Russian-language chemical information in Chemical Abstracts Service and VINITI

The flow of Russian-language chemical information of 1997 in theChemical Abstracts (CA) database (DB) and in the corresponding parts of the multi-subject database of the Russian Institute for Scientific and Technical Information (VINITI) is analyzed. The CA coverage corresponds to not only the “Khimiya” (Chemistry) DB but also, fully or partly, to at least six other VINITI DBs. The total array of the Russian-language documents in these DBs exceeds that in the CA array almost twofold, even taking into account the possible overlap. This is due to the limited-circulation (“gray”) literature and nonspecialized journals. The distribution of Russian-language publications among the CA parts and sections is mapped. Their ranking shows that applied works are presented most fully in CA, some sections of organic and physical chemistry are presented at a level higher than the average level, and the biochemical part of the Russian-language document flow appears to be presented most poorly. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 183–187, January, 2000.     

Russian-language chemical information in Chemical Abstracts Service and VINITI

The flow of Russian-language chemical information of 1997 in theChemical Abstracts (CA) database (DB) and in the corresponding parts of the multi-subject database of the Russian Institute for Scientific and Technical Information (VINITI) is analyzed. The CA coverage corresponds to not only the “Khimiya” (Chemistry) DB but also, fully or partly, to at least six other VINITI DBs. The total array of the Russian-language documents in these DBs exceeds that in the CA array almost twofold, even taking into account the possible overlap. This is due to the limited-circulation (“gray”) literature and nonspecialized journals. The distribution of Russian-language publications among the CA parts and sections is mapped. Their ranking shows that applied works are presented most fully in CA, some sections of organic and physical chemistry are presented at a level higher than the average level, and the biochemical part of the Russian-language document flow appears to be presented most poorly. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 183–187, January, 2000.     

Photoelectron spectrum and quantum chemical analysis of the structure of bis(1,3,6-trimethyluracilyl-5)methane

Photoelectron spectra of bis(1,3,6-trimethyluracilyl-5)methane (I) and 1,3,6-trimethyluracil (II) were studied; AM1 optimization of geometric characteristics was carried out. The total energy minimum and the best agreement between the values of IP_m and -ɛ_m were obtained for conformations with nearly orthogonal location of uracilyl fragments. In such conformations, the highest occupied orbitals are pseudodegenerate. To interpret the photoelectron spectra, we employed ab initio calculations in STO-3G and 4-31G basis sets. For uracil and its derivatives, all methods give the π, π, n⁻, n⁺, π sequence of the highest orbitals. A. E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center, Russian Academy of Sciences. Translated fromZhurnal Struktumoi Khimii, Vol. 36, No. 1, pp. 102–107, January–February, 1995. Translated by L. Smolina     

Conformational structure of divinylacetylene

Ab initio quantum chemical calculations of the divinylacetylene molecule with different mutual orientations of vinyl groups are carried out using the 6–31G*/MP2 basis set. The torsional potential is approximated by a Fourier series. It is shown that the second term of the series dominates. The enthalpies of the cis- and trans-isomers are nearly equal; the maximum corresponds to the gosh-orientation (180.4 cm⁻¹ with respect to the cis-form). The vibrational spectra of the compounds with cis-, gosh-, and trans-orientations of vinyl groups are analyzed based on the ab initio calculations. It is concluded that the experimental data available in the literature agree with the hypothesis that divinylacetylene exists as cis- and trans-isomers. Translated fromZhumal Strukturnoi Khimii, Vol. 39, No. 4, pp. 610–617, July–August, 1998.     

Prephase state in 2-bromo-2-nitropropane-1,3-diol crystals: Structural aspects and IR spectra

This paper is a continuation of our series of publications dealing with crystal-lattice processes occuning on heating and at temperatures near the transition point and accompanied by structural changes in discrete molecules and in the crystal structure as a whole. The prephase state of 2-bromo-2-nitropropane-1,3-diol crystals and the transition from monoclinic to cubic phase are studied by IR spectroscopy at 296–391 K. Translated fromZnumal Strktumo, Chimii, Vol. 41, No. 2, pp. 294–299, March–April, 2000.     

Analysis of Solvent–Solvent Interactions in Mixed Isosteric Solvents by Inverse Gas Chromatography

The Flory–Huggins interaction parameter, χ ₂₃, characterizing the interaction between solvents in a mixed stationary phase has been calculated using inverse gas chromatography (IGC). The χ ₂₃ parameters for four mixed solvent systems formed by mixing a non-polar branched alkane, 19, 24-dioctadecyldotetracontane (C78), with four different polar solvents are analysed as a function of temperature. Two of the polar solvents are formed by replacing one of the –CH₃ groups of C78 by –OH (POH) group and –CN (PCN) group and the other two polar solvents are formed by replacing all the four –CH₃ groups of C78 by four –CF₃ (TTF) groups and four –OCH₃ (TMO) groups. The five solvents have similar structures and nearly the same molar volume and in mixtures, they form regular solutions. For the mixture, C78 + POH, χ ₂₃ was calculated at two compositions and for the remaining three mixtures χ ₂₃ was calculated at equimolar composition. Eight solute probes representing all possible chemical structures and polarity were used under conditions approaching infinite dilution. The effects of temperature, concentration of the mixed solvent and probe solute on χ ₂₃ are presented and discussed. The probe-independent χ ₂₃ values were also calculated by linear regression analysis using the retention data of all the solute probes. In all the mixed solvents considered here the χ ₂₃ values are probe-dependent and decrease with increase of temperature.     

Interpretation of IR spectra using complete sets of fragment compositions and an ir search system. 2. Determination of microfragment compositions of organic compounds

Identification of fragments of organic compounds by the IR spectra of the latter using complete sets of fragments and an IR database of more than 11,000 complete spectra and structures of organic compounds is treated. Probability and reliability of identification are estimated, and types of revealed fragments are examined. For many fragments, automatic identification is possible. The influence of the threshold and nonrandom occurrences of the fragment in the resulting list of structures on the efficiency of identification are considered. The reliability of identification is justified statistically. Translated fromZhurnal Struktumoi Khimii, Vol. 38, No. 1, pp. 155–166, January–February, 1997.     

Radioactivation analysis. Past achievements,present trends and perspective for the future

The development and applications of activation analysis in the period 1945–1980 are reviewed. In analysing the number of publications reported with time three periods can be distinguished: (a) A first period of slow development, up to 1960, in which the technique showed its very high sensitivity and demonstrated the importance of trace elements; (b) A second period of fast development (1960–1970) in which all aspects of the technique were developed; (c) A third period (after 1970) in which development occurred at a rate approximately equal to the average development rate of analytical chemistry, in terms of the number of publications reported. The present trends shows only minor developments in the methodology, while a good a potential for new and original applications is evident. The importance of a good scientific knowledge of the specific areas of applications is considered necessary to properly frame the analytical activities.     

Segmented contracted basis sets for atoms H through Xe: Sapporo-(DK)-<Emphasis Type="Italic">n</Emphasis>ZP sets (<Emphasis Type="Italic">n</Emphasis> = D,T, Q)

For the 54 atoms from H to Xe, compact yet accurate segmented Gaussian-type basis sets have been constructed for all electron calculations. Non-relativistic nZP (Sapporo-nZP) sets for Li–Xe and relativistic nZP (Sapporo-DK-nZP) sets for K–Xe are developed (n = D, T, Q), which efficiently incorporate valence and core electron correlations. Test calculations at the coupled-cluster level of theory are performed for spectroscopic constants of 12 hydrides of s- and d-block atoms and 12 diatomics of p-block atoms in their ground states. For all molecules, the calculated spectroscopic constants approach to the experimental values smoothly as the basis set quality increases.     

Ab initio quantum chemical calculations of enolized and deprotonated forms of Β-diketones and their derivatives

The data of ab initio quantum chemical calculations of Β-diketones and their anions performed in split valence-shell bases are presented. These compounds are of great interest as ligands in numerous chelate complexes. The electronic structures of substituted enolized Β-diketones containing the period III elements S and Cl are compared. It is shown that using the Huzinaga pseudopotential for describing core electronic shells makes it possible to adequately reproduce the main peculiarities of the structure of the outer electronic layers at a qualitative level. The basis used substantial affects on the calculated values of atomic charges, bond orders, and dipole moments, whereas the one-electron energies are less sensitive to the choice of the basis. Translated fromZhurnal Struktumoi Khimii, Vol.40, No. 2, pp. 234–241, March–April, 1999.     

Thermal stability of recombinant green fluorescent protein (GFPuv) at various pH values

The thermal stability of the recombinant green fluorescent protein (GFPuv) expressed by Escherichia coli cells and isolated by three-phase partitioning extraction with hydrophobic interaction chromatography was studied. The GFPuv (3.5–9.0 μg of GFPuv/mL) was exposed to various pH conditions (4.91–9.03) and temperatures (75–95°C) in the 10 mM buffers: acetate (pH 5.0–7.0), phosphate (pH 5.5–8.0), and Tris-HCl (pH 7.0–9.0). The extent of protein denaturation (loss of fluorescence intensity) was expressed in decimal reduction time (D-value), the time exposure required to reduce 90% of the initial fluorescence intensity of GFPuv. For pH 7.0 to 8.0, the thermostability of GFPuv was slightly greater in phosphate buffer than in Tris-HCl. At 85°C, the D-values (pH 7.1–7.5) ranged from 7.24 (Tris-HCl) to 13.88 min (phosphate) The stability of GFPuv in Tris-HCl (pH>8.0) was constant at 90 and 95°C, and the D-values were 7.93 (pH 8.38–8.92) and 6.0 min (pH 8.05–8.97), respectively. The thermostability of GFPuv provides the basis for its potential utility as a fluorescent biologic indicator to assay the efficacy of moist-heat treatments at temperatures lower than 100°C.     

Preconcentration of noble metals on a polymer support as complexes of organic reagents and their subsequent determination in the solid phase

Conditions of the sorption preconcentration of Pt, Pd, Au, Ag, and Hg as colored complexes of azorhodanines, tyrodine, and sulfonitrophenol M from acidic solutions (pH 0–2) on a polyamide membrane in the flow mode are determined. At a flow rate of 10–20 mL/min, concentrations of determined elements of 10^-9-10^-7 M, and pressure of 10–20 mm Hg, the complexes are nearly quantitatively sorbed on a polyamide membrane disk (d = 1 cm,m = 2.7 mg, andl = 0.1 mm). The influence of the composition of the test solutions on the formation of the analytical signal in the solid phase is studied. Rapid sorption-spectrometric procedures are developed for the determination of Pt, Pd, Au, Ag, and Hg with the detection limit 5–30 ng of the element in the sorbent zone     

Expansion Formulae for Two-center Integer and Noninteger <Emphasis Type="Italic">n</Emphasis> STO Charge Densities and their Use in Evaluation of Multi-center Integrals

Using complete orthonormal sets of Ψ^α-exponential type orbitals (Ψ^α-ETOs, α =1, 0, −1, −2, ...) introduced by the author, the series expansion formulae are derived for the two-center integer and noninteger n STO (ISTO and NISTO) charge densities in terms of integer n STOs at a third center. The expansion coefficients occurring in these relations are presented through the two-center overlap integrals between STOs with integer and noninteger principal quantum numbers. The general formulae obtained for the STO charge densities are utilized for the evaluation of two-center Coulomb and hybrid integrals of NISTOs appearing in the Hartee–Fock–Roothaan approximation. The final results are expressed in terms of both the overlap integrals and the one-center basic integrals over integer n STOs. It should be noted that the result for the multi-center multielectron integrals with two-center noninteger n STO charge densities presented in this paper were not appeared in our past publications.     

Basis of the 'duplication' strategy for enhancing the enantiomeric excess in chiral resolutions: proof of the equivalence of rate and product ratios

The 'duplication' strategy for the further enrichment of an already enantiomerically-enriched mixture consists of the formation of all the three possible 'dimeric' diastereomers, i.e., (R)–X–(R), (R)–X–(S) and (S)–X–(S), where X is an appropriate spacer that can be readily cleaved to yield the original enantiomers. The mixture of (R)–X–(R) and (S)–X–(S) thus obtained would be of higher enantiomeric excess (e.e.) as compared to the original mixture, on the basis of a simple kinetic scheme. The success of the strategy is experimentally well-established, but is apparently based on the (unproven) assumption that the theoretically-derived rate ratios are identical to the experimentally observed product ratios. Although the detailed kinetic treatment for a system such as the above is extremely complex, it is possible to show (mathematically) that the above assumption is indeed justified when all the three diastereomers are formed without chiral discrimination (as assumed in the strategy).     

New tools: Uncertainty-based data evaluation

 The principles of uncertainty-based data evaluation are explained. Based on a brief review of recent publications on the topic, examples for application to standard procedures in analytical chemistry – calibration, method validation, standard addition etc., – are given. The performance and the advantages of uncertainty-based data evaluation are discussed. Received: 4 July 1998 · Accepted: 6 July 1998     

Four-membered ring cyclic ketene –O,O–, –O,S–, –O,N–, –S,S–, –S,N–, and –N,N–acetals and their corresponding cations: a computational study

A systematic computational study of four-membered cyclic ketene –O,O–, –O,S–, –O,N–, –S,N– and –N,N-acetals as well as their protonated analogs have been performed at the second order M?ller Plesset level with a polarized triple zeta basis set. The main purpose of this study was to make predictions about the nucleophilicity of these systems and the variations in nucleophilicity with the hetero atoms. Our calculations suggest that all six target molecules are good nucleophiles, and that the N,N analog is the strongest and the S,S analog the weakest nucleophile. Our results include molecular geometries, bond lengths, proton affinities, vibrational frequencies, and calculated charges.     

Influence of molecular weight on the microhardness of poly(ethylene terephthalate)

 Poly(ethylene terephthalate) (PET) was annealed in vacuum at different temperatures (190–260 °C) for different times (10 min–24 h) in order to examine the mechanical properties (microhardness) of PET samples with a wide range of molecular weights (10 000–120 000). Short annealing times result in a twofold decrease in mol. wt. due to hydrolytic decomposition. However, long annealing times give rise to a substantial molecular weight increase. It is found that microhardness (H) rises linearly with the degree of crystallinity obtained during up-grading of mol. wt. and its extrapolation leads to H-values of completely crystalline PET, H ^PET _c=405 MPa for samples with conventional mol. wt. and of 426 MPa for samples with mol. wt. higher than 30 000. It is shown that the increase of mol. wt. for each set of samples with a given range of degree of crystallinity also causes a slight increase of H. The influence of mol. wt. upon hardness is discussed in the light of the changes in the physical structure (crystallinity, crystal thickness) which is formed at given heat treatment conditions. Received: 29 April 1997 Accepted: 23 September 1997     

A theoretical charge density study on nitrogen-rich 4,4′,5,5′-tetranitro-2,2′-bi-1H-imidazole (TNBI) energetic molecule

The bond topological and electrostatic properties of nitrogen-rich 4,4′,5,5′-tetranitro-2,2′-bi-1H-imidazole (TNBI) energetic molecule have been calculated from the DFT method with the basis set 6-311G** and the AIM theory. The optimized geometry of this molecule is almost matched with the experimental geometric parameters. The electron density at the bond critical point and the Laplacian of electron density of C–NO₂ bonds are not equal, one of them is much weaker than the other. Similar trend exists in the C–N bonds of the imidazole ring of the molecule. The ratio of the bond dissociation energy (BDE) of the weakest bond to the molecular total energy exhibits nearly a linear correlation with the impact sensitivity; its h ₅₀% value is ~32.01 cm. The electrostatic potential around both the nitro groups are found unequal; the NO₂ group of weakest C–NO₂ bond exhibits an extended electronegative region.     

An immunoassay for a urinary metabolite as a biomarker of human exposure to the pyrethroid insecticide permethrin

Permethrin is the most popular synthetic pyrethroid insecticide used in agriculture and public health. For the assessment of human exposure to permethrin, a competitive indirect enzyme-linked immunosorbent assay (ELISA) for the detection of the glycine conjugate of a major metabolite, cis-/trans-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropane-1-carboxylic acid (DCCA), of permethrin was developed based on a polyclonal antibody. An assay based on an antibody with a high sensitivity was optimized and characterized. The IC₅₀ value and the detection range for trans-DCCA–glycine, in the assay buffer were 1.2 and 0.2−7.0 μg/L, respectively. The antibody recognized trans-DCCA–glycine and the mixture of cis-/trans-DCCA–glycine with an isomer range from 30:70 to 50:50 nearly equally. Little or no cross-reactivity to permethrin and its other free metabolites or glycine conjugates was measured. The integration of the ELISA and solid-phase extraction which was used to reduce the matrix effect from human urine samples provided for analysis of total cis-/trans-DCCA–glycine at low parts per billion levels in the samples. The limit of quantitation of the target analyte was 1.0 μg/L in urine with a limit of detection of 0.1 μg/L in buffer. This assay might be a useful tool for monitoring human exposure to permethrin.