Modification of the electrokinetic properties of reversible electrophoresis gels for the separation and preparation of DNA

The effect of adding linear polymers to a novel reversible electrophoretic was measured. Reversible gels are formed using the polyanionic carbohydrate polymer, gellan gum. Gellan gum forms strong stable gels in the presence of divalent cations or diamines. The gels are reversible (return to solution) by changing the ionic environment or pH. Gellan gum is an anionic polymer, and the electrophoresis gels have considerable electroosmotic flow (EOF) toward the negative electrode. We measured the EOF in gellan gum electrophoresis gels as a function of gel concentration, buffer composition, and linear polymer additive. The linear polymers used in this study were polyethylene oxide and hydroxyethyl cellulose. Both polymers reduced EOF in the gels, in a manner dependent on molecular weight. Polymers with high molecular weight were more effective at reducing EOF. The addition of polymers increased the resolution of low molecular weight DNA. Native gellan gum resolved DNA from approx 50,000 to 1000 bp. Addition of the polymers resolved DNA down to approx 50 bp, in some instances. The influence of the polymers on circular plasmid DNA was also investigated. Addition of high molecular weight polyethylene oxide reduced the electrophoretic mobility of the nicked circular form compared to the supercoiled form.     

Small angle x-ray scattering study of local structure and collapse transition of (1,3)-beta-D-glucan-chitosan gels

Scleroglucan is a (1,3)-beta-D-glucan polysaccharide produced by the fungus Sclerotium. Dissolved in water at room temperature it adopts a linear, rigid, triple helical structure. Gelation of scleroglucan can be obtained by Schiff-base formation between partly periodate oxidized scleroglucan and the primary amine groups of chitosan. The scleraldehyde-chitosan gels exhibit a collapse transition when exposed to volume fractions of isopropanol, Wp, larger than 65%. The aim of the present study is to provide structural information concerning the local polymer distribution and the collapse transition in (1,3)-beta-D-glucan-chitosan gels. Small angle x-ray scattering was used to investigate solutions and gels of scleroglucan in water, as well as in an aqueous mixture containing 65% isopropanol. The results reveal that in aqueous solution, the polysaccharide scleroglucan chains have an approximately cylindrical cross section of external diameter close to 17 A. The gels display the same local structure, but form clusters on a longer distance scale. For the collapsed gels in the water-isopropanol mixture, partial phase separation occurs in which ordered domains of approximate size of 110 A develop. This study indicates that local ordering in liquid-crystalline-type domains is a possible molecular mechanism contributing to the collapse of gels composed of semiflexible polymers. The triple helical structure of the molecule appears not to be conserved in the majority phase in this solvent, but it is conserved in the liquid crystalline domains.     

The effect of riboflavin-photoinduced degradation of alginate matrices on the diffusion of poly(oxyethylene) probes in the polymer network

The effect of irradiation, in the wavelength range of 310-800 nm, on the tracer diffusion of poly(oxyethylene) (POE) of different molecular weights embedded in various alginate matrices with the photosensitizer riboflavin (RF) present, has been investigated with the aid of pulsed field gradient spin-echo NMR (PGSE-NMR). Both alginate solutions of different polymer concentration were studied as well as corresponding acid gels of alginate produced by introduction of different amount of glucono-δ-lactone (GDL). In 2 wt.% alginate solutions, the values of the tracer diffusion coefficient suggest a strong obstruction effect as the probe molecular weight increases. Faster probe diffusion was observed for the irradiated samples, which indicates a photochemical scission of the polymer chains and the formation of a fragmented polymer network that facilitates the migration of the tracer chains. A semidilute alginate/RF solution was transformed into a gel by adding sufficient amount of GDL. GDL lowers the pH of the solution under the pK_a of alginate, favouring intermolecular associations and the evolution of a less homogeneous network with more open structure. Therefore, the POE chains were shown to diffuse faster in the acid gel matrix than in the corresponding more homogeneous alginate solutions. The photochemically induced cleavage again promoted faster migration of the probe chains in the irradiated samples. The probe diffusion of the eight-arm star-shaped POE sample revealed an augmented obstruction effect with increasing alginate concentration and higher values of the diffusion coefficient were found in gels. The evolution of a tighter network inhibits the diffusion of the probe molecules. At lower alginate concentrations the values of the tracer diffusion coefficients are higher for the irradiated samples than for the non-exposed systems.     

Gel permeation chromatography. I. A new method for molecular weight distribution of high polymers

Polystyrene gels crosslinked in the presence of dilucnts have been made in fine-mesh bead form suitable for packing into chromatographic columns. A series of narrow molecular weight range polymer fractions was eluted through such columns with aromatic and chlorinated solvents. Effluent concentrations were detected and recorded by a continuous differential refractometer. The fractions were shown to be efficiently separated. Columns capable of separating adjacent polymeric samples of high molecular weight were prepared from gels crosslinked in the presence of large amounts of diluents having little or no solvent action on polystyrene. Smaller proportions of diluents and those with more solvent action yielded columns with lower molecular weight permeability limits. Such studies provided a unique quantitative view of the topology of the gels. They also demonstrated that rapid repetitive molecular weight distribution data can be obtained in this way on polymers for which solvents compatible with the gels are available.     

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for polymer analysis: solvent effect in sample preparation

The success of matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry for the characterization of polymer structures and for the determination of average molecular weights and distributions depends on the use of a proper sample/matrix preparation protocol. This work examines the effect of solvents, particularly solvent mixtures, used to prepare polymer, matrix, and cationization reagent solutions, on MALDI analysis. It is shown that the use of solvent mixtures consisting of polymer solvents does not have a significant effect on the molecular weight determination of polystyrene 7000 and poly(methyl methacrylate) 3750. However, solvent mixtures containing a polymer nonsolvent can affect the signal reproducibility and cause errors in average weight measurement. This solvent effect was further investigated by using confocal laser fluorescence microscopy in conjunction with the use of a fluorescein-labeled polystyrene. It is demonstrated that sample morphology and polymer distribution on the probe can be greatly influenced by the type of solvents used. For sample preparation in MALDI analysis of polymers, it is important to select a solvent system that will allow matrix crystallization to take place prior to polymer precipitation. The use of an excess amount of any polymer nonsolvent should be avoided.     

逆流法对凝胶色谱峰加宽效应的研究

在以无孔玻璃珠为填料的色谱柱上研究了流动相中的分离能力和峰加宽效应。得到一定的分离能力。根据Kelley和Billmeyer描述流动相中峰加宽效应的理论,塔板高度和溶液的分子量有关而和分子量分布无关。但实验表明,对于具有相同分子量,但分子量分布不同的样品峰宽不同。苯的逆流峰加宽因子h稍大于直流峰加宽因子h′。产生这个差别的原因可以用在逆转过程中流速场受到干扰来解释。 在以多孔硅胶为填料的柱中对一系列不同分子量、分子量分布和化学结构的样品考察了逆流峰加宽因子,h,和淋出体积,Ve,之间的关系。实验表明h和Ve之间的关系具有普适性,这个结果和Tung的一致。在多孔填料柱上对苯同样得到h>h′。这个结果意味着用逆流法得到的h来校正GPC体系造成的峰加宽稍嫌不够。 只有对于分子量分布很窄的样品,其逆流淋出曲线的形状才非常接近高斯分布。     

Controlled production of spruce cellulose gels using an environmentally “green” system

Stable spruce cellulose suspensions were generated in NaOH/urea aqueous solutions and used to make thermally induced gels with various swelling ratios and compressive strengths. Wood cellulose cannot be easily dissolved in water or any common organic solvent due to its high molecular weight, which largely limits its applications. Spruce cellulose was hydrolyzed by diluted sulfuric acid of various concentrations and hydrolysis times. The dissolution of these partially degraded samples was investigated in a NaOH/urea aqueous solution system considered environmentally “green.” The effects of acid hydrolysis on the structure and properties of subsequent thermally induced gels were examined using scanning electron microscopy, swelling and re-swelling experiments, and mechanical testing. The molecular weight of spruce cellulose was significantly reduced by acid hydrolysis, whereas its crystallinity slightly increased because of the removal of amorphous regions. All samples could be partially dissolved in the NaOH/urea aqueous solution and formed stable suspensions. Hydrolyzed cellulose samples with lower molecular weight exhibited a higher solubility. Rheological experiments showed these cellulose suspensions could form gels easily upon heating. A porous network structure was observed in which dissolved cellulose was physically crosslinked upon heating and then regenerated to form a three-dimensional network, where the dispersed swollen cellulose fibers filled spaces to reinforce the structure. The swelling behavior and mechanical properties of these ‘matrix-filler’ gels could be controlled by varying the mild acid hydrolysis conditions, which adjusts their degree of solubility. This research provides several opportunities for manufacturing wood cellulose based materials.     

MISCIBILITY AND MORPHOLOGY OF THIN FILMS OF BLENDS OF POLYSTYRENE WITH BROMINATED POLYSTYRENES： EFFECTS OF VARYING THE MOLECULAR WEIGHT, BROMINATION DEGREE AND ANNEALING

Thin films of incompatible polymer blends can form a variety of structures during preparation and subsequent annealing process. For the polymer blend system consisting of polystyrene and poIy(styrene-co-p-bromo-styrene), i.e., PS/PBrxS, its compatibility could be adjusted by varying the degree of bromination and the molecular weight of both components comprised, in this paper, surface chemical compositions of the cast and the annealing films were investigated by X-ray photoelectron spectroscopy (XPS) and contact angle measurement; meanwhile, surface topographical changes are followed by atomic force microscopy (AFM). In addition, substantial attention was paid to the effect of annealing on the morphologic variations induced by phase separation and/or dewetting of the thin film. Moreover, the influences of the molecular weight, Aw, as well as the brominated degree, x%, on the sample surface are explored systematically, and the corresponding observations are explained in virtue of the Flory-Huggins theory, along with the dewetting of the polymer thin film.     

Biodegradable polymeric films based on microbial poly(3-hydroxybutyrate). Effect of gamma-radiation on mechanical properties and biodegradability

Two samples of microbial poly(3-hydroxybutyrate) (PHB) having different molecular weight were used for the preparation of films to be exposed to gamma radiation. The effect of radiation on those samples with high molecular weight increased the fragility of the film. Biodegradability increased with time and reached about 95% after 18 days. Weight-loss of both samples (irradiated and non-irradiated) after 23 days were 100%, for those films with molecular weight of 265 kD.     

Intercalated linear low density polyethylene (LLDPE)/clay nanocomposites prepared with oxidized polyethylene as a new type compatibilizer: Structural, mechanical and barrier properties

In this study, the use of low molecular weight oxidized polyethylenes (OxPE) with different molecular weight and acid number as a new type of compatibilizer in low density polyethylene (LLDPE)/org-clay nanocomposite preparation was examined. Nanocomposites having 5 phr (part per hundred) org-clay were prepared by melt processing. The effect of compatibilizer polarity and clay dispersion on the thermal, mechanical and barrier properties of the nanocomposites was investigated. It was observed that oxidized polyethylenes created a strong interfacial interaction between the clay layers and polymer phase based on the analysis of the linear viscoelastic behavior of the samples by small amplitude oscillatory rheometry. We showed that physical performance of the nanocomposites is not only affected by clay dispersion but also both melt viscosity and polarity of the oxidized polyethylene compatibilizers. It was found that oxygen permeability values of the nanocomposite samples prepared with the oxidized polyethylenes were lower than that of a sample prepared with conventional compatibilizer, maleic anhydride grafted polyethylene (PE-g-MA).     

Effects of Hofmeister Anions on the LCST of PNIPAM as a Function of Molecular Weight

The effect of a series of sodium salts on the lower critical solution temperature (LCST) of poly(N-isopropylacrylamide), PNIPAM, was investigated as a function of molecular weight and polymer concentration with a temperature gradient microfluidic device under a dark-field microscope. In solutions containing sufficient concentrations of kosmotropic anions, the phase transition of PNIPAM was resolved into two separate steps for higher molecular weight samples. The first step of this two step transition was found to be sensitive to the polymer's molecular weight and solution concentration, while the second step was not. Moreover, the binding of chaotropic anions to the polymer was also influenced by molecular weight. Both sets of results could be explained by the formation of intramolecular and intermolecular hydrogen-bonding between polymer chains. By contrast, the hydrophobic hydration of the isopropyl moieties and polymer backbone was found to be unaffected by either the polymer's molecular weight or solution concentration.     

Electrophoretic mobility of poly(acrylic acid)-coated alumina particles

The effect of poly (acrylic acid) (PAA) adsorption on the electrokinetic behavior of alumina dispersions under high pH conditions was investigated as a function of polymer concentration and molecular weight as well as the presence, concentration and ion type of background electrolyte. Systems of this type are relevant to nuclear waste treatment, in which PAA is known to be an effective rheology modifier. The presence of all but the lowest molecular weight PAA studied (1800) led to decreases in dynamic electrophoretic mobility at low polymer concentrations, attributable to bridging flocculation, as verified by measurements of particle size distribution. Bridging effects increased with polymer molecular weight, and decreased with polymer concentration. Increases in background electrolyte concentration enhanced dynamic electrophoretic mobility as the polymer layers were compressed and bridging was reduced. Such enhancements were reduced as the cation was changed from K(+) to Na(+) to Cs(+).     

Synthesis and characterization of phthalazinone‐based poly(aryl ether ketone) derived from 4,4′‐dichlorobenzophenone

As distinguished from the conventional preparation of poly(aryl ether ketone)s utilizing 4,4′‐difluorobenzophenone, a novel synthetic method of high molecular weight poly(phthalazinone ether ketone) derived from 4,4′‐dichlorobenzophenone was studied. Reaction conditions to get high molecular weight polymer were investigated in details. Experimentally, sulfolane was chosen as the reaction media and high molecular weight polymer could be obtained in 7–8 hr at 210°C. The cyclic oligomers in the polymer product reduced to below 3.0% when the concentration of the reactant is 1.6–1.7 g/ml. Fourier transform infrared (FT‐IR), ¹H NMR, and elemental analysis were used to confirm the structure of the obtained polymer. The amorphous polymer showed reasonable solubility in selective solvent, such as chloroform and N‐methyl‐2‐pyrrolidone, and tough, flexible, and transparent thin film can be readily prepared from their N‐methyl‐2‐pyrrolidone solution. The obtained polymer showed high glass transition temperature (T_g) up to 261°C detected by differential scanning calorimetry (DSC), and the temperature of 5% weight loss under nitrogen higher than 500°C detected by thermal gravimetric analysis (TGA), indicating its excellent thermal stability. Copyright © 2011 John Wiley & Sons, Ltd.     

Responsive polymer gels: double-stranded versus single-stranded DNA

Cross-linking of polyelectrolytes such as DNA gives gels that are osmotically highly swollen but contract upon addition of electrolytes and, in particular, upon association of oppositely charged cosolutes with the polyelectrolyte chain. The deswelling behavior of cross-linked DNA gels thus reflects the DNA-cosolute interactions and provides a basis for the development of responsive DNA formulations. Gels of both single- and double-stranded DNA have interesting applications, and a comparison between them provides the basis for understanding mechanisms. Denaturation of cross-linked ds-DNA gels was induced by heating them above the melting temperature and then cooling. This process, studied by fluorescence using ethidium bromide, appeared to be reversible when a heating/cooling cycle was performed. The swelling behavior upon addition of different cosolutes, such as metal ions, polyamines, charged proteins, and surfactants, was investigated for different DNA gel samples, including long and short ds-DNA and long and short ss-DNA. The DNA molecular weight was found to have only a slight effect on the deswelling curves, whereas conformation exhibited a pronounced effect. In general, single-stranded DNA gels exhibited a larger collapse in the presence of cations than did double-stranded DNA. This difference was more pronounced with surfactants than with the other cosolutes investigated. The difference between double- and single-stranded DNA was attributed to differences in linear charge density, chain flexibility, and hydrophobicity. For surfactants with different chain lengths, the swelling behavior displayed by ss-DNA can be interpreted in terms of an interplay between hydrophobic and electrostatic interactions, the latter being influenced by polymer flexibility. Increasing hydrophobicity of the network leads to a decreased critical aggregation concentration (cac) for the surfactant/gel complex, as a result of the strengthened hydrophobic attractive force between the surfactant and the gel chain. The swelling of DNA gels appears to be reversible and to be independent of DNA conformation. Surfactant-induced deswelling of DNA gels under some conditions appears to be quite homogeneous, whereas under other conditions, there is a separation into a collapsed region in the outer parts of the gel sample and an inside swollen part. Such "skin" formation is quite different for ss- and ds-DNA, with ss-DNA giving more pronounced skin formation over a wider range of binding ratio, beta. For example, no macroscopic separation into collapsed and swollen regions was observed at intermediate degrees of binding for ds-DNA gels, whereas a dense surfactant-rich surface phase (skin) was found to coexist with a swollen core network for ss-DNA gels with beta>0.5. One explanation for this difference is the large deformation energy required for the compression of the very stiff ds-DNA chains.     

Long-Chain Alkylsilane-Modified Porous Silica Beads as GPC Packings

Abstract

A series of silica gels having various molecular weight exclusion limits has been modified by reaction with octadecyltrichlorosilane. Toluene being used as moving phase and hydroxyl-end blocked polydimethylsiloxane as solute, the chromatographic process on these modified silica packings is mainly controlled by size exclusion; an additional absorptive retention can still be observed with the low molecular species. Thus, calibration in this case should be performed using standard samples of the specific polymer to be determined.     

Polymer induced changes of the crystallization scenario in suspensions of hard sphere like microgel particles

We investigated the crystallization scenario of highly cross linked polystyrene particles dispersed in the good solvent 2-ethylnaphtalene and their mixtures with non-adsorbing low molecular weight polysterene polymer using time resolved static light scattering. The samples were prepared slightly below the melting volume fraction of the polymer free system. For the polymer free samples, we obtained polycrystalline solids via crystallization scenario known from hard sphere suspensions with little competition of wall crystal formation. Addition of non-adsorbing low molecular weight polystyrene polymer leads to a considerably slowing down of the bulk crystallization kinetics. We observed a delay of the precursor to crystal conversion for the bulk crystallization while the induction times for the wall nucleation are reduced. The increased polymer concentration thus shifts the balance between the two competing crystallization pathways giving the possibility to tune the relative amount of wall based crystals.     

Conditions for Shake-Gel Formation: The Relationship between the Size of Poly(Ethylene Oxide) and the Distance between Silica Particles

Colloidal silica suspensions are widely used in many fields, including environmental restoration, oil drilling, and food and medical industries. To control the rheological property of suspensions, poly(ethylene oxide) (PEO) polymers are often used. Under specific conditions, the silica-PEO suspension can create a phenomenon called a shake-gel. Previous works discussed the conditions necessary to form a shake-gel and suggested that the bridging effect of the polymer is one of the important mechanisms for shake-gel formation. However, we noted that the influence of PEO size compared to the separation distance between silica particles regarding shake-gel formation has not been systematically investigated, while the PEO size should be larger than the particle–particle separation distance for polymer bridging in order to form gels. Thus, we conducted a series of experiments to examine the effects of the radius of gyration of the PEO and the distance between the silica particles by controlling the PEO molecular weight and the silica concentration. Our results elucidated that the radius of gyration of the PEO should be 2.5 times larger than the distance between the silica surfaces in order to promote the formation of a shake-gel. This result supports the hypothesis that the bridging effect is the main cause of shake-gel formation, which can help us to understand the conditions necessary for shake-gel preparation.     

Well-defined liquid crystal gels from telechelic polymers

Well-defined liquid crystal networks with controlled molecular weight between cross-links and cross-link functionality were prepared by "click" cross-linking of telechelic polymers produced by ring-opening metathesis polymerization (ROMP). The networks readily swell in a small molecule liquid crystal, 5CB, to form LC gels with high swelling ratios. These gels exhibit fast, reversible, and low-threshold optic switching under applied electric fields when they are unconstrained between electrodes. For a given electric field, the LC gels prepared from shorter telechelic polymers showed a reduced degree of switching than their counterparts made from longer polymer strands. The reported approach provides control over important parameters for LC networks, such as the length of the network strands between cross-links, cross-linker functionality, and mesogen density. Therefore, it allows a detailed study of relationships between molecular structure and macroscopic properties of these scientifically and technologically interesting networks.     

Drying Study of Siloxane-PPG Nanocomposites

This is a study of the structural transformations occurring in hybrid siloxane-polypropyleneglycol (PPG) nanocomposites, with different PPG molecular weight, along the drying process. The starting materials are wet gels obtained by the sol-gel procedure using as precursor the 3-(trietoxysilyl)propylisocyanate (IsoTrEOS) and polypropylenglycol bis(2-amino-propyl-ether) (NH₂-PPG-NH₂). The shrinkage and mass loss measurements were performed using a temperature-controlled chamber at 50°C. The nanostructural evolution of samples during drying was studied in situ by small angle x-ray scattering (SAXS). The experimental results demonstrate that the drying process is highly dependent on the molecular weight of polymer. After the initial drying stage, the progressive emptying of pores leads to the formation of a irregular drying front in gels prepared from PPG of high molecular weight, like 4000 g/mol. As a consequence, an increase of the SAXS intensity due to the increase of electronic density contrast between siloxane clusters and polymeric matrix is observed. For hybrids containing PPG of low molecular weight, the pore emptying process is fast, leading to a regular drying front, without isolated nanopockets of solvents. SAXS intensity curves exhibit a maximum, which was associated to the existence of spatial correlation of the silica clusters embedded in the polymeric matrix. The spatial correlation is preserved during drying. These results also reveal that the structural transformation during drying is governed by capillary forces and depends on the entanglement of polymer chains.     

Swelling of polyacrylamide gels in polyacrylamide solutions

Swelling behavior of polyacrylamide (PAAm) and polyacrylamide-co-polyacrylic acid (PAAm-co-PAAc) gels was investigated in aqueous solutions of monodisperse PAAms with molecular weights (M_w) ranging from 1.5 × 10³ to 5 × 10⁶ g/mol. The volume of the gels decreases as the PAAm concentration in the external solution increases. This decrease becomes more pronounced as the molecular weight of PAAm increases. The classical Flory–Huggins (FH) theory correctly predicts the swelling behavior of nonionic PAAm gels in PAAm solutions. The polymer–polymer interaction parameter χ₂₃ was found to decrease as the molecular weight of PAAm increases. The swelling behavior of PAAm-co-PAAc gels in PAAm solutions deviates from the predictions of the FH theory. This is probably due to the change of the ionization degree of AAc units depending on the polymer concentration in the external solution. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 1313–1320, 1998