations. Moreover, as evidenced by the optical spectra and dynamic light‐scattering studies, intermolecular association took place among the helical oligomers with Tg side chains in aqueous solution. The demonstrated ability of such a conjugated foldamer in self‐assembling into hierarchical supramolecular structures promises application potential for the system.     

The energy landscape of unsolvated peptides: helix formation and cold denaturation in Ac-A4G7A4 + H+

Ion mobility measurements and molecular dynamics simulations were performed for unsolvated A4G7A4 + H+ and Ac-A4G7A4 + H+ (Ac = acetyl, A = alanine, G = glycine) peptides. As expected, A4G7A4 + H+ adopts a globular conformation (a compact, random-looking, three-dimensional structure) over the entire temperature range examined (100-410 K). Ac-A4G7A4 + H+ on the other hand is designed to have a flat energy landscape with a marginally stable helical state. This peptide shows at least four different conformations at low temperatures (<230 K). The two conformations with the largest cross sections are attributed to - and partial -helices, while the one with the smallest cross section is globular. The other main conformation may be partially helical. Ac-A4G7A4 + H+ becomes predominantly globular at intermediate temperatures and then becomes more helical as the temperature is raised further. This unexpected behavior may be due to the helix having a higher vibrational entropy than the globular state, as predicted by some recent calculations (Ma, B.; Tsai, C.-J.; Nussinov, R. Biophys. J. 2000, 79, 2739-2753).