Changing Rules of Bonding Electron Pair Correlation Energies of CH3X （X = F, OH, NH2） Systems

1 INTRODUCTION It has been known that the electron correlation energy of molecular systems was, and still is, one of the most serious bottleneck problems to the chemis- try accuracy of computational quantum chemistry. Since L鰓din[1] gave the definition …     

Electron attachment and detachment, and the electron affinities of C5F5N and C5HF4N

Rate constants have been measured for electron attachment to C5F5N (297-433 K) and to 2, 3, 5, 6-C5HF4N (303 K) using a flowing-afterglow Langmuir-probe apparatus (at a He gas pressure of 133 Pa). In both cases only the parent anion was formed in the attachment process. The attachment rate constants measured at room temperature are 1.8 +/- 0.5 X 10(-7) and 7 +/- 3 X 10(-10) cm(-3) s(-1), respectively. Rate constants were also measured for thermal electron detachment from the parent anions of these molecules. For C5F5N- detachment is negligible at room temperature, but increases to 2530 +/- 890 s(-1) at 433 K. For 2, 3, 5, 6-C5HF4N-, the detachment rate at 303 K was 520 +/- 180 s(-1). The attachment/detachment equilibrium yielded experimental electron affinities EA(C5F5N)=0.70 +/- 0.05 eV and EA(2, 3, 5, 6-C5HF4N)=0.40 +/- 0.08 eV. Electronic structure calculations were carried out for these molecules and related C5HxF5-xN using density-functional theory and the G3(MP2)//B3LYP compound method. The EAs are found to decrease by 0.25 eV, on average, with each F substitution by H. The calculated EAs are in good agreement with the present experimental results.     

An ab initio evaluation of the role of p,π interaction: I. Ethylene derivatives

The RHF/6-311G(d) and MP2/6-311G(d) calculations with full geometry optimization were performed for XCH=CH₂ molecules (X = F, Cl, Br, CH₃, CH₂CH₃, CH₂F, CHO). The p _y electron density distribution in these molecules and the bonding molecular orbitals formed by the p _y orbitals of atoms of the planar fragment of these molecule (atomic orbitals whose symmetry axes are perpendicular to this plane) are not determined by the p,π conjugation between the lone electron pair of the heteroatom in substituent X and π electrons of the C=C bond. Changes in the population of the p _y orbitals of the halogen and carbon atoms in going from X = F to X = Cl and Br are not associated with changes in the extent of this p,π interaction. Taking into account the electon correlation in the MP2 method does not noticeably alter the features of the electron density distribution in these molecules estimated by restricted Hartree-Fock calculations.     

Radial exchange density and electron delocalization in molecules

The six-dimensional exchange density Gamma(X)(r1,r2) is a measure of electron delocalization at the Hartree-Fock level. Fixation of r1 to a constant point results in a three-dimensional function, which displays electron delocalization that originates from r1 in position space. In this work, the dimensionality of Gamma(X)(r1,r2) is lowered from six to four by integration with regard to r2 over sphere surfaces of radius d, centered at r1 = r. The resulting radial exchange density Gamma(X)(d,r) is visualized for constant d values as a function of r. This approach indicates regions of position space which are origins of delocalization over a certain distance d. The shape of these regions very strongly depends on d. Structures similar to pi orbital densities are observed at large d values (4.5 au) in unsaturated carbon compounds, while smaller values (1.5 au) can result in structures, which resemble the Laplacian of the electron density. The abundance of different spatial structures inherent in the radial exchange density implies interesting capabilities for the orbital-independent interpretation of electronic structures in position space.     

Activation of carbon-hydrogen bonds via 1,2-addition across M-X (X = OH or NH(2)) bonds of d(6) transition metals as a potential key step in hydrocarbon functionalization: a computational study

Recent reports of 1,2-addition of C-H bonds across Ru-X (X = amido, hydroxo) bonds of TpRu(PMe3)X fragments {Tp = hydridotris(pyrazolyl)borate} suggest opportunities for the development of new catalytic cycles for hydrocarbon functionalization. In order to enhance understanding of these transformations, computational examinations of the efficacy of model d6 transition metal complexes of the form [(Tab)M(PH3)2X]q (Tab = tris-azo-borate; X = OH, NH2; q = -1 to +2; M = TcI, Re(I), Ru(II), Co(III), Ir(III), Ni(IV), Pt(IV)) for the activation of benzene C-H bonds, as well as the potential for their incorporation into catalytic functionalization cycles, are presented. For the benzene C-H activation reaction steps, kite-shaped transition states were located and found to have relatively little metal-hydrogen interaction. The C-H activation process is best described as a metal-mediated proton transfer in which the metal center and ligand X function as an activating electrophile and intramolecular base, respectively. While the metal plays a primary role in controlling the kinetics and thermodynamics of the reaction coordinate for C-H activation/functionalization, the ligand X also influences the energetics. On the basis of three thermodynamic criteria characterizing salient energetic aspects of the proposed catalytic cycle and the detailed computational studies reported herein, late transition metal complexes (e.g., Pt, Co, etc.) in the d6 electron configuration {especially the TabCo(PH3)2(OH)+ complex and related Co(III) systems} are predicted to be the most promising for further catalyst investigation.     

苯-卤素(X2, X=F, Cl, Br, I)相互作用本质的对称性匹配微扰理论研究

在MP2水平下对被定义为"电荷转移复合物(CTC)"的苯(C6H6)-卤素分子X2(X＝F, Cl, Br, I)相互作用体系进行了量子化学研究. 在优化所得C6H6-X2(X＝F, Cl, Br, I)复合物的平衡几何结构中, 卤素分子X2接近垂直指向苯环上碳-碳双键的中心. 自然键轨道(NBO)分析结果表明, 苯-卤素体系中电荷转移的数量很少. 对称性匹配微扰理论(Symmetry-adapted perturbation theory, SAPT) 能量分解结果显示, 在4个复合物体系中, 静电作用的贡献相对较小(只占总吸引作用的20%左右), 对于C6H6-F2体系, 色散作用是其主要吸引作用, 对于C6H6-Cl2, C6H6-Br2和C6H6-I2 体系, 诱导作用则是其主要的吸引作用, 从F到I, 色散作用逐渐减弱, 诱导作用逐渐增强, 表明在电子相关水平上将苯-卤素体系称为"电荷转移复合物"的说法并不确切.     

An ab initio evaluation of the role of p,π interaction: II. Molecules of the CH3COX series

The RHF/6-311G(d) and MP2/6-311G(d) calculations with full geometry optimization were performed for CH₃COX molecules (X = F, Cl, Br, CH₃). Variations in the populations of the p _y orbitals of their halogen and carbon atoms (orbitals whose symmetry axes are perpendicular to the molecular plane) from X = F to X = Cl, Br, and CH₃ are not associated with variations in the extent of the p,π conjugation between the lone electron pair of the halogen atom and the π-electron system of the carbonyl group. The bonding molecular orbitals formed by these atomic p _y orbitals are not determined by this interaction. The RHF/6-311G(d) and MP2/6-311G(d) calculations give similar results.     

Magnetic resonance study of Rh complexes in AgCl microcrystals

X-ray or UV irradiation at room temperature of Rh3+ doped AgCl emulsion powders leads to the production of three paramagnetic Rh2+ related centres, labeled R4, R5 and R6. A combined X and Q band electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) study allowed the determination of a nearly complete structural model for these centres. In the X band ENDOR spectra of R4 and R5 interactions of the unpaired electron with nearby protons have been identified, indicating that for these centres Cl- ligands have been exchanged by H2O or OH-. The R6 centre, identified as a (RhCl6)4- complex, has been found to be fundamentally different from the dominant centre in large Rh2+ doped AgCl single crystals grown from the melt. The results are compared with recent work by other researchers in the same field.     

Neutral homoaromaticity in some heterocyclic systems

[reaction: see text] Neutral homoaromaticity has been evaluated in heterocyclic systems related to the bicyclo[3.2.1]octane skeleton with replacement of CH(2) at C-2 in bicyclo[3.2.1]octa-3,6-diene with X = BH, AlH, Be, Mg, O, S, PH, NH (12); replacement of CH at C-3 in bicyclo[3.2.1]octa-3,6-dien-2-yl anion with PH, S, NH, O (13); and replacement at C-2 and C-3 with N and O (14). Stabilization energies (SE) are evaluated using density functional theory and homodesmotic equations at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31G(d) level for series 12-14. Stabilization energies are compared with diamagnetic susceptibility exaltations, Lambda, CSGT-B3LYP/6-31G(d)//B3LYP/6-31G(d), and nucleus-independent chemical shifts (NICS), GIAO-B3LYP/6-311+G(2d,p)//B3LYP/6-31G(d). Analysis of frontier orbitals and geometries, B3LYP/6-31G(d)//B3LYP/6-31G(d), and proton affinities of 2-azabicyclo[3.2.1]octa-3,6-diene, pyrrole, and related model systems, B3LYP/6-311+G(2d,2p)//B3LYP/6-31G(d), provide complementary evidence supporting the division of the substrates evaluated into antihomoaromatic (12, X = BH, AlH, and Be), nonhomoaromatic (12, X = O, S, NH, PH), and homoaromatic (13, X = S, PH, NH, O and 14 X = ON), with 12 (X = Mg) appearing as transitional between anti- and nonhomoaromatic.     

Electronic structure and absorption spectra of supramolecular complexes of a fullerene crown ether with a π-extended TTF derivative

The present work is a theoretical investigation on supramolecular complexes of a fullerene crown ether (A and B isomers) with a derivative of π-extended tetrathiafulvalene (T). The geometry and the electronic structure of seven different conformers of the complex of dibenzo-18-crown-6 ether of fullero-N-methylpyrrolidine with a N-benzyl-N-(4-{[9,10-bis(1,3-dithiol-2-ylidene)-9,10-dihydroanthracen-2-yl]ethynyl}benzyl)ammonium cation were determined. We calculated the complexation energies and the absorption spectra, i.e., the lowest 50 excited electronic states of the complexes have been determined at the ground state optimum geometry. All calculations were carried out employing the density functional theory (DFT) and the time-dependent DFT, using the B3LYP, CAM-B3LYP, ωB97X-D, and M06-2X functionals in conjunction with the 6-31G(d,p) basis set. Various types of van der Waals interactions are observed in the complexes. Conformer complexation energies (CE) range from 2.54 to 2.14 eV in the gas phase and from 1.75 to 1.34 eV in CHCl(3) solvent at the ωB97X-D/6-31G(d,p)//M06-2X/6-31G(d,p) level of theory. There are three major features at about 390, 330, and 290 nm in the calculated absorption spectra of all the conformers. The major peaks correspond to T→T, T→T/F (electron density in both T and the fullerene F of B) and to T→F transitions, depending on the particular conformer. Other charge transfer T→F transitions are observed close to the T→T transition, indicating the possibility of photoinduced electron transfer in all these complexes.     

Electronic structures of five-coordinate iron(III) porphyrin complexes with highly ruffled porphyrin ring

The spin states of the iron(III) complexes with a highly ruffled porphyrin ring, [Fe(TEtPrP)X] where X = F-, Cl-, Br-, I-, and ClO4(-), have been examined by 1H NMR, 13C NMR, EPR, and M?ssbauer spectroscopy. While the F-, Cl-, and Br- complexes adopt a high-spin (S = 5/2) state, the I- complex exhibits an admixed intermediate-spin (S = 5/2, 3/2) state in CD2Cl2 solution. The I- complex shows, however, a quite pure high-spin state in toluene solution as well as in the solid. The results contrast those of highly saddled [Fe(OETPP)X] where the I- complex exhibits an essentially pure intermediate-spin state both in solution and in the solid. In contrast to the halide-ligated complexes, the ClO4(-) complex shows a quite pure intermediate-spin state. The 13C NMR spectra of [Fe(TEtPrP)ClO4] are characterized by the downfield and upfield shifts of the meso and pyrrole-alpha carbon signals, respectively: delta(meso) = +342 and delta(alpha-py) = -287 ppm at 298 K. The data indicate that the meso carbon atoms of [Fe(TEtPrP)ClO4] have considerable amounts of positive spin, which in turn indicate that the iron has an unpaired electron in the d(xy) orbital; the unpaired electron in the d(xy) orbital is delocalized to the meso positions due to the iron(d(xy))-porphyrin(a(2u)) interaction. Similar results have been obtained in analogous [Fe(TiPrP)X] though the intermediate-spin character of [Fe(TiPrP)X] is much larger than that of the corresponding [Fe(TEtPrP)X]. On the basis of these results, we have concluded that the highly ruffled intermediate-spin complexes such as [Fe(TEtPrP)ClO4] and [Fe(TiPrP)ClO4] adopt a novel (d(xz), d(yz))3(d(xy))1(d(z)(2)1 electron configuration; the electron configuration of the intermediate-spin complexes reported previously is believed to be (d(xy))2(d(xz)), d(yz))2(d(z)(2))1.     

Effect of phosphorus concentration on the electronic structure of nanocrystalline electrodeposited Ni–P alloys: an XPS and XAES investigation

A surface analysis has been conducted on a series of electrodeposited nickel‐phosphorus (Ni–P) alloys containing from 6 to 29 at.% phosphorus, using X‐ray photoelectron spectroscopy (XPS) and X‐ray excited Auger electron spectroscopy (XAES). No changes in core‐level binding energies, Ni2p3/2 and Ni2p1/2, P2p, P2s, or X‐ray excited NiLMM and PKLL Auger lines were observed regardless of phosphorus concentration. The only systematic differences observed concerned: (i) the binding energy of the Ni2p satellite peak, (ii) the fine structure of the NiLMM Auger lines, (iii) the percentage of the satellite in the total Ni2p3/2 spectrum and (iv) the valence band density of states in the Ni3d electrons region, all related to the electronic structure of the Ni–P alloys. For the first time, it has been possible to describe and rationalise the influence of (phosphorus) ligand concentration on the electronic structure of nickel‐based alloys, using a screening model proposed in the literature for clarifying the role of substituents on the electronic structure of conductor compounds of nickel. As the phosphorus content increases, the number of non‐bonding Ni3d electrons decreases. Thus the d‐type core‐hole screening is less pronounced and the binding energy of the satellite for the final state with a filled Ni4s shell increases. Copyright © 2008 John Wiley & Sons, Ltd.     

Three novel interpenetrating diamondoid networks from self-assembly of 1,12-dodecanedinitrile with silver(I) salts

The self-assembly of 1,12-dodecanedinitrile (ddn) with various silver salts (NO(3)(-), PF(6)(-), AsF(6)(-), ClO(4)(-)) afforded new polymeric coordination networks with the general formula [Ag(ddn)(2)]X. All these species contain interpenetrating diamondoid nets showing interesting features: with X=NO(3)(-) the cationic [Ag(ddn)(2)](+) network exhibits the highest interpenetration (tenfold) ever found within diamondoid nets exclusively based on coordinative bonds. When X=PF(6)(-) or AsF(6)(-) an eightfold diamondoid network is obtained that shows an unusual [4+4] mode of interpenetration, instead of the "normal" set of eight nets equally translated along a principal axis of the adamantanoid cages. The polymeric species that forms with X=ClO(4)(-) is a fourfold interpenetrating diamondoid network; the lower degree of interpenetration in this case is related to the conformation assumed by the flexible ddn ligands.     

Investigation of structural and biological properties of N-heterocyclic carbene silver(I) and palladium(II) complexes

abstract

Computational investigations were done on bis(1-allyl-3-benzyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)silver(I), bis(1-benzyl-3-butyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)silver(I), bis(1-allyl-3-benzyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)dibromidepalladium(II), and bis(1-benzyl-3-butyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)dibromidepalladium(II) complexes. Related complexes were optimized at different six calculation levels which are HF/6-31G(LANL2DZ), HF/6-31G(d,p)(LANL2DZ), B3LYP/6-31G(LANL2DZ), B3LYP/6-31G(d,p)(LANL2DZ), M062X/6-31G(LANL2DZ) and M062X/6-31G(d,p)(LANL2DZ) levels in vacuo. IR and NMR spectrum are calculated and examined in detail. Energy diagram of molecular orbitals, contour diagram of frontier molecular orbitals, molecular electrostatic potential maps and the harmonic surface of related molecules are examined in detail. Finally, interactions between mentioned complexes and related proteins (1BNA, 1JNX, and 2ING) are investigated in detail. As a result, it is found that biological and anti-cancer properties of silver N-heterocyclic carbene complexes are higher than those of palladium complexes.     

Electronic spectra of organic molecules and their interpretation—IV Effect of terminal atoms with lone electron pairs on the K-bands of conjugated systems

The effect of the hydroxyl, methoxyl, mercapto, methylmercapto, and amino groups as well as of the charged O⁻ and S⁻ atoms (X) at the ends of the conjugated systems (1) and (2) on the position of the corresponding K-bands is discussed.

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The conclusions of earlier investigations are confirmed. The “effective” electron migration in one direction along the absorbing conjugated system (indicated by the long arrow) determines almost exclusively the stability of the observed excited state. The displacement of a K-band to longer wavelengths on introduction of a terminal group (X) can be due either to an electron shift in the substituted system coinciding with the direction of the effective electron migration of the transition or to an increased electron polarisability of the terminal group itself.

A consistent qualitative, but very detailed, theoretical interpretation of these observations is possible by a consideration of the electronic perturbations in the excited state due to Heisenberg resonance, if the molecules are accepted as being built up of localised bonds and involving inductive (inductomeric) electron shifts only.     

Topological characteristics of electron density distribution in SSXY --> XSSY (X or Y = F, Cl, Br, I) isomerization reactions

The reactions of SSXY to XSSY (X or Y = F, Cl, Br, I) have been studied at B3LYP/6-311++G(2df) and MP2/6-311++G(2df) levels based on B3LYP/6-311++G(2df) optimized geometries. There are two pathways (X or Y atom transferring) for each reaction of SSXY to XSSY(X or Y = F, Cl, Br, I). The "Atoms in Molecules" theory has been applied to analyze the topological characteristics of electron density distribution along the reaction path. (a) The S-S-X or S-S-Y ring structure transition region (STR) is contributed to S(1)-X or S(1)-Y bond formation and S(2)-X or S(2)-Y bond annihilation. The STR and structure transition state (STS) are defined. (b) Comparing the two pathways of each SSXY --> XSSY (X, Y = F, Cl, Br, I) reaction, X or Y atom transferring, the broader the STR is, the later the STS appears, and the pathway is easier. (c) When X linked to the same S site of a three-member ring (S-S-F, S-S-Cl, S-S-Br, or S-S-I), the ring STR becomes broader and the STS appears later according to the sequence of X = F, Cl, Br, and I. And in these cases, for exothermic reactions, the higher the DeltaE(P-->TS1) is, the broader the STR is and the later the STS appears. (d) When the same Y atom linked to different three-member-ring S-S-X, the STR becomes broader and the STS appears later according to the sequence of X = F, Cl, Br, and I in the ring. And in these cases, for exothermic reactions, the lower the DeltaE(P-->TS2) is, the broader the STR is and the later the STS appears.     

Synthesis of the pivalamidate-bridged pentanuclear platinum(II,III) linear complexes with Pt...Pt interactions

Pentanuclear linear chain Pt(II,III) complexes [[Pt2(NH3)2X2((CH3)3CCONH)2(CH2COCH3)]2[PtX'4]].nCH3COCH3 (X = X' = Cl, n = 2 (1a), X = Cl, X' = Br, n = 1 (1b), X = Br, X' = Cl, n = 2 (1c), X = X' = Br, n = 1 (1d)) composed of a monomeric Pt(II) complex sandwiched by two amidate-bridged Pt dimers were synthesized from the reaction of the acetonyl dinuclear Pt(III) complexes having equatorial halide ligands [Pt2(NH3)2X2((CH3)3CCONH)2(CH2COCH3)]X' ' (X = Cl (2a), Br (2b), X' ' = NO3-, CH3C6H4SO3-, BF4-, PF6-, ClO4-), with K2[PtX'4] (X' = Cl, Br). The X-ray structures of 1a-1d show that the complexes have metal-metal bonded linear Pt5 structures, and the oxidation state of the metals is approximately Pt(III)-Pt(III)...Pt(II)...Pt(III)-Pt(III). The Pt...Pt interactions between the dimer units and the monomer are due to the induced Pt(II)-Pt(IV) polarization of the Pt(III) dimeric unit caused by the electron withdrawal of the equatorial halide ligands. The density functional theory calculation clearly shows that the Pt...Pt interactions between the dimers and the monomer are made by the electron transfer from the monomer to the dimers. The pentanuclear complexes have flexible Pt backbones with the Pt chain adopting either arch or sigmoid structures depending on the crystal packing.     

Chemical bonding and aromaticity in trinuclear transition-metal halide clusters

Trinuclear transition-metal complexes such as Re(3)X(9) (X = Cl, Br, I), with their uniquely featured structure among metal halides, have posed intriguing questions related to multicenter electron delocalization for several decades. Here we report a comprehensive study of the technetium halide clusters [Tc(3)(μ-X)(3)X(6)](0/1-/2-) (X = F, Cl, Br, I), isomorphous with their rhenium congeners, predicted from density functional theory calculations. The chemical bonding and aromaticity in these clusters are analyzed using the recently developed adaptive natural density partitioning method, which indicates that only [Tc(3)X(9)](2-) clusters exhibit aromatic character, stemming from a d-orbital-based π bond delocalized over the three metal centers. We also show that standard methods founded on the nucleus-independent chemical shift concept incorrectly predict the neutral Tc(3)X(9) clusters to be aromatic.     

Interaction of the atoms in molecules of pyridine and its derivatives according to the results of ab initio calculations

Nonempirical quantum-chemical calculations of pyridine and its 2-, 3-, and 4-X-substituted derivatives (X = F, Cl, Br, Me, and Et) by RHF/6-311G(d) and MP2/6-311G(d) methods indicate an alternation of charges on the atoms of the pyridine ring and of the occupancy of their valence p_y-orbitals. This is caused by the polarization of bonds under the action of the charges of the atoms geminal to C(n). Bonding molecular orbitals in these molecules, formed as a result of the p_y-orbitals, occurring in the plane of the pyridine ring, are not an indication (characteristic) of p, π-conjugation between the unshared electron pair of the heteroatom of a substituent X and the π-electron system of the ring. The results of the calculations by these methods did not differ in principle. Dedicated to Academician of the Russian Academy of Sciences M. G. Voronkov in honor of his 85^th birthday. __________ Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1671–1681, November, 2006.     

Effect of excess electron on structure,bonding, and spectral properties of sulfur/selenium based dichalcogen systems

First principle based quantum chemical methods are employed to characterize structure, bonding, and spectral properties of sulfur and selenium based dichalcogen systems in presence of an excess electron. Inter molecular two-center three-electron (2c-3e) bonding between two chalcogen (X) atoms is described in the systems of the type (R-X)₂^•- (R = Ph, PhCH₂ X = S, Se). In addition, effect of electron withdrawing (-NO₂) and electron donating (-CH₃) groups in phenyl ring on the stability of these 2c-3e bonded systems is also studied in water medium applying a macroscopic hydration model. Molecular parameters and binding energy of the neutral, (R-X)₂ and reduced, (R-X)₂^•- dichalcogen systems are compared. Search for minimum energy structures of these open shell doublet systems are carried out applying various density functionals with dispersion corrections and MP2 method considering 6-311++G (d,p) set of basis functions for all atoms. Effect of water medium is introduced through a macroscopic solvation model based on density (SMD). Frontier molecular orbitals based analysis is carried out for showing the definite presence of 2c-3e bond between two chalcogen atoms in these radical anions of sulfur and selenium based aromatic dichalcogen systems. Excited state calculations are performed on all these systems using Time Dependent Density Functional Theory (TDDFT). UV-Vis spectra are simulated and effect of solvent water on the absorption maximum of these radical anions is discussed. This study illustrates that the combination of electronic effect and geometrical flexibility decides the strength of two-center three-electron bond in these systems.