Partial crystalline transformation of solvated cellulose IIII crystals, reproduced by theoretical calculations

In hot-water molecular dynamics simulation at 370 K, four cellulose III_I crystal models, with different lattice planes and dimensions, exhibited partial crystalline transformations of (1 ?1 0) chain sheets, in which hydroxymethyl groups were irreversibly rotated from gt into tg conformations, accompanied by hydrogen-bond exchange from the original O3–O6 to cellulose-I-like O2–O6 bonds. The final hydrogen-bond exchange ratio was about 95 % for some of the crystal models after 50 ns simulation. The corrugated (1 ?1 0) chain sheet was converted to a cellulose-I-like flat chain sheet with a slightly right-handed twist. The 3D structures of the three types of isolated chain sheet models were optimized using density functional theory calculations to compare their stabilities without crystal packing forces. The cellulose Iβ (1 0 0) models were more stable than the cellulose III_I (1 ?1 0) models. The optimized structure of cellulose III_I (1 0 0) models deviated largely from the initial sheet form. It was proposed to the crystalline transformation from cellulose III_I to Iβ that conversion of the chain sheet structure first take place, followed by sliding of the chain sheet along the fiber axis.     

Prediction of cellulose nanotube models through density functional theory calculations

We report the generation of a nano-scale tubular structure of cellulose molecules (CelNT), through density functional theory (DFT) calculations. When a cellulose III_I (1 0 0) chain sheet model is optimized by DFT calculations, the sheet models spontaneously roll into tubes. The oligomers arrange in a right-handed, four-fold helix with one-quarter chain staggering, oriented with parallel polarity similar to the original crystal structure. Based on a one-quarter chain staggering relationship, six large CelNT models, consisting of 16 cellulose chains with DP = 80, are constructed by combinations of two types of chain polarities and three types of symmetry operations to generate a circular arrangement of molecular chains. All six CelNT models are examined by molecular dynamics (MD) calculations in chloroform. While four CelNT models retain a tubular form throughout MD calculations, the remaining two deform. 3D-RISM theory model is used to estimate the solvation free energies of the four CelNT models. The results suggest that the CelNT model with a chain arrangement of parallel polarity and right-handed helical symmetry forms the most stable tube structure.     

Cellulose polymorphism study with sum-frequency-generation (SFG) vibration spectroscopy: identification of exocyclic CH2OH conformation and chain orientation

Sum-frequency-generation (SFG) vibration spectroscopy is a technique only sensitive to functional groups arranged without centrosymmetry. For crystalline cellulose, SFG can detect the C6H₂ and intra-chain hydrogen-bonded OH groups in the crystal. The geometries of these groups are sensitive to the hydrogen bonding network that stabilizes each cellulose polymorph. Therefore, SFG can distinguish cellulose polymorphs (I_β, II, III_I and III_II) which have different conformations of the exocyclic hydroxymethylene group or directionalities of glucan chains. The C6H₂ asymmetric stretching peaks at 2,944 cm^?1 for cellulose I_β and 2,960 cm^?1 for cellulose II, III_I and III_II corresponds to the trans-gauche (tg) and gauche-trans (gt) conformation, respectively. The SFG intensity of the stretch peak of intra-chain hydrogen-bonded O–H group implies that the chain arrangement in cellulose crystal is parallel in I_β and III_I, and antiparallel in II and III_II.     

Structural stability of the solvated cellulose IIII crystal models: a molecular dynamics study

Molecular dynamics (MD) simulations of cellulose III_I crystal models have been carried out. The crystal models were composed by either 24 or 48 cellooligomers consisting of either 20 or 40 residues and were surrounded by waters in a periodic boundary box. Two base plane types differing in a constituent crystal lattice plane, (0 −1 0) × (0 1 0) and (1 0 0) × (0 1 0), were additionally considered. Among the resulting eight crystal models, an overall structure conversion was observed for the seven models. The final structures had a triclinic-like chain arrangement involving one-quarter staggering chains with respect to its axis. The successive, local transformation involving cooperative bends in cellooligomers was observed during the structure conversion. Only the 48 × 20-mer model having the (0 −1 0) lattice plane retained the original crystal structure throughout a 2.5-ns simulation. The MD simulations with an implicit solvent system and a vacuum system were also performed to asses a solvent effect on the structure conversion.     

The structure of the complex of cellulose I with ethylenediamine by X-ray crystallography and cross-polarization/magic angle spinning 13C nuclear magnetic resonance

X-ray crystallographic and cross-polarization/magic angle spinning ¹³C nuclear magnetic resonance techniques have been used to study an ethylenediamine (EDA)-cellulose I complex, a transient structure in the cellulose I to cellulose III_I conversion. The crystal structure (space group P2 ₁ ; a = 4.546 Å, b = 11.330 Å, c = 10.368 Å and γ = 94.017°) corresponds to a one-chain unit cell with one glucosyl residue in the asymmetric unit, a gt conformation for the hydroxymethyl group, and one EDA molecule per glucosyl residue. Unusually, there are no O–H···O hydrogen bonds between the cellulose chains; the chains are arranged in hydrophobic stacks, stabilized by hydrogen bonds to the amine groups of bridging EDA molecules. This new structure is an example of a complex in which the cellulose chains are isolated from each other, and provides a number of insights into the structural pathway followed during the conversion of cellulose I to cellulose III_I through EDA treatment.     

The role of hydroxyl groups in interchain interactions in cellulose Iα and Iβ

Complex networks of hydrogen bonds within the cellulose I_α and I_β contribute greatly to cellulose's anisotropic physical properties such as material stiffness. The interchain hydrogen bonding interactions through hydroxyl groups are isolated in each of the three lattice planes of the adjacent chains within the unit cell of two allomorphs of natural cellulose. In our density function theory study with dispersion corrected Perdew–Burke–Ernzerhof (PBE‐D2) functional, these hydroxyl groups participate in strong hydrogen bonding interactions (?24.8 and ?24.8 kcal/mol for cellulose I_α and I_β, respectively) in the side‐to‐side lattice plane. Unexpectedly, the hydroxyl groups also participate significantly in hydrogen bonding interactions (?11.0 and ?12.4 kcal/mol for cellulose I_α and I_β, respectively) in one of the diagonal lattice planes in both cellulose I_α and I_β. Both PM7 and PBE‐D2 method predict that the overall interaction is asymmetric and stronger in the right diagonal lattice plane. While hydrogen bonding interactions are strongest in side‐to‐side lattice plane as expected, the role of hydrogen bonding interactions for keeping the sheet together is more significant than previously thought.     

IR and Raman spectral and X-ray structural studies of polymorphic forms of sulfamethoxazole

The crystal structure of the polymorphic form III (hemihydrate) of sulfamethoxazole (SMZ) was determined to exist in both the E- and Z-forms by X-ray analysis and was compared with the polymorphic forms I and II which are known to exist in the E-form. IR spectra of I–III and their corresponding forms I_D–III_D which contain the deuterated amino and amido groups and D₂O and Raman spectra of I–III have been measured. For I–III, assignment of the stretching vibration [ν(NH) and ν(CH)] bands of amino and amido groups and the CH bond of the isoxazole ring involved in the inter-molecular hydrogen bonds has been proposed based on consideration of the IR and Raman spectra and the results of X-ray analysis. A relationship was established between the relative intensity and wavenumbers for the ν(CH) band in the inter-molecular C(sp²)H⋯X hydrogen bond of the E-form.     

Elastic modulus of the crystalline regions of cellulose polymorphs

The elastic modulus E_l of the crystalline regions of cellulose polymorphs in the direction parallel to the chain axis was measured by x-ray diffraction. The E_l values of cellulose I, II, III_I, III_II, and IV_I were 138, 88, 87, 58, 75 GPa, respectively. This indicates that the skeletons of these polymorphs are completely different from each other in the mechanical point of view. The crystal transition induces a skeletal contraction accompanied by a change in intramolecular hydrogen bonds, which is considered to result in a drastic change in the E_l value of the cellulose polymorphs. © 1995 John Wiley & Sons, Inc.     

Structural features and N-H…O and O-H…O hydrogen-bonded supramolecular frameworks in 2-methylanilinium hydrogen DL-malate hydrate, 4-methoxyanilinium and 4-methylanilinium hydrogen DL-malate salts

In the crystal structure of 2-methylanilinium hydrogen DL-malate hydrate (I), an additional water molecule is present in asymmetric unit. In the crystal structures of 4-methoxyanilinium hydrogen DL-malate (II) and 4-methylanilinium hydrogen DL-malate (III), the hydrogen malate anions exhibit configurational disorder with major component occupy S-configuration and minor component occupy R-configuration provided both (II) and (III) are prepared from a racemic mixture of DL-malic acid. In crystal structures of compounds (I)–(III), the hydrogen malate anions and anilinium cations from O-H…O and N-H…O hydrogen bonds which exhibit interesting supramolecular frameworks. In compound (I), the N-H…O and O-H…O hydrogen-bonded anionic-cationic framework form two-dimensional hydrophilic and hydrophobic layers in which the lattice water molecules are embedded in hydrophilic layers. However, in crystal structures of (II) and (III), the hydrogen DL-malate anions form two-dimensional anionic substructure through O-H…O hydrogen bond, in which the anilinium cations are anchored through N-H…O hydrogen bonds.

     

Molecular dynamics simulation of dissociation behavior of various crystalline celluloses treated with hot-compressed water

The dissociation behavior of the crystalline cellulose polymorphs I_β, II, III_I, and IV_I (Cell I_β, etc.) at 503 K and 100 bar was studied by molecular dynamics simulation, and the mechanism of the experimental liquefaction during treatment with hot-compressed water was elucidated. The results showed that the mini-crystals of Cell I_β and Cell IV_I exhibited similar resistance to dissociation, which implies the occurrence of crystal transformation from Cell IV_I to Cell I. On the other hand, the mini-crystal of Cell II gradually dissociated into the water environment with the progress of time in the simulation. The water molecules gradually penetrated the Cell II crystal, especially along the (1 \(\overline{1}\) 0) crystal plane. In contrast, the dissolution behavior differed for the surface and the core areas of the mini-crystal of Cell III_I. The cellulose chains on the surface were dissociated into the water environment, whereas the ordered structure of the chains in the core region was maintained for the entire simulation period. The detailed investigation showed that the core part of Cell III_I was transformed into Cell I at an early stage of the simulation: Cell I is resistant to dissociation of the structure even in the hot-compressed water environment. It can be confirmed that the stability of these four crystals under high temperature and pressure conditions follows the order: Cell II < III_I < IV_I ≈ I_β.     

Quantifying the influence of dispersion interactions on the elastic properties of crystalline cellulose

Dispersion and electrostatic interactions both contribute significantly to the tight assembly of macromolecular chains within crystalline polysaccharides. Using dispersion-corrected density functional theory (DFT) calculation, we estimated the elastic tensor of the four crystalline cellulose allomorphs whose crystal structures that are hitherto available, namely, cellulose Iα, Iβ, II, III_I. Comparison between calculations with and without dispersion correction allows quantification of the exact contribution of dispersion to stiffness at molecular level.

     

Lateral thermal expansion of cellulose Iβ and IIII polymorphs

Measurements of the thermal expansion coefficients (TECs) of cellulose crystals in the lateral direction are reported. Oriented films of highly crystalline cellulose I_β and III_I were prepared and then investigated with X‐ray diffraction at specific temperatures from room temperature to 250 °C during the heating process. Cellulose I_β underwent a transition into the high‐temperature phase with the temperature increasing above 220–230 °C; cellulose III_I was transformed into cellulose I_β when the sample was heated above 200 °C. Therefore, the TECs of I_β and III_I below 200 °C were measured. For cellulose I_β, the TEC of the a axis increased linearly from room temperature at α_a = 4.3 × 10^?5 °C^?1 to 200 °C at α_a = 17.0 × 10^?5 °C^?1, but the TEC of the b axis was constant at α_b = 0.5 × 10^?5 °C^?1. Like cellulose I_β, cellulose III_I also showed an anisotropic thermal expansion in the lateral direction. The TECs of the a and b axes were α_a = 7.6 × 10^?5 °C^?1 and α_b = 0.8 × 10^?5 °C^?1. The anisotropic thermal expansion behaviors in the lateral direction for I_β and III_I were closely related to the intermolecular hydrogen‐bonding systems. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 1095–1102, 2002     

Syntheses and luminescence of three lanthanide complexes constructed by flexible carboxylate ligand

Three new complexes, namely {[Ln(L)₃(2,2′-Bipy)] _n · H₂O} (Ln = Pr (I), Sm (II), and Nd (III)) (HL = 3-(2-hydroxyphenyl)propanoic acid), have been synthesized and structurally characterized. The structural determinations indicated (CIF files CCDC nos. 1472729 (I), 1472730 (II), 1472734 (III)) that I–III have similar dinuclear structures, which can be further linked into 2D sheet via the hydrogen bond interactions. Furthermore, the luminescent properties of I–III show the strong emissive power and feature.     

Mixed-ligand complexes of alkaline-earth metal trifluoroacetates with monoethanolamine

The mixed-ligand complexes of the formula [M(CF₃COO)₂(MEA) _n ] (MEA is monoethanolamine; M = Ca (I) and Sr (II), n = 1.5; M = Ba (III), (n = 1) were obtained from appropriate salts M(CF₃COO)₂ · nH₂O and MEA in ethanol. Complexes I–III were characterized by elemental analysis data and IR spectra. Slow crystallization of a solution of complex III in air gave a single crystal of the formula [Ba(CF₃COO)₂(MEA)(H₂O)], which is a coordination polymer with C.N.(Ba) 9 (X-ray diffraction data). Thermal analysis showed that complexes I–III decompose under argon and in air to the corresponding fluorides at T < 400°C.     

Syntheses and structures of nine-coordinate K3[DyIII(nta)2(H2O)]·5H2O and eight-coordinate (NH4)3[DyIII(nta)2] complexes

K₃[Dy^III(nta)₂(H₂O)]·5H₂O and (NH₄)₃[Dy^III(nta)₂] have been synthesized in aqueous solution and characterized by IR, elemental analysis and single-crystal X-ray diffraction techniques. In K₃[Dy^III(nta)₂(H₂O)]·5H₂O the Dy^III ion is nine coordinated yielding a tricapped trigonal prismatic conformation, and its crystal belongs to monoclinic system and C2/c space group. The crystal data are as follows: a = 15.373(5) Å, b = 12.896(4) Å, c = 26.202(9) Å; β = 96.122(5)°, V = 5165(3) ų, Z = 8, D _c = 1.965 g·cm^?3, μ = 3.458 mm^?1, F(000) = 3016, R ₁ = 0.0452 and wR ₂ = 0.1025 for 4550 observed reflections with I ≥ 2σ(I). In (NH₄)₃[Dy^III(nta)₂] the Dy^III ion is eight coordinated yielding a usual dicapped trigonal anti-prismatic conformation, and its crystal belongs to monoclinic system and C2/c space group. The crystal data are as follows: a = 13.736(3) Å, b = 7.9389(16) Å, c = 18.781(4) Å; β = 104.099(3)°, V = 1986.3(7) ų, Z = 2, D _c = 1.983 g·cm^?3, μ = 3.834 mm^?1, F(000) = 1172, R ₁ = 0.0208 and wR ₂ = 0.0500 for 2022 observed reflections with I ≥ 2σ(I). The results indicate that the difference in counter ion also influences coordination numbers and structures of rare earth metal complexes with aminopolycarboxylic acid ligands.     

Synthesis and structural determination of a novel complex [Yb<Superscript>III</Superscript>(HEgta)] · 4H<Subscript>2</Subscript>O in comparison with [Yb<Superscript>III</Superscript>(HEgta)] · 2H<Subscript>2</Subscript>O

One novel ytterbium complex [Yb^III(HEgta)] · 4H₂O (I), where H₄Egta = ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetraacetic acid, has successfully been synthesized by the reaction of Yb₂O₃ with H₄Egta in an aqueous solution after refluxing for 18 h. The crystal and molecular structures were determined by the infrared spectrum and X-ray crystallography. The crystal structural analysis reveals that central Yb(III) in I is eight-coordinated in a geometry of pseudo-square antiprismatic polyhedron by two amine N atoms, two ethylene glycol O atoms, and four carboxyl O atoms from one HEgta ligand and crystallizes in the orthorhombic crystal system with P2₁2₁2₁ space group. The crystal data are as follows: a = 9.4927(8), b = 12.2627(13), c = 18.3657(17) Å, V=2137.9(4) ų, Z = 4, ρ_calcd = 1.934 mg/m³, μ = 4.448 mm^?1, F(000) = 1236, R = 0.0291, and wR = 0.0714 for 8850 observed reflections with I ≥ 2σ(I). In addition, there is a protonated coordinated carboxyl O atom (O(5)) in the [Yb^III(HEgta)] moiety.     

Crystal structures and luminescence of a series of cadmium(II) complexes based on isophorone derivative containing imidazolyl

Three new complexes, [CdL₂(CH₃COO)₂(H₂O)₂] (I), CdL₂Br₂ (II), CdL₂I₂ (III), have been successfully synthesized by self-assembly of corresponding metal salts with (E)-2-(3-(4-(1H-imidazole-1-yl)styryl)-5,5-dimethylcyclohex-2-enylidene)malononitrile (L). The structures of the complexes were determined by single crystal X-ray diffraction analysis (CIF file CCDC nos. 957831 (I), 957792 (II), 957832 (III)). In complex I, central metal is six-coordinated and the crystal packing shows a 3D supramolecular framework. Complexes II and III display the similar 2D supramolecular structures in which the central metals are four-coordination. The luminescent properties were investigated.     

Four novel metal–organic frameworks based on 3,4,7,8-tetramethyl-1,10-phenanthroline: Syntheses,structures, and thermal properties

Four novel metal–organic frameworks, [Cu(Tmp)₂(H₂O)] · NO₃ (I) (Tmp = 3,4,7,8-tetramethyl-1,10-phenanthroline), [Mn(Tmp)₂(H₂O)₂] · 2NO₃ · H₂O (II), [Pb(Tmp)(CH₃COO)₂] · 3H₂O (III) and [Zn(Tmp)₂(H₂O)₂] · 2NO₃ · 2H₂O (IV), have been synthesized and characterized by single crystal X-ray diffraction (CIF files CCDC nos. 88362–88365 for I–IV, respectively), IR spectroscopy, elemental analysis and thermogravimetric analysis. Both I and II complexes are crystallized in monoclinic system with space groups C2/c, P2₁/c, respectively, while III and IV complexes are crystallized in triclinic system with space groups \(P\overline 1 \). Generally, these crystal structures are stabilized by O–H···O hydrogen bonds and π–π interactions between the phenanthroline rings of neighboring molecules. Thermogravimetric analyses of compounds I–IV display considerable thermal stability.     

Dipyridyl-type ligand-directed assembly of three cobalt(II) coordinated polymers based on carboxyphenylpropionate

A series of Co(II)-H₂Cpp coordination polymers incorporating different auxiliary ligands, [Co(Cpp)(Phen)(H₂O)] (I), {[Co(Bipy)(H₂O)₄](Cpp)} _n (II), and [Co(Cpp)(Bds)(H₂O)] _n (III) (H₂Cpp = 3-(4-carboxyphenyl)propionic acid, Phen = 1,10-phenanthroline, Bipy = 4,4′-bipyridyl, and Bds = 4,4′-bipyridyl sulfide), were synthesized by the hydrothermal reaction and characterized by single crystal X-ray diffraction, elemental analysis, IR, and TG. Three complexes display from 0D to 1D different structural features under the regulation of distinguishing dipyridyl-type coligands. Complex I possesses a binuclear Co(II) motif constructed by H₂Cpp and Phen, which further developing a zipper-like 2D layer via H-bonded and π-π stacking interactions. Complex II displays straight Bipy-bridging 1D chain, and further forming a 3D supramolecular structure by hydrogen-bonded interactions. Complex III exhibits 1D double-chain collectively jointed by Cpp and Bds, which further interlinked into a 3D supramolecular architecture by H-bonded interactions.