HCSE method for detection of small carbon–carbon couplings and their signs,comparison with SLAP pulse sequence

Performance of homonuclear coupling sign edited (HCSE) experiment applied to detection of signed carbon–carbon couplings is discussed using a set of already measured samples of nine monosubstituted benzenes. It is shown that coupling sign detection is insensitive to the settings of carbon–carbon polarization transfer delays. The HCSE spectra of ten from the total of 43 measured carbon–carbon couplings were considerably influenced by relaxations and proton–proton strong couplings. These effects are quantitatively discussed. The results of HCSE and SLAP experiments are compared. It is shown that the two methods may complement each other in detection of signed carbon–carbon couplings. Copyright © 2013 John Wiley & Sons, Ltd.     

The hydration of monosaccharides—an NMR study

At temperatures close to 0°C proton exchange between sugar hydroxyl groups and water is slow, and separate proton resonance peaks can be detected for the hydroxyl protons. All are shifted downfield of the water resonance, the anomeric hydroxyl proton shift being the greatest. Axial anomeric hydroxyl protons are shifted less than corresponding equatorial protons. Proton exchange with water is strongly acid and base catalyzed, but, at least in some cases, there seems to be an additional pH-independent mechanism involved. From the temperature effect on the shifts, and the effect of added dimethyl sulfoxide, we conclude that each hydroxyl group is bonded on average to two water molecules. This estimate of the hydration number for monosaccharides is far greater than those previously deduced from relaxation studies. It is suggested that the source of this difference lies in the residence times of the bound water molecules. Shifts of the hydroxyl proton resonances for sugars in methanol are compared with those for aqueous solutions and are found to be very similar. Hence it is concluded that these shifts do not reveal any special effects due to water structure. There are quite marked differences in the shifts for different sugars, and, in particular, the anomeric hydroxyl proton shifts for ketoses are smaller than those for aldoses.Taken as solvation spectra, Part 56.     

四川九节龙中新四糖三萜皂苷结构和核磁共振研究

从四川九节龙(ArdiseapusillaA.DC)的正丁醇提取物中分得一个三萜皂苷。经过测定,它为:3-O-[β-D-吡喃葡萄糖(1→2)][α-L-吡喃鼠李糖(1→3)-β-D-吡喃葡萄糖(1→3)]-α-L-吡喃阿拉伯糖-仙客来亭A,为一新四糖皂苷(1)。糖体间和糖体与苷元间的连接顺序和连接位置采用一维SEMDY和旋转坐标NOE差谱核磁共振新技术相结合的方法进行了研究。结果表明,这一方法用于测定寡糖链结构具有准确、简便、快速等特点,对化合物不需要进行化学降解或衍生化,糖基的重叠^1HNMR信号可以分辨和正确指定。     

Improved pulse sequences for measurement of small long‐range couplings between heteronuclei (29Si?13C) at natural abundance

The gradient pulse sequences for measurement of small long‐range couplings between heteronuclei (²⁹Si? ¹³C) in natural abundance reported to date (INEPT‐(Si,C)gCOSY and INEPT‐(Si,C,Si)HMQC) suffer from significant signal loss when these nuclei (²⁹Si, ¹³C) are coupled through one‐bond couplings to protons. This negative effect can be completely eliminated by using non‐gradient versions (INEPT‐(Si,C)COSY) or by switching proton decoupling off during gradient pulses (modified INEPT‐(Si,C,Si)gHMQC pulse sequence). The beneficial effects of these two approaches on the quality of the spectra are demonstrated here. Copyright © 2009 John Wiley & Sons, Ltd.     

Stereochemical and compositional assignment of acrylonitrile/methyl methacrylate copolymers by DEPT and inverse HECTOR NMR spectroscopy

The acrylonitrile/methyl methacrylate copolymers of different monomer concentration were prepared by photo polymerization using uranyl ion as initiator. The carbon 13 and proton spectra of these copolymers are overlapping and complex. The complete spectral assignment of the ¹³C- and ¹H-NMR spectra were done with the help of Distortionless Enhancement by Polarization Transfer (DEPT) and two dimensional ¹³C–¹H Heteronuclear Single Quantum Correlation (HSQC) experiments. The methylene, methine and the methyl carbon resonances show both stereochemical (triad level) and compositional (dyad, triad, tetrad, pentad and hexad level) sensitivity. 2D Double Quantum Filtered Correlated Spectroscopy (DQFCOSY) experiment was used to ascertain the various geminal couplings between the methylene protons. © 1998 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 36: 1081–1092, 1998     

APPLICATION OF HMBC AND HMQC-TOCSY NMR METHODS TO ASSIGN THE STRUCTURES OF BICYCLIC-PEPTIDE MIMETICS

Abstract

The structures of representative bicyclic peptides are confirmed through the NMR methods of HMBC and HMQC-TOCSY. Complete assignment of proton and carbon resonances is afforded by these two-dimensional NMR methods. HMQC-TOCSY is especially useful for assigning spectra in molecules having extensive proton spin systems and in establishing connectivities between protonated carbons. Long-range proton-carbon connectivities obtained by HMBC confirm structure in molecules containing heteroatoms or non-protonated carbons that interrupt proton spin systems.     

Simplifying the complex 1H NMR spectra of fluorine-substituted benzamides by spin system filtering and spin-state selection: multiple-quantum-single-quantum correlation

The proton NMR spectra of fluorine-substituted benzamides are very complex (Figure 1) due to severe overlap of (1)H resonances from the two aromatic rings, in addition to several short and long-range scalar couplings experienced by each proton. With no detectable scalar couplings between the inter-ring spins, the (1)H NMR spectra can be construed as an overlap of spectra from two independent phenyl rings. In the present study we demonstrate that it is possible to separate the individual spectrum for each aromatic ring by spin system filtering employing the multiple-quantum-single-quantum correlation methodology. Furthermore, the two spin states of fluorine are utilized to simplify the spectrum corresponding to each phenyl ring by the spin-state selection. The demonstrated technique reduces spectral complexity by a factor of 4, in addition to permitting the determination of long-range couplings of less than 0.2 Hz and the relative signs of heteronuclear couplings. The technique also aids the judicious choice of the spin-selective double-quantum-single-quantum J-resolved experiment to determine the long-range homonuclear couplings of smaller magnitudes.     

Spectra edited by relative signs of homonuclear couplings of low abundance nuclei

The proposed homonuclear coupling sign edited (HCSE) experiment can detect signed homonuclear couplings between low abundant nuclei like ¹³C, ²⁹Si and ¹⁵N in linear spin systems, that is, in systems where two nuclei are coupled by the measured coupling, and one of them is coupled by a second coupling to a nucleus of different kind. The third nucleus is usually high abundant hydrogen. Two spectra are measured during the HCSE experiment. Their weighed sum and difference yield two other spectra, one containing peaks coupled only by positive measured couplings and the other having peaks coupled by negative measured couplings. The usual E.COSY‐type experiment requires all three couplings in the three spin system (triangular spin system) and not only two couplings as the HCSE experiment. The experiment was successfully tested on known carbon–carbon and silicon–silicon two bond couplings. A set of six simple siloxanes with |²J(Si‐O‐Si)| couplings ranging from 0.5 to 9.0 Hz was measured for the first time, and all the couplings were found to be positive. Copyright © 2012 John Wiley & Sons, Ltd.     

Semiautomatic sequence-specific assignment of proteins based on the tertiary structure--the program st2nmr

The sequence-specific assignment of resonances is still the most time-consuming procedure that is necessary as the first step in high-resolution NMR studies of proteins. In many cases a reliable three-dimensional (3D) structure of the protein is available, for example, from X-ray spectroscopy or homology modeling. Here we introduce the st2nmr program that uses the 3D structure and Nuclear Overhauser Effect spectroscopy (NOESY) peak list(s) to evaluate and optimize trial sequence-specific assignments of spin systems derived from correlation spectra to residues of the protein. A distance-dependent target function that scores trial assignments based on the presence of expected NOESY crosspeaks is optimized in a Monte Carlo fashion. The performance of the program st2nmr is tested on real NMR data of an alpha-helical (cytochrome c) and beta-sheet (lipocalin) protein using homology models and/or X-ray structures; it succeeded in completely reproducing the correct sequence-specific assignments in most cases using 2D and/or 15N/13C Nuclear Overhauser Effect (NOE) data. Additionally to amino acid residues the program can also handle ligands that are bound to the protein, such as heme, and can be used as a complementary tool to fully automated assignment procedures.     

SQSQh: 1H‐detected SQ–SQ experiment for determination of signed silicon–carbon coupling constants

A new variant of SQ–SQ pulse sequence (SQSQh) for relative sign determination and detection of small silicon–carbon couplings over more than one bond is presented. In the SQSQh sequence, proton detection replaces carbon detection used in the original SQ–SQ pulse sequence (SQSQc). The theoretical gain in sensitivity was experimentally tested on two samples (trimethylsiloxyethane, 1, and 1,2,4‐tris(trimethylsiloxy)benzene, 2), the experimentally found gain provided by the SQSQh over the SQSQc method varied between 6 and 8. The method can be applied to linear spin systems, i.e. to systems where the silicon is coupled to the carbon in question and to any hydrogen not necessarily bonded to the carbon. Copyright © 2010 John Wiley & Sons, Ltd.     

J‐Edited Pure Shift NMR for the Facile Measurement of nJHH for Specific Protons

We report a novel 1D J‐edited pure shift NMR experiment (J‐PSHIFT) that was constructed from a pseudo 2D experiment for the direct measurement of proton–proton scalar couplings. The experiment gives homonuclear broad‐band ¹H‐decoupled ¹H NMR spectra, which provide a single peak for chemically distinct protons, and only retain the homonuclear‐scalar‐coupled doublet pattern at the chemical‐shift positions of the protons in the coupled network of a specific proton. This permits the direct and unambiguous measurement of the magnitudes of the couplings. The incorporation of a 1D selective correlation spectroscopy (COSY)/ total correlation spectroscopy (TOCSY) block in lieu of the initial selective pulse, results in the exclusive detection of the correlated spectrum of a specific proton.     

Separation behaviors of xylenol isomers by gas chromatography with helps of hydrogen bonding

Summary Xylenol isomers can be resolved on most polyols (sugars or sugar alcohols) and polyethers (polyethylene glycol or polypropylene glycol) with hydrogen-bonding interaction. They are separated on vinical polyols which have more hydroxy hydrogen than tetrol, and even on vicinal triol when its hydroxy hydrogen is acidic (stronger proton donor). The stronger is the hydrogen bonding interaction between xylenols and the liquid phase, the better is the separation of 2,4- and 2,5-xylenol, and the poorer the separation of 2,4-and 2,3-xylenol.     

Selective observation of Asp and Glu resonances in 13CO detected experiments

We present a filter element to observe exclusively the resonances of Asp and Glu residues in several ¹³C detected experiments, CACO, CBCACO, and CCCO. As in these experiments the carboxylate resonances appear in the directly detected dimension, it is possible to measure their chemical shifts with a high precision. Therefore, the experiments can be of great utility in the accurate determination of the pK_a's of these residues. Furthermore, the experiments can be applied in the study of deuterated proteins, where the usual experiments for pK_a determination cannot be used. Finally, the good resolution with which the carboxylate spectrum is obtained allows observing the coupling between the carboxyl carbon and the backbone CO in Asp residues, what provides information on their side chain conformation. Copyright © 2011 John Wiley & Sons, Ltd.     

A selective pulse sequence for the determination of long‐range C,H spin coupling constants

A new pulse sequence for determining scalar long range C,H spin couplings in small organic molecules is proposed. It is based on the combination of a selective J‐resolved spectrum with a selective HMBC and displays the long‐range spin couplings of one chosen carbon atom in the indirect dimension. Advantages and disadvantages are discussed on example spectra of ethanol, strychnine and sucrose. Copyright © 2003 John Wiley & Sons, Ltd.     

^1H NMR选择检测新技术用于新三萜皂苷的结构研究

从中药川续断根部的乙醇提取物中分得1个新的三萜皂苷,经过测定,其结构为:3-O-α-L-吡喃鼠李糖(1--3)-β-D-吡喃葡萄糖(1--3)-β-L-吡喃鼠李糖(1--2)-β-L-吡喃阿拉伯糖-常春藤苷元(1).研究表明,采用一维SEMDY和三照射NOE差谱NMR新技术相结合能以"拼凑"方式,测定糖链结构.方法简便、快速、测定结果可靠,重叠的信号可以指认,并且对样品不必进行化学降解或衍生化.本方法也可以用于其他类型的寡糖结构测定。     

Characterization of polyphenols from plant materials through their silylation and 29Si NMR spectroscopy-line assignment through 29Si, 13C spin-spin couplings

The lines in (29)Si NMR spectra of silylated polyphenols and some other compounds are difficult to assign owing to the absence of couplings with protons outside the silyl group. The assignment can be derived through small (n)J((29)Si, (13)C) couplings (n > 1). Using a previously described method for measurements of these couplings, the assignment procedure is demonstrated here on three examples of trimethylsilylated phenols: 7-hydroxyflavone, ferulic acid, and quercetin. In some cases the procedure can be used to identify carbon atoms to which the siloxy groups are attached.     

Quantum chemical and nuclear magnetic resonance spectral studies on molecular properties and electronic structure of berberine and berberrubine

The structural and electronic properties of berberine and berberrubine have been studied extensively using density functional theory (DFT) employing B3LYP exchange correlation. The geometries of these molecules have been fully optimized at the B3LYP/6-311G** level. The chemical shift of 1H and 13C resonances in NMR spectra of these molecules have been calculated using the gauge invariant atomic model (GIAO) method as implemented in Gaussian 98. One- and two-dimensional HSQC (1H-13C), HMBC (1H-13C) and ROESY (1H-1H) spectra were recorded at 500 MHz for the berberine molecule in D(2)O solution. All proton and carbon resonances were unambiguously assigned, and inter-proton distances obtained from ten observed NOE contacts. A restrained molecular dynamics (RMD) approach was used to get the optimized solution structure of berberine. The structure of berberine and berberrubine molecules was also obtained using the ROESY data available in literature. Comparison of the calculated NMR chemical shifts with the experimental values revealed that DFT methods produce very good results for both proton and carbon chemical shifts. The importance of the basis sets to the calculated NMR parameters is discussed. It has been found that calculated structure and chemical shifts in the gas phase predicted with B3LYP/6-311G** are in very good agreement with the present experimental data and the measured values reported earlier.     

DNA fragment conformations. I—methods for the assignment of DNA fragment proton resonances. 1H NMR spectra of dApTpGpT and dApCpApTpGpT

A general method for the assignment of DNA fragment proton resonances, especially for the sugar protons, has been presented and used to interpret the 400 MHz proton spectra of dApTpGpT and dApCpApTpGpT in neutral aqueous solution. Only fine splittings of about 3 Hz are observed in the H-2″ resonances, and the total splitting is larger for the H-2′ (≈29 Hz) than for the H-2″ (22–23 Hz) multiplets. The purine and pyrimidine resonances can be distinguished on the basis of the H-2″ and H-2″ chemical shifts. The resonances of the H-2′ and H-2″ protons (above and below the sugar plane, respectively) of dA and dG exhibit chemical shifts of 2.65—2.80 ppm, while those of dC and dT residues are located at higher fields between 1.95 and 2.40 ppm. At high temperature (≥60°C), δH-2′>YδH-2″ for the purine family, while δH-2′ « δH-2″ in the case of the pyrimidine family. Except for the terminal residue, the H-3′ resonances of dA and dG are located at lower fields compared with those of the dC and dT residues. The same is true for the H-4′ resonances. In general δA_1′>δG_1′ and in the case of self complementary duplexes the H-1′ and H-2′ chemical shift variations versus temperature are found to be larger for the dC than for the dT residues.     

Temperature dependencies of amide 1H- and 15N-chemical shifts in hyaluronan oligosaccharides

Temperature coefficients (Deltadelta/DeltaT) of amide chemical shifts of N-acetylglucosamine residues have been measured in a range of oligosaccharides of the important vertebrate polysaccharide hyaluronan. Odd- and even-numbered oligosaccharides with glucuronic acid, Delta-4,5-unsaturated glucuronic acid and N-acetylglucosamine at the termini were investigated. All amide proton temperature coefficients were only slightly less negative (-6.9 to - 9.1 ppb/ degrees C) than those of amide protons in free exchange with water (approximately equal to -11 ppb/ degrees C), indicating an absence of persistent intramolecular hydrogen bonds. With the exception of amide groups in reducing-terminal N-acetylglucosamine rings, all amide proton environments have the same temperature coefficient (-6.9 ppb/ degrees C), irrespective of differences in amide group chemical shifts and (3)J(HH) coupling constants, i.e. they do not sense subtle differences in orientation of the amide group. Amide nitrogen temperature coefficients report the same phenomena but with greater sensitivity. These data provide a set of reference values for temperature coefficients measured in other carbohydrates with acetamido sugars.     

Amide-Exchange-Rate-Edited NMR （AERE-NMR） Experiment： A Novel Method for Resolving Overlapping Resonances

This paper describes an amide-exchange-rate-edited （AERE） NMR method that can effectively alleviate the problem of resonance overlap for proteins and peptides. This method exploits the diversity of amide proton exchange rates and consists of two complementary experiments： （1） SEA （solvent exposed amide）-type NMR experiments to map exchangeable surface residues whose amides are not involved in hydrogen bonding, and （2） presat-type NMR experiments to map solvent inaccessibly buried residues or nonexchangeable residues located in hydrogen-bonded secondary structures with properly controlled saturation transfer via amide proton exchanges with the solvent. This method separates overlapping resonances in a spectrum into two complementary spectra. The AERE-NMR method was demonstrated with a sample of ^15N/^13C/^2H（70%） labeled ribosome-inactivating protein trichosanthin of 247 residues.